Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00036
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 714
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00036

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00036 Chr01 123381654-146487023 Chr01 15246434-38351657 mixed High 200 anchors
Chr01 123381654-146487023 Chr01 15246434-38351657 JCVI_TKOH_00036 · 714 gene pairs TkA01G493010 | LXL04_001979 | 96.1% | sequence_supported_annotation_or_model_conflict | Review TkA01G493020 | LXL04_001979 | 98.6% | sequence_supported_annotation_or_model_conflict | Review TkA01G493370 | LXL04_001970 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA01G493400 | LXL04_001969 | 100.0% | RBH_sequence_supported | Probable TkA01G493410 | LXL04_001968 | 100.0% | non_reciprocal_best_hit | Complex TkA01G493430 | LXL04_001967 | 100.0% | RBH_sequence_supported | Probable TkA01G493440 | LXL04_001963 | 65.5% | non_reciprocal_best_hit | Complex TkA01G493550 | LXL04_001966 | 100.0% | non_reciprocal_best_hit | Complex TkA01G493860 | LXL04_001963 | 88.2% | non_reciprocal_best_hit | Complex TkA01G494010 | LXL04_001963 | 94.8% | multi_source_to_OH1004 | Complex TkA01G494020 | LXL04_001962 | 89.3% | multi_source_to_OH1004 | Complex TkA01G494070 | LXL04_001960 | 98.8% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00036 Chr01:123381654-146487023 Chr01:15246434-38351657 mixed 714 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 714 · Showing 1–200 · Page 1/4

TkA01G493010 → LXL04_001979
96.1%
TkA01G493020 → LXL04_001979
98.6%
TkA01G493370 → LXL04_001970
99.7%
TkA01G493400 → LXL04_001969
100.0%
TkA01G493410 → LXL04_001968
100.0%
TkA01G493430 → LXL04_001967
100.0%
TkA01G493440 → LXL04_001963
65.5%
TkA01G493550 → LXL04_001966
100.0%
TkA01G493860 → LXL04_001963
88.2%
TkA01G494010 → LXL04_001963
94.8%
TkA01G494020 → LXL04_001962
89.3%
TkA01G494070 → LXL04_001960
98.8%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G493010LXL04_001979JCVI_TKOH_0003696.1100.0 / 11.97Review
TkA01G493020LXL04_001979JCVI_TKOH_0003698.697.297 / 27.144Review
TkA01G493370LXL04_001970JCVI_TKOH_0003699.7100.0 / 91.328Strict
TkA01G493400LXL04_001969JCVI_TKOH_00036100.0100.0 / 72.585Probable
TkA01G493410LXL04_001968JCVI_TKOH_00036100.091.228 / 91.228Complex
TkA01G493430LXL04_001967JCVI_TKOH_00036100.091.958 / 73.259Probable
TkA01G493440LXL04_001963JCVI_TKOH_0003665.5100.0 / 100.0Complex
TkA01G493550LXL04_001966JCVI_TKOH_00036100.083.168 / 35.593Complex
TkA01G493860LXL04_001963JCVI_TKOH_0003688.291.475 / 75.269Complex
TkA01G494010LXL04_001963JCVI_TKOH_0003694.899.721 / 98.118Complex
TkA01G494020LXL04_001962JCVI_TKOH_0003689.3100.0 / 100.0Complex
TkA01G494070LXL04_001960JCVI_TKOH_0003698.898.394 / 68.82Complex
TkA01G494130LXL04_001962JCVI_TKOH_0003696.3100.0 / 33.863Review
TkA01G494220LXL04_001958JCVI_TKOH_0003699.391.781 / 61.468Review
TkA01G494430LXL04_001956JCVI_TKOH_0003674.8100.0 / 100.0Review
TkA01G494620LXL04_001954JCVI_TKOH_0003681.099.757 / 89.716Complex
TkA01G495040LXL04_001954JCVI_TKOH_0003696.091.484 / 79.869Complex
