Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00231
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 634
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00231

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00231 Chr05 23840-24371060 Chr04 18932311-41076231 mixed High 200 anchors
Chr05 23840-24371060 Chr04 18932311-41076231 JCVI_TKOH_00231 · 634 gene pairs TkA05G020370 | LXL04_019121 | 100.0% | multi_source_to_OH1004 | Complex TkA05G020440 | LXL04_019123 | 97.2% | multi_source_to_OH1004 | Complex TkA05G020460 | LXL04_019124 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA05G020480 | LXL04_019125 | 95.4% | multi_source_to_OH1004 | Complex TkA05G020640 | LXL04_019126 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA05G020790 | LXL04_019127 | 99.8% | RBH_high_identity_coverage_synteny | Strict TkA05G021010 | LXL04_019129 | 52.4% | multi_source_to_OH1004 | Complex TkA05G021810 | LXL04_019131 | 63.7% | multi_candidate_from_TK1151 | Complex TkA05G021910 | LXL04_019130 | 63.2% | multi_source_to_OH1004 | Complex TkA05G021950 | LXL04_019134 | 94.7% | RBH_sequence_supported | Probable TkA05G022060 | LXL04_019135 | 57.9% | non_reciprocal_best_hit | Complex TkA05G022200 | LXL04_019136 | 89.9% | RBH_below_probable_coverage_or_synteny_threshold | Review
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00231 Chr05:23840-24371060 Chr04:18932311-41076231 mixed 634 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 634 · Showing 201–400 · Page 2/4

TkA05G020370 → LXL04_019121
100.0%
TkA05G020440 → LXL04_019123
97.2%
TkA05G020460 → LXL04_019124
99.4%
TkA05G020480 → LXL04_019125
95.4%
TkA05G020640 → LXL04_019126
99.7%
TkA05G020790 → LXL04_019127
99.8%
TkA05G021010 → LXL04_019129
52.4%
TkA05G021810 → LXL04_019131
63.7%
TkA05G021910 → LXL04_019130
63.2%
TkA05G021950 → LXL04_019134
94.7%
TkA05G022060 → LXL04_019135
57.9%
TkA05G022200 → LXL04_019136
89.9%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA05G020370LXL04_019121JCVI_TKOH_00231100.098.095 / 68.439Complex
TkA05G020440LXL04_019123JCVI_TKOH_0023197.2100.0 / 100.0Complex
TkA05G020460LXL04_019124JCVI_TKOH_0023199.4100.0 / 100.0Strict
TkA05G020480LXL04_019125JCVI_TKOH_0023195.4100.0 / 100.0Complex
TkA05G020640LXL04_019126JCVI_TKOH_0023199.791.808 / 93.839Strict
TkA05G020790LXL04_019127JCVI_TKOH_0023199.8100.0 / 100.0Strict
TkA05G021010LXL04_019129JCVI_TKOH_0023152.465.568 / 33.582Complex
TkA05G021810LXL04_019131JCVI_TKOH_0023163.786.071 / 56.049Complex
TkA05G021910LXL04_019130JCVI_TKOH_0023163.298.551 / 56.364Complex
TkA05G021950LXL04_019134JCVI_TKOH_0023194.7100.0 / 97.297Probable
TkA05G022060LXL04_019135JCVI_TKOH_0023157.999.065 / 36.585Complex
TkA05G022200LXL04_019136JCVI_TKOH_0023189.9100.0 / 43.344Review
TkA05G022210LXL04_019136JCVI_TKOH_00231100.096.255 / 39.783Review
TkA05G022270LXL04_019137JCVI_TKOH_00231100.098.79 / 80.858Complex
TkA05G022320LXL04_019138JCVI_TKOH_0023198.3100.0 / 100.0Strict
TkA05G022350LXL04_019140JCVI_TKOH_0023193.898.801 / 91.554Probable
TkA05G022370LXL04_019141JCVI_TKOH_0023198.7100.0 / 100.0Review
