Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00338
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 368
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00338

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00338 Chr08 4260402-14096744 Chr04 100236-9598295 mixed High 200 anchors
Chr08 4260402-14096744 Chr04 100236-9598295 JCVI_TKOH_00338 · 368 gene pairs TkA08G017450 | LXL04_018244 | 100.0% | multi_source_to_OH1004 | Complex TkA08G017560 | LXL04_018247 | 99.8% | RBH_high_identity_coverage_synteny | Strict TkA08G017720 | LXL04_018248 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA08G017770 | LXL04_018250 | 100.0% | multi_source_to_OH1004 | Complex TkA08G017780 | LXL04_018251 | 94.0% | multi_source_to_OH1004 | Complex TkA08G017790 | LXL04_018252 | 99.3% | multi_source_to_OH1004 | Complex TkA08G018150 | LXL04_018255 | 95.1% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA08G018170 | LXL04_018254 | 83.9% | multi_source_to_OH1004 | Complex TkA08G018370 | LXL04_018252 | 99.5% | multi_source_to_OH1004 | Complex TkA08G018380 | LXL04_018251 | 94.6% | multi_source_to_OH1004 | Complex TkA08G018420 | LXL04_018250 | 100.0% | multi_source_to_OH1004 | Complex TkA08G018440 | LXL04_018249 | 88.5% | non_reciprocal_best_hit | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00338 Chr08:4260402-14096744 Chr04:100236-9598295 mixed 368 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 368 · Showing 1–200 · Page 1/2

TkA08G017450 → LXL04_018244
100.0%
TkA08G017560 → LXL04_018247
99.8%
TkA08G017720 → LXL04_018248
100.0%
TkA08G017770 → LXL04_018250
100.0%
TkA08G017780 → LXL04_018251
94.0%
TkA08G017790 → LXL04_018252
99.3%
TkA08G018150 → LXL04_018255
95.1%
TkA08G018170 → LXL04_018254
83.9%
TkA08G018370 → LXL04_018252
99.5%
TkA08G018380 → LXL04_018251
94.6%
TkA08G018420 → LXL04_018250
100.0%
TkA08G018440 → LXL04_018249
88.5%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA08G017450LXL04_018244JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G017560LXL04_018247JCVI_TKOH_0033899.8100.0 / 100.0Strict
TkA08G017720LXL04_018248JCVI_TKOH_00338100.0100.0 / 100.0Review
TkA08G017770LXL04_018250JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G017780LXL04_018251JCVI_TKOH_0033894.0100.0 / 75.962Complex
TkA08G017790LXL04_018252JCVI_TKOH_0033899.3100.0 / 100.0Complex
TkA08G018150LXL04_018255JCVI_TKOH_0033895.1100.0 / 100.0Review
TkA08G018170LXL04_018254JCVI_TKOH_0033883.985.897 / 78.571Complex
TkA08G018370LXL04_018252JCVI_TKOH_0033899.5100.0 / 100.0Complex
TkA08G018380LXL04_018251JCVI_TKOH_0033894.6100.0 / 75.962Complex
TkA08G018420LXL04_018250JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G018440LXL04_018249JCVI_TKOH_0033888.5100.0 / 100.0Complex
TkA08G018510LXL04_018248JCVI_TKOH_00338100.0100.0 / 100.0Review
TkA08G018530LXL04_018247JCVI_TKOH_00338100.094.004 / 47.6Review
TkA08G018620LXL04_018244JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G018670LXL04_018243JCVI_TKOH_0033897.5100.0 / 100.0Strict