TkA01G495050LXL04_001953JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G495250LXL04_001952JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G495330LXL04_001950JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G495380LXL04_001949JCVI_TKOH_0003687.499.402 / 88.419Review
TkA01G495400LXL04_001948JCVI_TKOH_0003695.099.595 / 98.797Complex
TkA01G495420LXL04_001947JCVI_TKOH_0003676.1100.0 / 100.0Complex
TkA01G495440LXL04_001946JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G495480LXL04_001945JCVI_TKOH_0003695.1100.0 / 100.0Strict
TkA01G495730LXL04_001944JCVI_TKOH_0003638.992.178 / 50.12Complex
TkA01G495780LXL04_001944JCVI_TKOH_00036100.099.301 / 68.269Complex
TkA01G495950LXL04_001948JCVI_TKOH_0003692.299.595 / 98.797Complex
TkA01G495960LXL04_001947JCVI_TKOH_0003699.294.118 / 73.62Complex
TkA01G495970LXL04_001946JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G495990LXL04_001945JCVI_TKOH_0003691.0100.0 / 47.913Complex
TkA01G496370LXL04_001944JCVI_TKOH_0003643.092.857 / 91.587Complex
TkA01G496380LXL04_001944JCVI_TKOH_0003694.597.394 / 67.909Complex
TkA01G496500LXL04_001944JCVI_TKOH_0003675.692.167 / 42.788Complex
TkA01G496590LXL04_001943JCVI_TKOH_00036100.092.717 / 49.403Review
TkA01G496620LXL04_001943JCVI_TKOH_0003695.794.774 / 47.91Review
TkA01G496870LXL04_001941JCVI_TKOH_0003699.3100.0 / 100.0Strict
TkA01G497220LXL04_001936JCVI_TKOH_00036100.090.148 / 65.946Review
TkA01G497630LXL04_001930JCVI_TKOH_0003696.187.5 / 16.903Review
TkA01G497730LXL04_001930JCVI_TKOH_0003692.197.115 / 25.312Complex
TkA01G497910LXL04_001930JCVI_TKOH_0003699.097.125 / 25.312Review
TkA01G498110LXL04_001929JCVI_TKOH_0003699.796.623 / 100.0Complex
TkA01G498270LXL04_001926JCVI_TKOH_0003699.7100.0 / 88.201Complex
TkA01G498280LXL04_001925JCVI_TKOH_0003699.5100.0 / 100.0Strict
TkA01G498290LXL04_001924JCVI_TKOH_0003697.6100.0 / 100.0Review
TkA01G498300LXL04_001923JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G498340LXL04_001921JCVI_TKOH_0003699.4100.0 / 100.0Strict
TkA01G498350LXL04_001920JCVI_TKOH_0003695.799.761 / 99.762Strict
TkA01G498380LXL04_001919JCVI_TKOH_0003693.499.167 / 53.912Complex
TkA01G498590LXL04_001918JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G498600LXL04_001917JCVI_TKOH_0003697.1100.0 / 93.774Review
TkA01G498650LXL04_001916JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G498680LXL04_001915JCVI_TKOH_0003698.999.22 / 83.511Strict
TkA01G498740LXL04_001914JCVI_TKOH_00036100.0100.0 / 61.132Complex
TkA01G498860LXL04_001912JCVI_TKOH_0003677.5100.0 / 88.304Review
TkA01G499130LXL04_001909JCVI_TKOH_00036100.0100.0 / 95.187Strict
TkA01G499490LXL04_001908JCVI_TKOH_00036100.067.039 / 38.462Complex
TkA01G499660LXL04_001906JCVI_TKOH_0003660.499.041 / 98.438Review
TkA01G499710LXL04_001905JCVI_TKOH_0003698.999.567 / 64.336Review
TkA01G499770LXL04_001903JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G499780LXL04_001902JCVI_TKOH_0003699.4100.0 / 100.0Complex
TkA01G499790LXL04_001901JCVI_TKOH_0003699.694.118 / 100.0Strict
TkA01G499800LXL04_001900JCVI_TKOH_0003699.3100.0 / 100.0Strict
