Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00189
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 665
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00189

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00189 Chr04 34940-17190201 Chr08 37803145-54014168 mixed High 200 anchors
Chr04 34940-17190201 Chr08 37803145-54014168 JCVI_TKOH_00189 · 665 gene pairs TkA04G000430 | LXL04_037142 | 93.2% | RBH_sequence_supported | Probable TkA04G000670 | LXL04_037139 | 91.1% | RBH_sequence_supported | Probable TkA04G000680 | LXL04_037138 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA04G000690 | LXL04_037137 | 97.3% | multi_source_to_OH1004 | Complex TkA04G000970 | LXL04_037135 | 98.1% | non_reciprocal_best_hit | Complex TkA04G000990 | LXL04_037133 | 100.0% | non_reciprocal_best_hit | Complex TkA04G001010 | LXL04_037132 | 99.3% | multi_source_to_OH1004 | Complex TkA04G001050 | LXL04_037131 | 85.0% | multi_source_to_OH1004 | Complex TkA04G001090 | LXL04_037130 | 93.8% | multi_source_to_OH1004 | Complex TkA04G001280 | LXL04_037129 | 99.5% | non_reciprocal_best_hit | Complex TkA04G001290 | LXL04_037128 | 99.4% | multi_source_to_OH1004 | Complex TkA04G001330 | LXL04_037127 | 97.8% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00189 Chr04:34940-17190201 Chr08:37803145-54014168 mixed 665 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 665 · Showing 1–200 · Page 1/4

TkA04G000430 → LXL04_037142
93.2%
TkA04G000670 → LXL04_037139
91.1%
TkA04G000680 → LXL04_037138
100.0%
TkA04G000690 → LXL04_037137
97.3%
TkA04G000970 → LXL04_037135
98.1%
TkA04G000990 → LXL04_037133
100.0%
TkA04G001010 → LXL04_037132
99.3%
TkA04G001050 → LXL04_037131
85.0%
TkA04G001090 → LXL04_037130
93.8%
TkA04G001280 → LXL04_037129
99.5%
TkA04G001290 → LXL04_037128
99.4%
TkA04G001330 → LXL04_037127
97.8%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA04G000430LXL04_037142JCVI_TKOH_0018993.299.866 / 87.982Probable
TkA04G000670LXL04_037139JCVI_TKOH_0018991.1100.0 / 100.0Probable
TkA04G000680LXL04_037138JCVI_TKOH_00189100.0100.0 / 58.049Review
TkA04G000690LXL04_037137JCVI_TKOH_0018997.395.643 / 95.228Complex
TkA04G000970LXL04_037135JCVI_TKOH_0018998.167.949 / 24.537Complex
TkA04G000990LXL04_037133JCVI_TKOH_00189100.081.126 / 47.852Complex
TkA04G001010LXL04_037132JCVI_TKOH_0018999.3100.0 / 100.0Complex
TkA04G001050LXL04_037131JCVI_TKOH_0018985.0100.0 / 93.802Complex
TkA04G001090LXL04_037130JCVI_TKOH_0018993.8100.0 / 100.0Complex
TkA04G001280LXL04_037129JCVI_TKOH_0018999.5100.0 / 100.0Complex
TkA04G001290LXL04_037128JCVI_TKOH_0018999.4100.0 / 100.0Complex
TkA04G001330LXL04_037127JCVI_TKOH_0018997.860.135 / 72.951Complex
TkA04G001340LXL04_037126JCVI_TKOH_00189100.0100.0 / 82.955Complex
TkA04G001570LXL04_037123JCVI_TKOH_0018991.1100.0 / 100.0Probable
TkA04G001640LXL04_037120JCVI_TKOH_0018998.093.365 / 57.602Review
TkA04G001650LXL04_037119JCVI_TKOH_00189100.099.01 / 54.645Review
TkA04G001690LXL04_037117JCVI_TKOH_0018999.1100.0 / 32.267Review
TkA04G001700LXL04_037117JCVI_TKOH_0018999.097.143 / 29.651Review
