Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00242

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 113

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00242

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00242 Chr05 91168869-96801159 Chr04 124752550-129435728 mixed High 113 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00242`	Chr05:91168869-96801159	Chr04:124752550-129435728	mixed	113	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 113 · Showing 1–113 · Page 1/1

Download All Anchors TSV

TkA05G367090 → LXL04_021222

99.3%

TkA05G367200 → LXL04_021215

94.1%

TkA05G367290 → LXL04_021216

89.0%

TkA05G367690 → LXL04_021220

100.0%

TkA05G368130 → LXL04_021222

100.0%

TkA05G368450 → LXL04_021224

100.0%

TkA05G368890 → LXL04_021224

100.0%

TkA05G369110 → LXL04_021229

97.0%

TkA05G369150 → LXL04_021230

77.5%

TkA05G369250 → LXL04_021231

100.0%

TkA05G369260 → LXL04_021232

99.7%

TkA05G369280 → LXL04_021233

99.3%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA05G367090`	`LXL04_021222`	`JCVI_TKOH_00242`	99.3	100.0 / 100.0	Complex
`TkA05G367200`	`LXL04_021215`	`JCVI_TKOH_00242`	94.1	100.0 / 50.599	Review
`TkA05G367290`	`LXL04_021216`	`JCVI_TKOH_00242`	89.0	70.36 / 49.735	Complex
`TkA05G367690`	`LXL04_021220`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G368130`	`LXL04_021222`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Review
`TkA05G368450`	`LXL04_021224`	`JCVI_TKOH_00242`	100.0	100.0 / 78.351	Review
`TkA05G368890`	`LXL04_021224`	`JCVI_TKOH_00242`	100.0	100.0 / 78.351	Complex
`TkA05G369110`	`LXL04_021229`	`JCVI_TKOH_00242`	97.0	100.0 / 66.447	Review
`TkA05G369150`	`LXL04_021230`	`JCVI_TKOH_00242`	77.5	97.75 / 85.111	Review
`TkA05G369250`	`LXL04_021231`	`JCVI_TKOH_00242`	100.0	100.0 / 80.159	Complex
`TkA05G369260`	`LXL04_021232`	`JCVI_TKOH_00242`	99.7	100.0 / 100.0	Strict
`TkA05G369280`	`LXL04_021233`	`JCVI_TKOH_00242`	99.3	100.0 / 100.0	Strict
`TkA05G369710`	`LXL04_021236`	`JCVI_TKOH_00242`	77.7	93.525 / 88.77	Review
`TkA05G370710`	`LXL04_021243`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G371450`	`LXL04_021247`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G371500`	`LXL04_021248`	`JCVI_TKOH_00242`	99.1	97.368 / 28.316	Review
`TkA05G372100`	`LXL04_021254`	`JCVI_TKOH_00242`	98.6	99.378 / 86.468	Complex
`TkA05G372460`	`LXL04_021255`	`JCVI_TKOH_00242`	99.8	100.0 / 100.0	Strict
`TkA05G372780`	`LXL04_021256`	`JCVI_TKOH_00242`	99.4	96.471 / 36.771	Review
`TkA05G372830`	`LXL04_021257`	`JCVI_TKOH_00242`	87.4	100.0 / 100.0	Review
`TkA05G373630`	`LXL04_021262`	`JCVI_TKOH_00242`	70.9	58.333 / 98.319	Review
`TkA05G373640`	`LXL04_021264`	`JCVI_TKOH_00242`	82.3	100.0 / 87.427	Complex
`TkA05G373700`	`LXL04_021266`	`JCVI_TKOH_00242`	98.8	100.0 / 85.312	Strict
`TkA05G373830`	`LXL04_021268`	`JCVI_TKOH_00242`	99.4	100.0 / 100.0	Complex
`TkA05G373840`	`LXL04_021269`	`JCVI_TKOH_00242`	92.8	100.0 / 98.364	Probable
`TkA05G374480`	`LXL04_021270`	`JCVI_TKOH_00242`	84.1	100.0 / 100.0	Complex
`TkA05G374570`	`LXL04_021276`	`JCVI_TKOH_00242`	84.8	100.0 / 99.081	Complex
`TkA05G375040`	`LXL04_021270`	`JCVI_TKOH_00242`	85.4	100.0 / 100.0	Complex
`TkA05G375160`	`LXL04_021271`	`JCVI_TKOH_00242`	83.4	98.03 / 82.783	Complex