TkA01G499830LXL04_001897JCVI_TKOH_0003687.696.774 / 81.333Review
TkA01G500440LXL04_001895JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G500520LXL04_001893JCVI_TKOH_00036100.082.609 / 82.609Strict
TkA01G500540LXL04_001892JCVI_TKOH_0003698.699.291 / 9.504Review
TkA01G500550LXL04_001892JCVI_TKOH_0003694.296.552 / 14.121Complex
TkA01G500560LXL04_001891JCVI_TKOH_0003699.168.023 / 99.574Review
TkA01G500620LXL04_001890JCVI_TKOH_0003698.484.351 / 61.905Review
TkA01G500750LXL04_001889JCVI_TKOH_00036100.098.684 / 92.213Complex
TkA01G501350LXL04_001886JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G502050LXL04_001885JCVI_TKOH_0003696.7100.0 / 100.0Strict
TkA01G502230LXL04_001882JCVI_TKOH_00036100.0100.0 / 96.25Strict
TkA01G502260LXL04_001881JCVI_TKOH_0003698.6100.0 / 100.0Strict
TkA01G502280LXL04_001880JCVI_TKOH_0003689.8100.0 / 100.0Review
TkA01G502320LXL04_001878JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G502730LXL04_001875JCVI_TKOH_0003699.1100.0 / 100.0Strict
TkA01G502900LXL04_001874JCVI_TKOH_00036100.083.14 / 36.02Complex
TkA01G503320LXL04_001856JCVI_TKOH_0003695.397.052 / 96.145Complex
TkA01G503370LXL04_001856JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G503560LXL04_001855JCVI_TKOH_00036100.078.779 / 48.393Review
TkA01G503660LXL04_001854JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G503690LXL04_001853JCVI_TKOH_00036100.093.168 / 37.783Review
TkA01G503810LXL04_001851JCVI_TKOH_0003699.7100.0 / 88.235Strict
TkA01G504010LXL04_001850JCVI_TKOH_0003689.9100.0 / 100.0Review
TkA01G504100LXL04_001847JCVI_TKOH_0003697.995.27 / 23.115Review
TkA01G504110LXL04_001847JCVI_TKOH_00036100.025.0 / 5.902Complex
TkA01G504120LXL04_001846JCVI_TKOH_0003699.4100.0 / 53.481Review
TkA01G504180LXL04_001845JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G504290LXL04_001844JCVI_TKOH_0003699.489.373 / 100.0Strict
TkA01G504320LXL04_001843JCVI_TKOH_0003698.296.784 / 28.252Review
TkA01G504490LXL04_001842JCVI_TKOH_00036100.098.131 / 79.949Probable
TkA01G504500LXL04_001841JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G504520LXL04_001840JCVI_TKOH_00036100.095.599 / 57.164Review
TkA01G504850LXL04_001837JCVI_TKOH_0003698.2100.0 / 61.693Review
TkA01G504930LXL04_001836JCVI_TKOH_0003699.9100.0 / 100.0Complex
TkA01G504950LXL04_001835JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G505000LXL04_001834JCVI_TKOH_0003699.0100.0 / 100.0Strict
TkA01G505340LXL04_001833JCVI_TKOH_0003699.5100.0 / 100.0Strict
TkA01G505430LXL04_001831JCVI_TKOH_0003698.599.275 / 87.261Strict
TkA01G506870LXL04_001825JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G506890LXL04_001824JCVI_TKOH_0003698.996.581 / 100.0Strict
TkA01G506990LXL04_001822JCVI_TKOH_00036100.075.0 / 30.717Review
TkA01G507250LXL04_001820JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G507260LXL04_001819JCVI_TKOH_0003685.5100.0 / 100.0Review
TkA01G507650LXL04_001815JCVI_TKOH_0003683.1100.0 / 100.0Review
TkA01G508400LXL04_001810JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G508450LXL04_001809JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G508570LXL04_001806JCVI_TKOH_0003699.7100.0 / 63.169Complex
