LXL04_037104 | RubberDandelionOmics

Gene overview

LXL04_037104

Reference: OH-1004 Chr: Chr08 Coordinates: 53264557-53267112 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2556 bp · LXL04_037104|LXL04_037104|OH1004|cDNA

ATGAACCCTGGTTTGATTCCCCTGATTGTATATCTCTCTCTTCTTTTCAATACCCTCAGCGAGGCTCAGCCGTCCTCCGCCGGCCCGCGTCCATTAGCCTTAAACTGCGGCTCAAAAGACGGTGGCCATGATGCCGACAATCGAAAATGGGAATCAGATGATAAATACCTGGTGGCCGCCGACAAATCGGTTTCATCAACCGCCTTAACCCATGAGGCGTCGCTTTGCTCCGACGTACCGTACATGACCGCCAGGATATT...

CDS

Download CDS FASTA

2556 bp · LXL04_037104|LXL04_037104|OH1004|CDS

ATGAACCCTGGTTTGATTCCCCTGATTGTATATCTCTCTCTTCTTTTCAATACCCTCAGCGAGGCTCAGCCGTCCTCCGCCGGCCCGCGTCCATTAGCCTTAAACTGCGGCTCAAAAGACGGTGGCCATGATGCCGACAATCGAAAATGGGAATCAGATGATAAATACCTGGTGGCCGCCGACAAATCGGTTTCATCAACCGCCTTAACCCATGAGGCGTCGCTTTGCTCCGACGTACCGTACATGACCGCCAGGATATT...

Protein

Download Protein FASTA

851 aa · LXL04_037104|LXL04_037104|OH1004|PROTEIN

MNPGLIPLIVYLSLLFNTLSEAQPSSAGPRPLALNCGSKDGGHDADNRKWESDDKYLVAADKSVSSTALTHEASLCSDVPYMTARIFKGETSYKFNVNSTSRYIIRLHFYPSNYPDYNISDSYSVVTTGTMTLLRNFSAFITAEALSQAYLIREYSLAAFNSDSITLTFKPADKSFAFVNGIELITEPELFDDKAGLVGVADTAGTIDGVSSNMQTMFRLNVGGQYIHPKNDSGGLMRSWYDDMPYMFGAGTISHVGNVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037104`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037104

Location Chr08:53264557-53267112 (+)

Description Similar to ANX2: Receptor-like protein kinase ANXUR2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g54380`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018 Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037104 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT3G04690

ath:AT3G51550

ath:AT5G28680

ath:AT5G39000

ath:AT5G54380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.822

Rank 1 · LXL04_037104 · OH-1004

Endoplasmic reticulum0.089

Rank 2 · LXL04_037104 · OH-1004

Cytoplasm0.084

Rank 3 · LXL04_037104 · OH-1004

Lysosome / Vacuole0.046

Rank 4 · LXL04_037104 · OH-1004

Nucleus0.046

Rank 5 · LXL04_037104 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12819.14Malectin_like34-394 aa

PF11721.15Malectin269-362 aa

PF00069.32Pkinase517-782 aa

PF07714.24PK_Tyr_Ser-Thr519-728 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037104	`PF12819.14`	Malectin_like	34	394	1e-27	98.0
LXL04_037104	`PF11721.15`	Malectin	269	362	4.1e-14	53.7
LXL04_037104	`PF00069.32`	Pkinase	517	782	4.9e-44	151.4
LXL04_037104	`PF07714.24`	PK_Tyr_Ser-Thr	519	728	3.1e-46	158.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	54.691%	Swiss-Prot	strong database homology
`Q9SR05`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR1	55.018%	Swiss-Prot	strong database homology
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	49.542%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	43.260%	Swiss-Prot	moderate database homology
`Q9LK35`	Arabidopsis thaliana	Receptor-like protein kinase THESEUS 1	43.516%	Swiss-Prot	moderate database homology

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