`TkA05G375880`	`LXL04_021283`	`JCVI_TKOH_00242`	98.0	94.286 / 74.717	Complex
`TkA05G375980`	`LXL04_021276`	`JCVI_TKOH_00242`	85.0	100.0 / 99.081	Review
`TkA05G375990`	`LXL04_021277`	`JCVI_TKOH_00242`	81.2	69.672 / 76.344	Review
`TkA05G376270`	`LXL04_021278`	`JCVI_TKOH_00242`	98.2	81.955 / 29.301	Complex
`TkA05G376600`	`LXL04_021273`	`JCVI_TKOH_00242`	67.6	95.506 / 31.33	Complex
`TkA05G376630`	`LXL04_021283`	`JCVI_TKOH_00242`	99.2	84.452 / 90.189	Complex
`TkA05G376640`	`LXL04_021275`	`JCVI_TKOH_00242`	90.8	66.667 / 86.207	Review
`TkA05G376710`	`LXL04_021276`	`JCVI_TKOH_00242`	100.0	85.556 / 28.309	Review
`TkA05G377050`	`LXL04_021278`	`JCVI_TKOH_00242`	66.4	100.0 / 100.0	Review
`TkA05G377100`	`LXL04_021280`	`JCVI_TKOH_00242`	100.0	97.987 / 84.393	Complex
`TkA05G377350`	`LXL04_021283`	`JCVI_TKOH_00242`	98.9	100.0 / 100.0	Complex
`TkA05G377580`	`LXL04_021285`	`JCVI_TKOH_00242`	95.3	97.959 / 86.486	Strict
`TkA05G377650`	`LXL04_021286`	`JCVI_TKOH_00242`	100.0	99.353 / 96.389	Complex
`TkA05G377690`	`LXL04_021289`	`JCVI_TKOH_00242`	100.0	100.0 / 93.573	Complex
`TkA05G377700`	`LXL04_021289`	`JCVI_TKOH_00242`	54.3	81.663 / 86.632	Complex
`TkA05G377820`	`LXL04_021290`	`JCVI_TKOH_00242`	46.5	100.0 / 100.0	Complex
`TkA05G377930`	`LXL04_021291`	`JCVI_TKOH_00242`	89.8	89.716 / 43.036	Review
`TkA05G378080`	`LXL04_021292`	`JCVI_TKOH_00242`	99.5	100.0 / 100.0	Strict
`TkA05G378120`	`LXL04_021294`	`JCVI_TKOH_00242`	70.5	100.0 / 100.0	Review
`TkA05G378140`	`LXL04_021296`	`JCVI_TKOH_00242`	100.0	82.609 / 88.372	Complex
`TkA05G378290`	`LXL04_021298`	`JCVI_TKOH_00242`	98.7	100.0 / 100.0	Review
`TkA05G378350`	`LXL04_021302`	`JCVI_TKOH_00242`	98.6	100.0 / 100.0	Strict
`TkA05G378360`	`LXL04_021303`	`JCVI_TKOH_00242`	99.7	100.0 / 100.0	Strict
`TkA05G378540`	`LXL04_021304`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Review
`TkA05G378560`	`LXL04_021305`	`JCVI_TKOH_00242`	48.5	95.098 / 37.891	Complex
`TkA05G378660`	`LXL04_021305`	`JCVI_TKOH_00242`	99.4	100.0 / 94.922	Complex
`TkA05G378680`	`LXL04_021306`	`JCVI_TKOH_00242`	96.3	98.61 / 98.595	Strict
`TkA05G378720`	`LXL04_021309`	`JCVI_TKOH_00242`	99.8	100.0 / 100.0	Strict
`TkA05G378730`	`LXL04_021310`	`JCVI_TKOH_00242`	97.5	100.0 / 58.01	Review
`TkA05G378890`	`LXL04_021311`	`JCVI_TKOH_00242`	99.5	100.0 / 54.015	Review
`TkA05G379070`	`LXL04_021312`	`JCVI_TKOH_00242`	99.6	100.0 / 58.355	Review
`TkA05G379420`	`LXL04_021315`	`JCVI_TKOH_00242`	95.3	100.0 / 90.83	Strict
`TkA05G379470`	`LXL04_021316`	`JCVI_TKOH_00242`	99.1	100.0 / 100.0	Strict
`TkA05G380190`	`LXL04_021318`	`JCVI_TKOH_00242`	99.0	100.0 / 100.0	Strict
`TkA05G380210`	`LXL04_021319`	`JCVI_TKOH_00242`	93.8	99.373 / 99.747	Probable
`TkA05G380300`	`LXL04_021322`	`JCVI_TKOH_00242`	99.4	100.0 / 100.0	Strict
`TkA05G380690`	`LXL04_021327`	`JCVI_TKOH_00242`	100.0	100.0 / 96.552	Strict
`TkA05G380700`	`LXL04_021328`	`JCVI_TKOH_00242`	99.1	100.0 / 100.0	Strict
`TkA05G380730`	`LXL04_021329`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Review
`TkA05G380910`	`LXL04_021332`	`JCVI_TKOH_00242`	99.5	100.0 / 100.0	Strict
`TkA05G381190`	`LXL04_021336`	`JCVI_TKOH_00242`	97.7	93.362 / 99.849	Complex
`TkA05G381260`	`LXL04_021337`	`JCVI_TKOH_00242`	98.1	90.756 / 60.335	Complex
