LXL04_021268 | RubberDandelionOmics

Gene overview

LXL04_021268

Reference: OH-1004 Chr: Chr04 Coordinates: 126155516-126158663 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1596 bp · LXL04_021268|LXL04_021268|OH1004|cDNA

ATGCACCATCTTCCATCGGTGATTCTAAATCACTTAATCTCTGTCTCTTCAATGTTTAAGCTTTTCACTACGCTTCTCATTCTCTGGAGTTTCGGTTCGTCGTCTTTATCATCCGCTTTGCTGATTTCCCCGACGCTAGGATCACGTTCGATACTACGTACTATTAAGCGAGGCGTTGATCGACCTGGTTTGGTGGTGGATTTGAACGCCACCAATTTCGATACAGTTCTCAAGGAAACCCCTGCTACTTACGTCATTAT...

CDS

Download CDS FASTA

1596 bp · LXL04_021268|LXL04_021268|OH1004|CDS

ATGCACCATCTTCCATCGGTGATTCTAAATCACTTAATCTCTGTCTCTTCAATGTTTAAGCTTTTCACTACGCTTCTCATTCTCTGGAGTTTCGGTTCGTCGTCTTTATCATCCGCTTTGCTGATTTCCCCGACGCTAGGATCACGTTCGATACTACGTACTATTAAGCGAGGCGTTGATCGACCTGGTTTGGTGGTGGATTTGAACGCCACCAATTTCGATACAGTTCTCAAGGAAACCCCTGCTACTTACGTCATTAT...

Protein

Download Protein FASTA

531 aa · LXL04_021268|LXL04_021268|OH1004|PROTEIN

MHHLPSVILNHLISVSSMFKLFTTLLILWSFGSSSLSSALLISPTLGSRSILRTIKRGVDRPGLVVDLNATNFDTVLKETPATYVIIEFYAHWCPACRNYKPQYEKVARVFNGADAAHPGIILLTRLDCANKLNVKLCGIFSVRYFPVLLWGPPSKFVIARYDGKKVKSEINLIEDWETSQLILQWINTQLKSSFELEDEKFEHEEVLQLNVSDSGQIARAIFDVEESTTIFFDNILEHKMIKSDTRTTLIKFLQLMVAH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021268`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021268

Location Chr04:126155516-126158663 (-)

Description Similar to QSOX1: Sulfhydryl oxidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g15020`	Sulfhydryl oxidase involved in the regulation of cation homeostasis.	An Arabidopsis quiescin-sulfhydryl oxidase regulates cation homeostasis at the root symplast-xylem interface.2007 · DOI: 10.1038/sj.emboj.7601757
`At2g01270`	Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0552500`	Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021268 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0043157 response to cation stress Biological Process

GO:0043268 positive regulation of potassium ion transport Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0003756 protein disulfide isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT1G15020

ath:AT2G01270

dosa:Os05g0552500

gga:373914

xla:447270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.341

Rank 1 · LXL04_021268 · OH-1004

Endoplasmic reticulum0.307

Rank 2 · LXL04_021268 · OH-1004

Lysosome / Vacuole0.153

Rank 3 · LXL04_021268 · OH-1004

Cytoplasm0.142

Rank 4 · LXL04_021268 · OH-1004

Cell membrane0.094

Rank 5 · LXL04_021268 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085.27Thioredoxin65-171 aa

PF04777.19Evr1_Alr328-407 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021268	`PF00085.27`	Thioredoxin	65	171	1e-12	48.7
LXL04_021268	`PF04777.19`	Evr1_Alr	328	407	1e-20	74.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W4J3`	Arabidopsis thaliana	Sulfhydryl oxidase 1	56.970%	Swiss-Prot	strong database homology
`Q9ZU40`	Arabidopsis thaliana	Sulfhydryl oxidase 2	57.708%	Swiss-Prot	strong database homology
`Q6AUC6`	Oryza sativa subsp. japonica	Sulfhydryl oxidase 1	55.274%	Swiss-Prot	strong database homology

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