TkA08G018690LXL04_018242JCVI_TKOH_0033898.5100.0 / 100.0Strict
TkA08G018920LXL04_018239JCVI_TKOH_0033891.3100.0 / 100.0Probable
TkA08G018930LXL04_018238JCVI_TKOH_0033898.3100.0 / 100.0Review
TkA08G019170LXL04_018237JCVI_TKOH_0033891.094.748 / 94.747Complex
TkA08G019220LXL04_018232JCVI_TKOH_0033899.5100.0 / 61.889Complex
TkA08G019230LXL04_018232JCVI_TKOH_00338100.060.976 / 32.573Complex
TkA08G019440LXL04_018228JCVI_TKOH_0033893.7100.0 / 100.0Probable
TkA08G019660LXL04_018209JCVI_TKOH_0033891.725.899 / 16.036Complex
TkA08G019710LXL04_018217JCVI_TKOH_0033893.995.62 / 43.813Complex
TkA08G019790LXL04_018215JCVI_TKOH_0033876.188.497 / 48.542Complex
TkA08G019860LXL04_018214JCVI_TKOH_0033899.8100.0 / 100.0Strict
TkA08G019880LXL04_018213JCVI_TKOH_0033889.8100.0 / 95.169Complex
TkA08G020090LXL04_018210JCVI_TKOH_0033893.897.598 / 71.384Review
TkA08G020130LXL04_018209JCVI_TKOH_0033887.887.368 / 82.183Complex
TkA08G020160LXL04_018208JCVI_TKOH_0033899.398.621 / 18.644Review
TkA08G020230LXL04_018209JCVI_TKOH_0033874.885.666 / 49.889Complex
TkA08G020240LXL04_018209JCVI_TKOH_0033892.725.466 / 9.131Complex
TkA08G020260LXL04_018208JCVI_TKOH_0033899.3100.0 / 96.48Strict
TkA08G020400LXL04_018204JCVI_TKOH_0033899.7100.0 / 100.0Strict
TkA08G020470LXL04_018202JCVI_TKOH_0033897.298.619 / 63.458Complex
TkA08G020510LXL04_018200JCVI_TKOH_0033899.798.328 / 49.164Review
TkA08G020690LXL04_018200JCVI_TKOH_0033899.6100.0 / 47.659Review
TkA08G020700LXL04_018199JCVI_TKOH_0033899.3100.0 / 84.099Strict
TkA08G020710LXL04_018198JCVI_TKOH_0033894.5100.0 / 93.664Complex
TkA08G021000LXL04_018196JCVI_TKOH_0033880.3100.0 / 45.641Complex
TkA08G021010LXL04_018196JCVI_TKOH_0033875.2100.0 / 37.179Complex
TkA08G021060LXL04_018196JCVI_TKOH_0033899.799.49 / 100.0Strict
TkA08G021080LXL04_018195JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G021110LXL04_018193JCVI_TKOH_00338100.0100.0 / 83.824Strict
TkA08G021120LXL04_018192JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G021150LXL04_018191JCVI_TKOH_0033899.9100.0 / 100.0Strict
TkA08G021570LXL04_018189JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G021660LXL04_018187JCVI_TKOH_00338100.0100.0 / 71.503Probable
TkA08G021700LXL04_018186JCVI_TKOH_0033897.9100.0 / 100.0Strict
TkA08G021760LXL04_018184JCVI_TKOH_0033899.3100.0 / 100.0Strict
TkA08G021940LXL04_018181JCVI_TKOH_0033887.999.753 / 99.063Review
TkA08G022110LXL04_018179JCVI_TKOH_0033890.963.462 / 68.75Review
TkA08G022180LXL04_018178JCVI_TKOH_00338100.0100.0 / 71.698Complex
TkA08G022230LXL04_018177JCVI_TKOH_0033898.470.833 / 47.222Review
TkA08G022540LXL04_018169JCVI_TKOH_0033899.7100.0 / 100.0Strict
TkA08G022750LXL04_018168JCVI_TKOH_0033899.1100.0 / 78.676Complex
TkA08G022860LXL04_018166JCVI_TKOH_0033898.877.885 / 75.701Complex
TkA08G022980LXL04_018163JCVI_TKOH_0033898.0100.0 / 100.0Strict
TkA08G023010LXL04_018162JCVI_TKOH_00338100.060.714 / 52.713Complex
TkA08G023130LXL04_018159JCVI_TKOH_0033897.599.04 / 67.145Review
TkA08G023140LXL04_018158JCVI_TKOH_0033897.7100.0 / 100.0Complex