TkA04G001740LXL04_037116JCVI_TKOH_0018999.2100.0 / 72.222Probable
TkA04G001790LXL04_037115JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G002420LXL04_037113JCVI_TKOH_00189100.0100.0 / 82.682Strict
TkA04G002510LXL04_037110JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G002630LXL04_037108JCVI_TKOH_0018996.9100.0 / 100.0Strict
TkA04G002640LXL04_037107JCVI_TKOH_0018993.096.143 / 65.548Complex
TkA04G002930LXL04_037104JCVI_TKOH_0018999.8100.0 / 100.0Complex
TkA04G002940LXL04_037103JCVI_TKOH_00189100.0100.0 / 99.114Strict
TkA04G003240LXL04_037102JCVI_TKOH_0018998.2100.0 / 85.075Strict
TkA04G003500LXL04_037099JCVI_TKOH_0018999.399.813 / 99.813Strict
TkA04G004040LXL04_037093JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G004050LXL04_037092JCVI_TKOH_00189100.0100.0 / 95.514Strict
TkA04G004900LXL04_037090JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G004920LXL04_037089JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G004950LXL04_037088JCVI_TKOH_0018999.1100.0 / 100.0Strict
TkA04G004970LXL04_037087JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G005010LXL04_037085JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G005120LXL04_037083JCVI_TKOH_0018999.6100.0 / 95.439Strict
TkA04G005130LXL04_037082JCVI_TKOH_00189100.0100.0 / 89.212Complex
TkA04G005200LXL04_037081JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G005720LXL04_037077JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G005750LXL04_037075JCVI_TKOH_0018958.530.808 / 67.368Review
TkA04G006340LXL04_037070JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G006370LXL04_037068JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G006430LXL04_037067JCVI_TKOH_00189100.096.33 / 100.0Complex
TkA04G006550LXL04_037077JCVI_TKOH_0018999.6100.0 / 100.0Complex
TkA04G006590LXL04_037075JCVI_TKOH_0018958.530.808 / 67.368Complex
TkA04G007030LXL04_037070JCVI_TKOH_0018991.194.286 / 66.98Complex
TkA04G007050LXL04_037068JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G007100LXL04_037067JCVI_TKOH_00189100.096.33 / 100.0Complex
TkA04G007190LXL04_037065JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G007200LXL04_037064JCVI_TKOH_00189100.098.577 / 97.535Strict
TkA04G007210LXL04_037063JCVI_TKOH_0018999.898.077 / 49.611Review
TkA04G007250LXL04_037061JCVI_TKOH_0018999.396.667 / 58.468Review
TkA04G007290LXL04_037060JCVI_TKOH_00189100.058.73 / 29.96Complex
TkA04G007300LXL04_037059JCVI_TKOH_0018971.584.792 / 29.809Complex
TkA04G007310LXL04_037059JCVI_TKOH_0018988.693.728 / 21.806Complex
TkA04G007460LXL04_037056JCVI_TKOH_0018996.5100.0 / 100.0Complex
TkA04G007480LXL04_037055JCVI_TKOH_00189100.083.186 / 78.661Probable
TkA04G007510LXL04_037054JCVI_TKOH_0018999.595.145 / 55.013Review
TkA04G007670LXL04_037053JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G007690LXL04_037052JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G007710LXL04_037050JCVI_TKOH_0018965.3100.0 / 91.198Review
TkA04G008080LXL04_037049JCVI_TKOH_00189100.099.089 / 95.965Strict