`TkA05G381510`	`LXL04_021338`	`JCVI_TKOH_00242`	98.4	100.0 / 95.639	Strict
`TkA05G381530`	`LXL04_021339`	`JCVI_TKOH_00242`	98.7	100.0 / 100.0	Strict
`TkA05G381940`	`LXL04_021348`	`JCVI_TKOH_00242`	99.1	100.0 / 100.0	Strict
`TkA05G382020`	`LXL04_021350`	`JCVI_TKOH_00242`	89.1	100.0 / 82.105	Complex
`TkA05G383050`	`LXL04_021356`	`JCVI_TKOH_00242`	99.7	100.0 / 100.0	Strict
`TkA05G383390`	`LXL04_021359`	`JCVI_TKOH_00242`	88.4	100.0 / 100.0	Review
`TkA05G383520`	`LXL04_021360`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G383630`	`LXL04_021361`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G383700`	`LXL04_021364`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G384080`	`LXL04_021387`	`JCVI_TKOH_00242`	89.2	100.0 / 100.0	Complex
`TkA05G384120`	`LXL04_021386`	`JCVI_TKOH_00242`	95.0	96.648 / 99.808	Complex
`TkA05G384130`	`LXL04_021383`	`JCVI_TKOH_00242`	100.0	100.0 / 63.09	Complex
`TkA05G384160`	`LXL04_021382`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G384170`	`LXL04_021381`	`JCVI_TKOH_00242`	69.5	100.0 / 100.0	Review
`TkA05G384220`	`LXL04_021378`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G384610`	`LXL04_021366`	`JCVI_TKOH_00242`	100.0	77.451 / 53.02	Review
`TkA05G384860`	`LXL04_021370`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G384900`	`LXL04_021371`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G384910`	`LXL04_021372`	`JCVI_TKOH_00242`	95.5	90.164 / 64.327	Complex
`TkA05G385000`	`LXL04_021373`	`JCVI_TKOH_00242`	84.8	100.0 / 100.0	Review
`TkA05G385260`	`LXL04_021375`	`JCVI_TKOH_00242`	93.2	90.964 / 75.587	Probable
`TkA05G385610`	`LXL04_021378`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Complex
`TkA05G385660`	`LXL04_021382`	`JCVI_TKOH_00242`	99.5	100.0 / 100.0	Complex
`TkA05G385680`	`LXL04_021383`	`JCVI_TKOH_00242`	99.1	100.0 / 100.0	Complex
`TkA05G385690`	`LXL04_021386`	`JCVI_TKOH_00242`	96.0	100.0 / 91.731	Complex
`TkA05G385740`	`LXL04_021387`	`JCVI_TKOH_00242`	90.8	100.0 / 100.0	Complex
`TkA05G386180`	`LXL04_021389`	`JCVI_TKOH_00242`	99.1	100.0 / 94.215	Complex
`TkA05G386190`	`LXL04_021390`	`JCVI_TKOH_00242`	92.0	60.417 / 24.143	Complex
`TkA05G386380`	`LXL04_021396`	`JCVI_TKOH_00242`	100.0	50.714 / 41.52	Complex
`TkA05G386440`	`LXL04_021397`	`JCVI_TKOH_00242`	100.0	100.0 / 100.0	Strict
`TkA05G387240`	`LXL04_021401`	`JCVI_TKOH_00242`	97.6	100.0 / 100.0	Strict
`TkA05G388420`	`LXL04_021409`	`JCVI_TKOH_00242`	99.6	99.582 / 98.96	Complex
`TkA05G388430`	`LXL04_021410`	`JCVI_TKOH_00242`	100.0	97.163 / 23.702	Review
`TkA05G388470`	`LXL04_021411`	`JCVI_TKOH_00242`	98.9	96.043 / 64.32	Complex
`TkA05G388540`	`LXL04_021412`	`JCVI_TKOH_00242`	99.4	59.344 / 38.841	Complex
`TkA05G388560`	`LXL04_021412`	`JCVI_TKOH_00242`	97.8	55.901 / 19.313	Complex
`TkA05G389060`	`LXL04_021414`	`JCVI_TKOH_00242`	70.5	73.585 / 21.007	Complex
`TkA05G389080`	`LXL04_021414`	`JCVI_TKOH_00242`	98.8	99.401 / 28.819	Review
`TkA05G389340`	`LXL04_021415`	`JCVI_TKOH_00242`	99.7	100.0 / 100.0	Strict
`TkA05G389410`	`LXL04_021416`	`JCVI_TKOH_00242`	99.7	100.0 / 100.0	Strict
`TkA05G389420`	`LXL04_021418`	`JCVI_TKOH_00242`	100.0	100.0 / 87.143	Complex
`TkA05G389450`	`LXL04_021419`	`JCVI_TKOH_00242`	98.4	100.0 / 100.0	Strict