TkA05G022490LXL04_019143JCVI_TKOH_0023198.898.627 / 24.799Review
TkA05G022540LXL04_019143JCVI_TKOH_00231100.098.893 / 41.139Review
TkA05G022870LXL04_019144JCVI_TKOH_0023199.6100.0 / 97.88Complex
TkA05G023170LXL04_019146JCVI_TKOH_0023199.7100.0 / 100.0Strict
TkA05G023190LXL04_019147JCVI_TKOH_0023199.592.929 / 57.68Review
TkA05G023350LXL04_019149JCVI_TKOH_0023196.633.523 / 18.91Complex
TkA05G023420LXL04_019152JCVI_TKOH_00231100.099.361 / 68.958Review
TkA05G023440LXL04_019153JCVI_TKOH_0023199.792.371 / 100.0Complex
TkA05G023500LXL04_019155JCVI_TKOH_0023199.6100.0 / 100.0Strict
TkA05G023660LXL04_019157JCVI_TKOH_0023199.2100.0 / 100.0Strict
TkA05G024790LXL04_019163JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G024800LXL04_019164JCVI_TKOH_0023191.6100.0 / 100.0Probable
TkA05G024810LXL04_019165JCVI_TKOH_0023186.599.858 / 61.192Complex
TkA05G025070LXL04_019167JCVI_TKOH_00231100.097.884 / 38.866Review
TkA05G025110LXL04_019168JCVI_TKOH_0023198.998.892 / 90.38Strict
TkA05G025500LXL04_019170JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G025780LXL04_019172JCVI_TKOH_0023199.7100.0 / 57.19Review
TkA05G025800LXL04_019173JCVI_TKOH_0023199.497.512 / 30.735Review
TkA05G025810LXL04_019173JCVI_TKOH_0023198.6100.0 / 31.127Review
TkA05G025850LXL04_019174JCVI_TKOH_0023186.5100.0 / 46.941Review
TkA05G025980LXL04_019175JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G025990LXL04_019177JCVI_TKOH_0023199.4100.0 / 100.0Strict
TkA05G026010LXL04_019179JCVI_TKOH_00231100.0100.0 / 86.869Strict
TkA05G026030LXL04_019180JCVI_TKOH_00231100.034.559 / 24.607Complex
TkA05G026570LXL04_019184JCVI_TKOH_0023199.8100.0 / 100.0Strict
TkA05G026690LXL04_019185JCVI_TKOH_0023194.385.749 / 51.935Review
TkA05G026700LXL04_019185JCVI_TKOH_0023192.094.334 / 49.405Complex
TkA05G026720LXL04_019186JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G027340LXL04_019188JCVI_TKOH_00231100.0100.0 / 86.957Complex
TkA05G028880LXL04_019194JCVI_TKOH_0023199.3100.0 / 98.052Review
TkA05G028890LXL04_019195JCVI_TKOH_00231100.071.717 / 89.308Review
TkA05G028930LXL04_019196JCVI_TKOH_0023186.590.984 / 100.0Complex
TkA05G029070LXL04_019197JCVI_TKOH_00231100.089.457 / 50.269Review
TkA05G029110LXL04_019199JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G029260LXL04_019200JCVI_TKOH_0023187.4100.0 / 99.552Complex
TkA05G029980LXL04_019203JCVI_TKOH_0023185.898.492 / 75.556Review
TkA05G030050LXL04_019204JCVI_TKOH_0023199.6100.0 / 100.0Strict
TkA05G030160LXL04_019205JCVI_TKOH_00231100.0100.0 / 61.614Complex
TkA05G030220LXL04_019206JCVI_TKOH_0023199.4100.0 / 100.0Strict
TkA05G030290LXL04_019208JCVI_TKOH_0023199.6100.0 / 100.0Complex
TkA05G030310LXL04_019209JCVI_TKOH_0023199.0100.0 / 100.0Strict
TkA05G030320LXL04_019210JCVI_TKOH_0023196.3100.0 / 97.326Strict
TkA05G030450LXL04_019212JCVI_TKOH_0023154.593.035 / 93.802Complex
TkA05G030530LXL04_019219JCVI_TKOH_0023198.0100.0 / 82.884Complex
TkA05G030540LXL04_019219JCVI_TKOH_0023169.099.603 / 33.693Complex
TkA05G030680LXL04_019219JCVI_TKOH_0023197.167.476 / 18.733Complex