TkA01G509200LXL04_001802JCVI_TKOH_0003699.0100.0 / 100.0Strict
TkA01G509320LXL04_001800JCVI_TKOH_0003688.3100.0 / 100.0Complex
TkA01G509410LXL04_001799JCVI_TKOH_00036100.084.713 / 67.172Review
TkA01G509450LXL04_001798JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G509480LXL04_001797JCVI_TKOH_0003699.698.028 / 84.82Strict
TkA01G509520LXL04_001795JCVI_TKOH_0003698.7100.0 / 100.0Review
TkA01G509530LXL04_001794JCVI_TKOH_0003699.173.826 / 32.738Complex
TkA01G509540LXL04_001794JCVI_TKOH_00036100.0100.0 / 34.226Review
TkA01G509750LXL04_001791JCVI_TKOH_0003699.5100.0 / 91.928Complex
TkA01G509990LXL04_001791JCVI_TKOH_0003699.1100.0 / 100.0Complex
TkA01G510070LXL04_001789JCVI_TKOH_00036100.099.259 / 19.007Review
TkA01G510090LXL04_001789JCVI_TKOH_00036100.0100.0 / 19.007Review
TkA01G510260LXL04_001789JCVI_TKOH_0003699.1100.0 / 31.631Review
TkA01G510630LXL04_001783JCVI_TKOH_0003699.638.691 / 24.44Complex
TkA01G510640LXL04_001782JCVI_TKOH_00036100.0100.0 / 50.312Review
TkA01G510920LXL04_001778JCVI_TKOH_0003699.0100.0 / 100.0Complex
TkA01G511050LXL04_001776JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G512000LXL04_001791JCVI_TKOH_0003699.5100.0 / 91.928Complex
TkA01G512040LXL04_001791JCVI_TKOH_0003698.4100.0 / 55.605Review
TkA01G512070LXL04_001783JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G512080LXL04_001782JCVI_TKOH_0003679.3100.0 / 50.312Complex
TkA01G512140LXL04_001781JCVI_TKOH_00036100.096.0 / 33.803Review
TkA01G512280LXL04_001778JCVI_TKOH_0003698.0100.0 / 100.0Complex
TkA01G512340LXL04_001776JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G512560LXL04_001775JCVI_TKOH_0003690.696.296 / 67.66Complex
TkA01G512580LXL04_001774JCVI_TKOH_00036100.094.318 / 94.533Strict
TkA01G512790LXL04_001770JCVI_TKOH_00036100.073.759 / 33.657Review
TkA01G512800LXL04_001769JCVI_TKOH_0003694.589.617 / 14.101Complex
TkA01G512890LXL04_001768JCVI_TKOH_0003699.5100.0 / 100.0Review
TkA01G513140LXL04_001766JCVI_TKOH_0003699.6100.0 / 100.0Complex
TkA01G513200LXL04_001765JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G514010LXL04_001762JCVI_TKOH_0003665.879.012 / 77.593Complex
TkA01G514720LXL04_001760JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G514840LXL04_001758JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G514860LXL04_001757JCVI_TKOH_0003694.2100.0 / 100.0Probable
TkA01G514880LXL04_001756JCVI_TKOH_0003696.1100.0 / 100.0Strict
TkA01G515040LXL04_001754JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G515080LXL04_001751JCVI_TKOH_0003699.0100.0 / 59.119Review
TkA01G515090LXL04_001750JCVI_TKOH_00036100.0100.0 / 43.539Review
TkA01G515240LXL04_001749JCVI_TKOH_0003699.6100.0 / 95.726Complex
TkA01G515280LXL04_001748JCVI_TKOH_0003698.397.071 / 50.989Review
TkA01G515300LXL04_001748JCVI_TKOH_0003696.0100.0 / 49.451Review
TkA01G515380LXL04_001746JCVI_TKOH_0003690.699.552 / 99.554Complex
TkA01G515390LXL04_001745JCVI_TKOH_0003699.1100.0 / 100.0Complex