TkA04G008230LXL04_037045JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G008710LXL04_037044JCVI_TKOH_0018999.096.99 / 92.628Complex
TkA04G008740LXL04_037043JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G008750LXL04_037042JCVI_TKOH_0018980.986.268 / 99.625Review
TkA04G008840LXL04_037041JCVI_TKOH_0018991.587.701 / 77.885Probable
TkA04G008860LXL04_037040JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G009310LXL04_037038JCVI_TKOH_00189100.0100.0 / 93.023Review
TkA04G009420LXL04_037034JCVI_TKOH_0018994.576.168 / 28.299Complex
TkA04G009460LXL04_037033JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G010030LXL04_037030JCVI_TKOH_0018999.683.895 / 60.541Complex
TkA04G010060LXL04_037026JCVI_TKOH_0018996.057.714 / 99.02Review
TkA04G010140LXL04_037029JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G010160LXL04_037026JCVI_TKOH_00189100.057.714 / 99.02Review
TkA04G010210LXL04_037025JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G010220LXL04_037024JCVI_TKOH_0018997.299.206 / 95.817Strict
TkA04G010250LXL04_037023JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G010380LXL04_037021JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G010440LXL04_037019JCVI_TKOH_0018993.4100.0 / 94.987Probable
TkA04G010450LXL04_037018JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G010460LXL04_037017JCVI_TKOH_00189100.074.211 / 100.0Complex
TkA04G010640LXL04_037015JCVI_TKOH_00189100.072.973 / 38.942Complex
TkA04G010910LXL04_037014JCVI_TKOH_00189100.0100.0 / 61.759Review
TkA04G010950LXL04_037013JCVI_TKOH_0018998.995.623 / 33.333Review
TkA04G010990LXL04_037011JCVI_TKOH_0018989.5100.0 / 100.0Review
TkA04G011010LXL04_037010JCVI_TKOH_0018964.496.755 / 28.728Review
TkA04G011030LXL04_037010JCVI_TKOH_0018999.493.229 / 7.273Review
TkA04G011050LXL04_037009JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G011060LXL04_037008JCVI_TKOH_00189100.0100.0 / 63.851Review
TkA04G011070LXL04_037008JCVI_TKOH_0018999.199.077 / 36.261Review
TkA04G011230LXL04_037006JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G011240LXL04_037004JCVI_TKOH_00189100.097.688 / 100.0Strict
TkA04G011250LXL04_037003JCVI_TKOH_00189100.0100.0 / 69.679Review
TkA04G011280LXL04_037002JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G011300LXL04_037001JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G011320LXL04_037000JCVI_TKOH_0018999.2100.0 / 100.0Strict
TkA04G011370LXL04_036998JCVI_TKOH_00189100.0100.0 / 88.542Strict
TkA04G011380LXL04_036996JCVI_TKOH_0018999.0100.0 / 100.0Strict
TkA04G011390LXL04_036997JCVI_TKOH_0018988.6100.0 / 100.0Review
TkA04G011610LXL04_036995JCVI_TKOH_0018966.154.054 / 45.255Review
TkA04G011620LXL04_036994JCVI_TKOH_0018999.595.631 / 100.0Complex
TkA04G011710LXL04_036993JCVI_TKOH_0018999.898.124 / 100.0Strict
TkA04G011930LXL04_036992JCVI_TKOH_00189100.0100.0 / 87.651Complex
TkA04G012130LXL04_036991JCVI_TKOH_0018999.6100.0 / 100.0Strict
TkA04G012140LXL04_036990JCVI_TKOH_0018991.8100.0 / 100.0Probable
TkA04G012170LXL04_036989JCVI_TKOH_00189100.087.719 / 87.719Review
TkA04G012200LXL04_036986JCVI_TKOH_0018994.0100.0 / 99.182Complex