TkA05G030730LXL04_019219JCVI_TKOH_0023175.4100.0 / 82.884Complex
TkA05G031030LXL04_019219JCVI_TKOH_0023178.1100.0 / 64.555Complex
TkA05G031210LXL04_019219JCVI_TKOH_0023169.4100.0 / 38.005Complex
TkA05G031220LXL04_019219JCVI_TKOH_0023184.1100.0 / 28.032Complex
TkA05G031250LXL04_019225JCVI_TKOH_0023196.4100.0 / 100.0Complex
TkA05G031300LXL04_019227JCVI_TKOH_0023194.456.349 / 56.349Complex
TkA05G031320LXL04_019228JCVI_TKOH_0023167.2100.0 / 93.908Complex
TkA05G031330LXL04_019229JCVI_TKOH_0023184.6100.0 / 100.0Complex
TkA05G031390LXL04_019230JCVI_TKOH_0023198.499.65 / 60.169Complex
TkA05G031430LXL04_019219JCVI_TKOH_0023176.8100.0 / 82.884Complex
TkA05G031710LXL04_019219JCVI_TKOH_0023178.2100.0 / 82.884Complex
TkA05G031770LXL04_019219JCVI_TKOH_0023174.6100.0 / 82.884Complex
TkA05G031940LXL04_019225JCVI_TKOH_0023196.997.831 / 66.815Complex
TkA05G032210LXL04_019227JCVI_TKOH_0023195.856.349 / 56.349Complex
TkA05G032220LXL04_019228JCVI_TKOH_0023192.9100.0 / 71.322Complex
TkA05G032230LXL04_019229JCVI_TKOH_0023179.598.765 / 97.493Complex
TkA05G032330LXL04_019230JCVI_TKOH_0023197.8100.0 / 100.0Complex
TkA05G032350LXL04_019232JCVI_TKOH_0023196.5100.0 / 21.995Review
TkA05G032360LXL04_019232JCVI_TKOH_0023198.190.116 / 19.821Review
TkA05G032610LXL04_019235JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G032740LXL04_019239JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G032890LXL04_019241JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G032940LXL04_019242JCVI_TKOH_0023197.094.286 / 89.189Strict
TkA05G033120LXL04_019244JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G033220LXL04_019245JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G033340LXL04_019248JCVI_TKOH_0023199.3100.0 / 100.0Complex
TkA05G033710LXL04_019249JCVI_TKOH_00231100.078.1 / 22.91Complex
TkA05G033720LXL04_019249JCVI_TKOH_0023199.297.349 / 51.084Review
TkA05G033740LXL04_019250JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G034130LXL04_019252JCVI_TKOH_00231100.086.0 / 20.379Review
TkA05G034160LXL04_019253JCVI_TKOH_0023197.9100.0 / 100.0Strict
TkA05G034280LXL04_019254JCVI_TKOH_0023197.8100.0 / 100.0Strict
TkA05G034320LXL04_019255JCVI_TKOH_0023195.994.331 / 99.76Strict
TkA05G034630LXL04_019257JCVI_TKOH_0023194.1100.0 / 100.0Probable
TkA05G035090LXL04_019262JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G035220LXL04_019264JCVI_TKOH_0023199.5100.0 / 100.0Strict
TkA05G036050LXL04_019266JCVI_TKOH_0023173.794.022 / 97.085Complex
TkA05G036410LXL04_019270JCVI_TKOH_0023183.092.718 / 51.62Complex
TkA05G036810LXL04_019273JCVI_TKOH_0023197.0100.0 / 100.0Strict
TkA05G036820LXL04_019274JCVI_TKOH_0023199.4100.0 / 100.0Strict
TkA05G036830LXL04_019275JCVI_TKOH_0023199.2100.0 / 100.0Strict
TkA05G036910LXL04_019276JCVI_TKOH_0023195.4100.0 / 100.0Strict
TkA05G036920LXL04_019277JCVI_TKOH_0023190.1100.0 / 96.8Probable
TkA05G036930LXL04_019278JCVI_TKOH_0023176.398.246 / 51.515Review
TkA05G036950LXL04_019278JCVI_TKOH_0023181.391.954 / 42.105Complex
TkA05G036970LXL04_019278JCVI_TKOH_0023197.491.903 / 36.204Review
TkA05G037130LXL04_019279JCVI_TKOH_0023194.0100.0 / 100.0Probable