TkA01G515400LXL04_001744JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G515410LXL04_001743JCVI_TKOH_0003699.0100.0 / 100.0Strict
TkA01G515450LXL04_001742JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G515460LXL04_001741JCVI_TKOH_0003699.896.119 / 79.584Complex
TkA01G515560LXL04_001739JCVI_TKOH_00036100.0100.0 / 76.018Probable
TkA01G515620LXL04_001737JCVI_TKOH_0003698.498.417 / 55.689Review
TkA01G515840LXL04_001734JCVI_TKOH_0003694.370.833 / 70.149Complex
TkA01G516060LXL04_001728JCVI_TKOH_0003698.499.59 / 100.0Strict
TkA01G516130LXL04_001725JCVI_TKOH_00036100.0100.0 / 92.251Complex
TkA01G516140LXL04_001724JCVI_TKOH_0003699.6100.0 / 100.0Complex
TkA01G516260LXL04_001722JCVI_TKOH_0003696.3100.0 / 100.0Complex
TkA01G516280LXL04_001721JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G516290LXL04_001720JCVI_TKOH_0003699.4100.0 / 100.0Strict
TkA01G516320LXL04_001718JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G516330LXL04_001717JCVI_TKOH_0003687.3100.0 / 100.0Review
TkA01G516350LXL04_001716JCVI_TKOH_0003698.671.575 / 88.936Probable
TkA01G516360LXL04_001715JCVI_TKOH_0003699.4100.0 / 100.0Strict
TkA01G516760LXL04_001712JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G516770LXL04_001711JCVI_TKOH_0003687.183.333 / 44.737Review
TkA01G516800LXL04_001710JCVI_TKOH_0003698.799.674 / 99.029Complex
TkA01G516830LXL04_001709JCVI_TKOH_0003684.9100.0 / 100.0Review
TkA01G517420LXL04_001707JCVI_TKOH_0003699.0100.0 / 39.544Review
TkA01G518070LXL04_001702JCVI_TKOH_0003695.294.771 / 29.412Review
TkA01G518220LXL04_001701JCVI_TKOH_0003698.9100.0 / 97.66Strict
TkA01G518240LXL04_001700JCVI_TKOH_00036100.0100.0 / 70.745Probable
TkA01G518270LXL04_001699JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G518320LXL04_001698JCVI_TKOH_0003695.999.094 / 94.308Complex
TkA01G518330LXL04_001697JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G518350LXL04_001696JCVI_TKOH_00036100.088.35 / 92.857Strict
TkA01G518370LXL04_001693JCVI_TKOH_0003663.887.665 / 36.945Complex
TkA01G518440LXL04_001693JCVI_TKOH_00036100.099.762 / 74.6Probable
TkA01G518520LXL04_001692JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G518570LXL04_001691JCVI_TKOH_00036100.099.59 / 96.047Strict
TkA01G518660LXL04_001689JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G519130LXL04_001687JCVI_TKOH_0003678.999.278 / 99.647Complex
TkA01G519140LXL04_001687JCVI_TKOH_0003693.2100.0 / 95.936Complex
TkA01G519160LXL04_001684JCVI_TKOH_00036100.0100.0 / 93.816Complex
TkA01G519210LXL04_001682JCVI_TKOH_0003699.198.182 / 95.575Complex
TkA01G519410LXL04_001681JCVI_TKOH_0003687.577.465 / 25.37Complex
TkA01G519430LXL04_001682JCVI_TKOH_0003669.498.113 / 95.575Complex
TkA01G519440LXL04_001680JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G519690LXL04_001678JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G519710LXL04_001677JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G519800LXL04_001675JCVI_TKOH_00036100.0100.0 / 33.123Review
TkA01G519840LXL04_001673JCVI_TKOH_0003699.5100.0 / 44.351Review
TkA01G519850LXL04_001673JCVI_TKOH_00036100.094.444 / 49.791Review