TkA08G023150LXL04_018157JCVI_TKOH_0033898.792.629 / 44.034Review
TkA08G023160LXL04_018157JCVI_TKOH_0033899.398.92 / 43.371Review
TkA08G023180LXL04_018156JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G023310LXL04_018154JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G023520LXL04_018152JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G023530LXL04_018151JCVI_TKOH_0033898.6100.0 / 100.0Strict
TkA08G023550LXL04_018149JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G023860LXL04_018147JCVI_TKOH_00338100.095.213 / 33.21Review
TkA08G023890LXL04_018147JCVI_TKOH_0033897.295.135 / 33.581Review
TkA08G024370LXL04_018142JCVI_TKOH_0033898.1100.0 / 58.088Review
TkA08G025260LXL04_018136JCVI_TKOH_00338100.097.521 / 65.193Review
TkA08G025510LXL04_018134JCVI_TKOH_0033894.8100.0 / 100.0Probable
TkA08G025520LXL04_018128JCVI_TKOH_0033882.351.345 / 22.131Complex
TkA08G025530LXL04_018133JCVI_TKOH_0033895.197.53 / 87.089Strict
TkA08G025720LXL04_018128JCVI_TKOH_0033866.772.881 / 37.432Complex
TkA08G025780LXL04_018133JCVI_TKOH_0033867.496.633 / 26.667Complex
TkA08G025830LXL04_018128JCVI_TKOH_0033889.287.826 / 38.069Review
TkA08G025880LXL04_018126JCVI_TKOH_00338100.0100.0 / 31.368Review
TkA08G025890LXL04_018125JCVI_TKOH_0033898.9100.0 / 100.0Strict
TkA08G025900LXL04_018124JCVI_TKOH_0033899.597.17 / 88.034Strict
TkA08G025910LXL04_018123JCVI_TKOH_00338100.0100.0 / 51.331Review
TkA08G025920LXL04_018122JCVI_TKOH_00338100.098.792 / 50.619Review
TkA08G025980LXL04_018120JCVI_TKOH_00338100.0100.0 / 98.142Strict
TkA08G025990LXL04_018119JCVI_TKOH_0033899.798.391 / 100.0Strict
TkA08G026140LXL04_018116JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G026260LXL04_018113JCVI_TKOH_00338100.098.869 / 96.256Complex
TkA08G026330LXL04_018112JCVI_TKOH_00338100.0100.0 / 100.0Review
TkA08G026340LXL04_018111JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G026370LXL04_018110JCVI_TKOH_0033889.292.279 / 97.656Complex
TkA08G026380LXL04_018109JCVI_TKOH_0033899.494.678 / 75.278Probable
TkA08G026390LXL04_018108JCVI_TKOH_00338100.074.786 / 100.0Probable
TkA08G026480LXL04_018107JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G026730LXL04_018105JCVI_TKOH_0033888.365.236 / 27.0Complex
TkA08G026740LXL04_018104JCVI_TKOH_0033899.4100.0 / 100.0Complex
TkA08G026810LXL04_018100JCVI_TKOH_0033899.2100.0 / 100.0Strict
TkA08G026860LXL04_018098JCVI_TKOH_00338100.075.467 / 55.058Complex
TkA08G026900LXL04_018097JCVI_TKOH_0033894.3100.0 / 100.0Complex
TkA08G026960LXL04_018096JCVI_TKOH_0033899.1100.0 / 100.0Strict
TkA08G026970LXL04_018095JCVI_TKOH_0033898.4100.0 / 100.0Strict
TkA08G026980LXL04_018094JCVI_TKOH_0033899.2100.0 / 100.0Complex
TkA08G027090LXL04_018093JCVI_TKOH_0033897.0100.0 / 95.211Strict
TkA08G027260LXL04_018092JCVI_TKOH_0033899.590.947 / 87.698Strict
TkA08G027480LXL04_018090JCVI_TKOH_00338100.087.413 / 100.0Review
TkA08G027570LXL04_018088JCVI_TKOH_00338100.097.222 / 63.406Review
TkA08G027900LXL04_018086JCVI_TKOH_0033893.5100.0 / 87.727Probable
TkA08G028610LXL04_018081JCVI_TKOH_0033899.4100.0 / 100.0Complex