TkA04G012230LXL04_036985JCVI_TKOH_0018999.1100.0 / 100.0Strict
TkA04G012240LXL04_036984JCVI_TKOH_0018997.9100.0 / 100.0Strict
TkA04G012250LXL04_036983JCVI_TKOH_0018997.890.523 / 100.0Strict
TkA04G012260LXL04_036982JCVI_TKOH_0018999.398.252 / 97.739Strict
TkA04G012270LXL04_036981JCVI_TKOH_0018999.4100.0 / 100.0Strict
TkA04G012280LXL04_036980JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G012310LXL04_036979JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G012380LXL04_036978JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G012390LXL04_036977JCVI_TKOH_0018996.3100.0 / 98.692Strict
TkA04G012430LXL04_036976JCVI_TKOH_0018994.7100.0 / 100.0Probable
TkA04G012460LXL04_036975JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G013090LXL04_036974JCVI_TKOH_0018999.5100.0 / 100.0Strict
TkA04G013100LXL04_036973JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G013190LXL04_036972JCVI_TKOH_0018997.099.01 / 99.01Complex
TkA04G013210LXL04_036970JCVI_TKOH_0018995.5100.0 / 100.0Strict
TkA04G013240LXL04_036969JCVI_TKOH_0018999.399.178 / 75.093Probable
TkA04G013370LXL04_036968JCVI_TKOH_0018996.659.459 / 60.69Review
TkA04G013490LXL04_036966JCVI_TKOH_0018981.5100.0 / 100.0Review
TkA04G013500LXL04_036965JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G013530LXL04_036964JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G013760LXL04_036959JCVI_TKOH_0018999.493.452 / 96.914Strict
TkA04G013770LXL04_036956JCVI_TKOH_0018988.5100.0 / 100.0Complex
TkA04G013780LXL04_036958JCVI_TKOH_0018999.498.054 / 91.155Strict
TkA04G013830LXL04_036956JCVI_TKOH_0018999.3100.0 / 100.0Complex
TkA04G013860LXL04_036955JCVI_TKOH_0018999.4100.0 / 100.0Complex
TkA04G013990LXL04_036954JCVI_TKOH_0018997.997.626 / 56.724Review
TkA04G014000LXL04_036953JCVI_TKOH_0018996.9100.0 / 100.0Complex
TkA04G014060LXL04_036955JCVI_TKOH_0018999.7100.0 / 100.0Complex
TkA04G014190LXL04_036954JCVI_TKOH_0018999.3100.0 / 78.103Complex
TkA04G014200LXL04_036953JCVI_TKOH_0018999.098.237 / 67.126Complex
TkA04G014320LXL04_036951JCVI_TKOH_00189100.077.707 / 96.063Probable
TkA04G014330LXL04_036950JCVI_TKOH_0018986.890.066 / 70.833Review
TkA04G014340LXL04_036949JCVI_TKOH_0018994.772.308 / 28.485Complex
TkA04G014420LXL04_036948JCVI_TKOH_0018949.681.481 / 10.774Complex
TkA04G014490LXL04_036948JCVI_TKOH_0018973.985.328 / 11.263Complex
TkA04G014510LXL04_036949JCVI_TKOH_00189100.095.58 / 52.424Review
TkA04G014540LXL04_036948JCVI_TKOH_0018976.1100.0 / 15.965Complex
TkA04G014550LXL04_036948JCVI_TKOH_0018986.094.993 / 28.844Review
TkA04G014830LXL04_036945JCVI_TKOH_0018981.0100.0 / 100.0Complex
TkA04G014840LXL04_036944JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G014850LXL04_036943JCVI_TKOH_0018998.5100.0 / 100.0Strict
TkA04G015840LXL04_036941JCVI_TKOH_00189100.078.571 / 39.146Complex
TkA04G015910LXL04_036939JCVI_TKOH_0018998.8100.0 / 98.811Strict
TkA04G016310LXL04_036938JCVI_TKOH_00189100.036.913 / 36.913Review
TkA04G016480LXL04_036936JCVI_TKOH_0018996.787.814 / 99.916Strict
TkA04G016490LXL04_036937JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G016510LXL04_036934JCVI_TKOH_0018999.098.664 / 57.046Review