TkA05G037320LXL04_019280JCVI_TKOH_00231100.0100.0 / 80.114Strict
TkA05G037330LXL04_019281JCVI_TKOH_0023190.596.135 / 77.021Probable
TkA05G037870LXL04_019282JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G038150LXL04_019283JCVI_TKOH_00231100.087.0 / 26.935Review
TkA05G038180LXL04_019284JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G038190LXL04_019285JCVI_TKOH_0023198.2100.0 / 100.0Strict
TkA05G038210LXL04_019286JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G038220LXL04_019287JCVI_TKOH_0023199.6100.0 / 89.166Strict
TkA05G038260LXL04_019288JCVI_TKOH_0023194.3100.0 / 100.0Complex
TkA05G038270LXL04_019289JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G038500LXL04_019291JCVI_TKOH_0023198.0100.0 / 100.0Strict
TkA05G038530LXL04_019292JCVI_TKOH_0023179.794.565 / 72.426Review
TkA05G038540LXL04_019293JCVI_TKOH_0023196.7100.0 / 100.0Strict
TkA05G038810LXL04_019295JCVI_TKOH_0023197.3100.0 / 100.0Strict
TkA05G038880LXL04_019296JCVI_TKOH_0023199.2100.0 / 100.0Complex
TkA05G038910LXL04_019298JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G038920LXL04_019299JCVI_TKOH_0023198.7100.0 / 100.0Strict
TkA05G038970LXL04_019300JCVI_TKOH_0023195.5100.0 / 100.0Strict
TkA05G039350LXL04_019303JCVI_TKOH_0023191.7100.0 / 19.961Review
TkA05G039410LXL04_019304JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G039420LXL04_019305JCVI_TKOH_0023199.3100.0 / 100.0Complex
TkA05G040420LXL04_019312JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G040430LXL04_019314JCVI_TKOH_0023199.2100.0 / 100.0Complex
TkA05G040440LXL04_019315JCVI_TKOH_0023199.7100.0 / 100.0Complex
TkA05G040450LXL04_019316JCVI_TKOH_0023196.4100.0 / 100.0Complex
TkA05G040660LXL04_019317JCVI_TKOH_0023199.7100.0 / 86.105Review
TkA05G040670LXL04_019319JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G041960LXL04_019328JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G042020LXL04_019332JCVI_TKOH_0023195.399.737 / 71.645Complex
TkA05G042580LXL04_019312JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G042590LXL04_019314JCVI_TKOH_0023199.298.507 / 63.462Complex
TkA05G042610LXL04_019315JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G042780LXL04_019317JCVI_TKOH_0023199.5100.0 / 86.105Review
TkA05G042850LXL04_019321JCVI_TKOH_0023197.063.81 / 94.366Review
TkA05G043300LXL04_019328JCVI_TKOH_0023199.6100.0 / 100.0Complex
TkA05G043420LXL04_019332JCVI_TKOH_0023196.2100.0 / 90.548Complex
TkA05G043630LXL04_019334JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G043770LXL04_019335JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G043780LXL04_019336JCVI_TKOH_00231100.0100.0 / 93.145Strict
TkA05G043810LXL04_019337JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G044540LXL04_019339JCVI_TKOH_0023198.9100.0 / 100.0Complex
TkA05G044590LXL04_019340JCVI_TKOH_0023194.382.812 / 24.499Complex
TkA05G044610LXL04_019341JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G044770LXL04_019343JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G044780LXL04_019344JCVI_TKOH_0023199.595.874 / 76.117Probable