TkA08G028660LXL04_018080JCVI_TKOH_0033898.8100.0 / 100.0Strict
TkA08G028690LXL04_018079JCVI_TKOH_0033891.195.089 / 100.0Complex
TkA08G028850LXL04_018078JCVI_TKOH_0033896.2100.0 / 100.0Strict
TkA08G029020LXL04_018076JCVI_TKOH_0033899.0100.0 / 97.426Complex
TkA08G029480LXL04_018073JCVI_TKOH_0033895.2100.0 / 100.0Probable
TkA08G029640LXL04_018071JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G029820LXL04_018068JCVI_TKOH_0033895.6100.0 / 100.0Strict
TkA08G029850LXL04_018067JCVI_TKOH_00338100.0100.0 / 60.534Complex
TkA08G029900LXL04_018066JCVI_TKOH_0033896.4100.0 / 100.0Strict
TkA08G029910LXL04_018065JCVI_TKOH_0033892.098.538 / 78.588Probable
TkA08G029920LXL04_018064JCVI_TKOH_0033898.0100.0 / 85.795Strict
TkA08G029980LXL04_018062JCVI_TKOH_0033898.598.768 / 82.68Complex
TkA08G030760LXL04_018061JCVI_TKOH_0033865.350.926 / 68.944Complex
TkA08G030770LXL04_018061JCVI_TKOH_0033851.997.931 / 97.516Complex
TkA08G030790LXL04_018061JCVI_TKOH_0033897.585.106 / 74.534Complex
TkA08G031010LXL04_018057JCVI_TKOH_0033896.1100.0 / 100.0Complex
TkA08G031020LXL04_018056JCVI_TKOH_0033899.0100.0 / 100.0Strict
TkA08G031150LXL04_018052JCVI_TKOH_0033897.697.076 / 95.954Complex
TkA08G031200LXL04_018049JCVI_TKOH_0033893.476.282 / 99.408Probable
TkA08G031330LXL04_018048JCVI_TKOH_0033898.083.193 / 32.143Review
TkA08G031380LXL04_018045JCVI_TKOH_0033858.331.746 / 30.539Complex
TkA08G031490LXL04_018045JCVI_TKOH_0033859.098.561 / 89.82Complex
TkA08G031620LXL04_018045JCVI_TKOH_0033898.089.82 / 89.82Review
TkA08G031660LXL04_018044JCVI_TKOH_0033899.499.721 / 79.733Complex
TkA08G031770LXL04_018042JCVI_TKOH_0033899.6100.0 / 31.092Review
TkA08G031780LXL04_018042JCVI_TKOH_0033896.398.494 / 35.061Review
TkA08G031790LXL04_018042JCVI_TKOH_00338100.099.174 / 13.23Review
TkA08G031930LXL04_018040JCVI_TKOH_0033895.281.579 / 16.6Complex
TkA08G031940LXL04_018039JCVI_TKOH_0033897.394.953 / 52.076Review
TkA08G032260LXL04_018037JCVI_TKOH_0033897.896.894 / 84.324Review
TkA08G032450LXL04_018036JCVI_TKOH_0033898.6100.0 / 100.0Complex
TkA08G032540LXL04_018039JCVI_TKOH_0033857.190.476 / 45.675Complex
TkA08G032620LXL04_018031JCVI_TKOH_0033899.3100.0 / 100.0Strict
TkA08G032710LXL04_018027JCVI_TKOH_0033899.6100.0 / 100.0Strict
TkA08G032770LXL04_018026JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G032780LXL04_018025JCVI_TKOH_0033895.3100.0 / 97.872Strict
TkA08G033070LXL04_018024JCVI_TKOH_0033899.795.017 / 36.62Review
TkA08G033080LXL04_018058JCVI_TKOH_0033856.077.064 / 41.791Complex
TkA08G033120LXL04_018058JCVI_TKOH_0033881.482.692 / 42.786Review
TkA08G033150LXL04_018021JCVI_TKOH_0033886.9100.0 / 100.0Review
TkA08G033200LXL04_018020JCVI_TKOH_0033895.8100.0 / 100.0Strict
TkA08G033230LXL04_018018JCVI_TKOH_0033898.990.099 / 67.91Complex
TkA08G033260LXL04_018017JCVI_TKOH_0033894.599.225 / 62.745Complex
TkA08G033580LXL04_018012JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G033640LXL04_018011JCVI_TKOH_0033898.4100.0 / 100.0Strict
TkA08G033820LXL04_018003JCVI_TKOH_0033891.3100.0 / 71.19Complex