TkA04G016750LXL04_036931JCVI_TKOH_0018996.7100.0 / 100.0Strict
TkA04G016780LXL04_036930JCVI_TKOH_0018999.392.517 / 100.0Complex
TkA04G016820LXL04_036930JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G017110LXL04_036927JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G017120LXL04_036926JCVI_TKOH_0018986.2100.0 / 100.0Review
TkA04G017160LXL04_036926JCVI_TKOH_00189100.093.258 / 45.688Review
TkA04G017450LXL04_036923JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G017490LXL04_036922JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G017570LXL04_036920JCVI_TKOH_0018999.2100.0 / 65.374Review
TkA04G017590LXL04_036919JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G017650LXL04_036918JCVI_TKOH_0018999.893.409 / 71.107Probable
TkA04G017670LXL04_036917JCVI_TKOH_0018999.8100.0 / 100.0Complex
TkA04G017690LXL04_036915JCVI_TKOH_0018999.496.915 / 92.708Strict
TkA04G017720LXL04_036914JCVI_TKOH_0018997.771.901 / 69.6Review
TkA04G017730LXL04_036913JCVI_TKOH_0018997.485.065 / 68.274Complex
TkA04G017740LXL04_036912JCVI_TKOH_00189100.099.259 / 48.727Review
TkA04G017750LXL04_036911JCVI_TKOH_0018997.2100.0 / 36.709Review
TkA04G017820LXL04_036910JCVI_TKOH_0018995.4100.0 / 100.0Strict
TkA04G017840LXL04_036909JCVI_TKOH_0018994.697.115 / 80.762Probable
TkA04G017870LXL04_036908JCVI_TKOH_0018995.583.562 / 33.197Review
TkA04G017890LXL04_036907JCVI_TKOH_0018999.364.019 / 28.542Complex
TkA04G017930LXL04_036905JCVI_TKOH_0018999.798.366 / 80.106Strict
TkA04G017960LXL04_036904JCVI_TKOH_00189100.0100.0 / 97.076Strict
TkA04G017970LXL04_036903JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G017990LXL04_036902JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G018000LXL04_036901JCVI_TKOH_0018999.499.941 / 99.883Strict
TkA04G018040LXL04_036900JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G018050LXL04_036899JCVI_TKOH_0018996.9100.0 / 100.0Strict
TkA04G018060LXL04_036897JCVI_TKOH_0018986.294.0 / 22.933Review
TkA04G018080LXL04_036898JCVI_TKOH_0018968.673.381 / 52.866Review
TkA04G018100LXL04_036896JCVI_TKOH_0018999.499.109 / 99.503Complex
TkA04G018140LXL04_036892JCVI_TKOH_0018994.0100.0 / 100.0Complex
TkA04G018730LXL04_036889JCVI_TKOH_00189100.080.592 / 68.056Complex
TkA04G018780LXL04_036887JCVI_TKOH_0018999.556.319 / 31.685Review
TkA04G018850LXL04_036882JCVI_TKOH_0018943.1100.0 / 69.883Complex
TkA04G018860LXL04_036883JCVI_TKOH_00189100.0100.0 / 99.412Complex
TkA04G018870LXL04_036882JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G018880LXL04_036881JCVI_TKOH_0018999.5100.0 / 100.0Strict
TkA04G018980LXL04_036879JCVI_TKOH_0018999.089.7 / 23.771Review
TkA04G018990LXL04_036879JCVI_TKOH_0018993.696.45 / 37.714Review
TkA04G019000LXL04_036879JCVI_TKOH_00189100.0100.0 / 28.914Review
TkA04G019030LXL04_036878JCVI_TKOH_00189100.099.057 / 63.636Review
TkA04G019250LXL04_036875JCVI_TKOH_0018992.2100.0 / 100.0Complex
TkA04G019260LXL04_036874JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G019630LXL04_036872JCVI_TKOH_00189100.0100.0 / 100.0Strict