TkA05G044820LXL04_019345JCVI_TKOH_0023182.096.484 / 63.425Complex
TkA05G044900LXL04_019346JCVI_TKOH_0023199.1100.0 / 44.177Review
TkA05G045080LXL04_019347JCVI_TKOH_0023168.399.683 / 8.614Complex
TkA05G045120LXL04_019348JCVI_TKOH_0023168.9100.0 / 53.591Complex
TkA05G045370LXL04_019349JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G045440LXL04_019351JCVI_TKOH_00231100.0100.0 / 81.789Complex
TkA05G045450LXL04_019352JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G045460LXL04_019354JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G045720LXL04_019353JCVI_TKOH_0023191.171.818 / 21.18Complex
TkA05G045810LXL04_019355JCVI_TKOH_0023195.9100.0 / 100.0Complex
TkA05G045870LXL04_019355JCVI_TKOH_0023170.698.618 / 95.495Complex
TkA05G046050LXL04_019358JCVI_TKOH_0023196.3100.0 / 90.083Complex
TkA05G046270LXL04_019363JCVI_TKOH_0023197.2100.0 / 100.0Complex
TkA05G046290LXL04_019364JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G046300LXL04_019365JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G046420LXL04_019366JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G047270LXL04_019370JCVI_TKOH_00231100.098.394 / 98.79Complex
TkA05G047830LXL04_019375JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G047880LXL04_019376JCVI_TKOH_0023195.8100.0 / 100.0Complex
TkA05G048040LXL04_019377JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G048190LXL04_019381JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G048330LXL04_019384JCVI_TKOH_0023199.3100.0 / 54.244Review
TkA05G048350LXL04_019385JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G048390LXL04_019386JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G048540LXL04_019387JCVI_TKOH_0023180.190.871 / 31.905Complex
TkA05G048550LXL04_019388JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G048560LXL04_019389JCVI_TKOH_0023185.9100.0 / 100.0Review
TkA05G048570LXL04_019390JCVI_TKOH_0023196.7100.0 / 56.698Review
TkA05G048580LXL04_019391JCVI_TKOH_0023195.1100.0 / 71.646Probable
TkA05G048860LXL04_019393JCVI_TKOH_0023196.9100.0 / 100.0Strict
TkA05G048890LXL04_019394JCVI_TKOH_0023199.5100.0 / 100.0Strict
TkA05G048930LXL04_019396JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G048950LXL04_019397JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G049150LXL04_019398JCVI_TKOH_0023199.579.377 / 95.775Complex
TkA05G049160LXL04_019399JCVI_TKOH_0023199.5100.0 / 100.0Strict
TkA05G049260LXL04_019400JCVI_TKOH_0023198.0100.0 / 100.0Strict
TkA05G049270LXL04_019401JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G049280LXL04_019403JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G049300LXL04_019404JCVI_TKOH_0023199.899.891 / 99.891Complex
TkA05G049400LXL04_019404JCVI_TKOH_0023176.492.241 / 58.542Complex
TkA05G049460LXL04_019405JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G049480LXL04_019406JCVI_TKOH_0023199.494.118 / 90.358Complex
TkA05G049710LXL04_019407JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G049720LXL04_019408JCVI_TKOH_00231100.085.782 / 92.347Strict
TkA05G049780LXL04_019410JCVI_TKOH_00231100.0100.0 / 77.287Probable