TkA08G033830LXL04_018000JCVI_TKOH_0033898.761.417 / 16.631Complex
TkA08G034520LXL04_017998JCVI_TKOH_00338100.0100.0 / 72.851Complex
TkA08G034540LXL04_017997JCVI_TKOH_0033884.993.529 / 99.687Complex
TkA08G034780LXL04_017991JCVI_TKOH_0033899.8100.0 / 96.197Strict
TkA08G034880LXL04_017990JCVI_TKOH_0033893.5100.0 / 97.066Probable
TkA08G034940LXL04_017988JCVI_TKOH_0033899.099.76 / 95.814Complex
TkA08G034980LXL04_017987JCVI_TKOH_0033880.1100.0 / 100.0Review
TkA08G034990LXL04_017986JCVI_TKOH_00338100.0100.0 / 53.2Review
TkA08G035020LXL04_017984JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G035140LXL04_017983JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G035700LXL04_017979JCVI_TKOH_0033897.9100.0 / 100.0Strict
TkA08G035770LXL04_017976JCVI_TKOH_0033883.399.363 / 18.75Complex
TkA08G035780LXL04_017977JCVI_TKOH_0033886.860.714 / 2.546Complex
TkA08G035850LXL04_017976JCVI_TKOH_0033874.695.148 / 68.63Complex
TkA08G035860LXL04_017975JCVI_TKOH_0033899.5100.0 / 100.0Strict
TkA08G035880LXL04_017974JCVI_TKOH_0033899.2100.0 / 100.0Strict
TkA08G035960LXL04_017973JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G036040LXL04_017967JCVI_TKOH_0033896.2100.0 / 100.0Complex
TkA08G036210LXL04_017966JCVI_TKOH_0033892.660.51 / 8.448Complex
TkA08G036240LXL04_017966JCVI_TKOH_0033889.999.543 / 20.018Complex
TkA08G036250LXL04_017966JCVI_TKOH_0033891.999.403 / 30.579Complex
TkA08G036260LXL04_017967JCVI_TKOH_0033897.299.529 / 99.296Complex
TkA08G036270LXL04_017966JCVI_TKOH_0033899.8100.0 / 100.0Complex
TkA08G036610LXL04_017964JCVI_TKOH_0033899.3100.0 / 100.0Review
TkA08G036690LXL04_017961JCVI_TKOH_00338100.0100.0 / 100.0Complex
TkA08G037330LXL04_017951JCVI_TKOH_0033897.3100.0 / 85.882Strict
TkA08G037390LXL04_017950JCVI_TKOH_0033899.7100.0 / 100.0Strict
TkA08G037520LXL04_017948JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G037560LXL04_017947JCVI_TKOH_0033899.7100.0 / 95.951Strict
TkA08G037570LXL04_017946JCVI_TKOH_00338100.0100.0 / 100.0Strict
TkA08G037580LXL04_017945JCVI_TKOH_0033899.7100.0 / 100.0Complex
TkA08G037640LXL04_017960JCVI_TKOH_0033899.599.911 / 93.489Complex
TkA08G037650LXL04_017959JCVI_TKOH_00338100.048.077 / 12.255Complex
TkA08G037660LXL04_017959JCVI_TKOH_0033899.4100.0 / 25.49Review
TkA08G037670LXL04_017958JCVI_TKOH_00338100.091.423 / 91.232Complex
TkA08G037690LXL04_017957JCVI_TKOH_0033898.4100.0 / 100.0Complex
TkA08G037750LXL04_017955JCVI_TKOH_0033898.9100.0 / 100.0Strict
TkA08G037760LXL04_017954JCVI_TKOH_0033896.8100.0 / 100.0Complex
TkA08G037810LXL04_017960JCVI_TKOH_0033899.599.911 / 93.489Complex
TkA08G037820LXL04_017959JCVI_TKOH_00338100.048.077 / 12.255Complex
TkA08G037830LXL04_017959JCVI_TKOH_0033899.4100.0 / 25.49Review
TkA08G037840LXL04_017958JCVI_TKOH_00338100.091.423 / 91.232Complex
TkA08G037880LXL04_017957JCVI_TKOH_0033898.6100.0 / 100.0Complex
TkA08G038060LXL04_017955JCVI_TKOH_0033883.278.431 / 48.942Complex
TkA08G038080LXL04_017954JCVI_TKOH_0033895.6100.0 / 100.0Complex
TkA08G038230LXL04_017952JCVI_TKOH_00338100.0100.0 / 100.0Strict