Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00145
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 193
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00145

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00145 Chr03 96861414-104107744 Chr02 115494989-122815271 mixed High 193 anchors
Chr03 96861414-104107744 Chr02 115494989-122815271 JCVI_TKOH_00145 · 193 gene pairs TkA03G390780 | LXL04_008995 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA03G390790 | LXL04_008996 | 85.4% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G391740 | LXL04_009003 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA03G392240 | LXL04_009005 | 99.9% | RBH_high_identity_coverage_synteny | Strict TkA03G392260 | LXL04_009007 | 97.0% | sequence_supported_annotation_or_model_conflict | Review TkA03G392470 | LXL04_009008 | 83.7% | non_reciprocal_best_hit | Complex TkA03G392480 | LXL04_009008 | 99.1% | sequence_supported_annotation_or_model_conflict | Review TkA03G392580 | LXL04_009009 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA03G392710 | LXL04_009010 | 99.2% | RBH_high_identity_coverage_synteny | Strict TkA03G392820 | LXL04_009012 | 98.1% | RBH_sequence_supported | Probable TkA03G393160 | LXL04_009016 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA03G393270 | LXL04_009018 | 95.4% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00145 Chr03:96861414-104107744 Chr02:115494989-122815271 mixed 193 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 193 · Showing 1–193 · Page 1/1

TkA03G390780 → LXL04_008995
99.4%
TkA03G390790 → LXL04_008996
85.4%
TkA03G391740 → LXL04_009003
100.0%
TkA03G392240 → LXL04_009005
99.9%
TkA03G392260 → LXL04_009007
97.0%
TkA03G392470 → LXL04_009008
83.7%
TkA03G392480 → LXL04_009008
99.1%
TkA03G392580 → LXL04_009009
99.4%
TkA03G392710 → LXL04_009010
99.2%
TkA03G392820 → LXL04_009012
98.1%
TkA03G393160 → LXL04_009016
100.0%
TkA03G393270 → LXL04_009018
95.4%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA03G390780LXL04_008995JCVI_TKOH_0014599.4100.0 / 100.0Strict
TkA03G390790LXL04_008996JCVI_TKOH_0014585.4100.0 / 100.0Review
TkA03G391740LXL04_009003JCVI_TKOH_00145100.092.913 / 92.188Strict
TkA03G392240LXL04_009005JCVI_TKOH_0014599.9100.0 / 100.0Strict
TkA03G392260LXL04_009007JCVI_TKOH_0014597.0100.0 / 52.332Review
TkA03G392470LXL04_009008JCVI_TKOH_0014583.7100.0 / 16.785Complex
TkA03G392480LXL04_009008JCVI_TKOH_0014599.198.964 / 57.937Review
TkA03G392580LXL04_009009JCVI_TKOH_0014599.4100.0 / 100.0Strict
TkA03G392710LXL04_009010JCVI_TKOH_0014599.2100.0 / 100.0Strict
TkA03G392820LXL04_009012JCVI_TKOH_0014598.181.203 / 78.832Probable
TkA03G393160LXL04_009016JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G393270LXL04_009018JCVI_TKOH_0014595.4100.0 / 100.0Complex
TkA03G393340LXL04_009018JCVI_TKOH_0014595.4100.0 / 100.0Complex
TkA03G393440LXL04_009021JCVI_TKOH_0014598.7100.0 / 100.0Strict
TkA03G393450LXL04_009023JCVI_TKOH_0014597.1100.0 / 100.0Strict
TkA03G393610LXL04_009024JCVI_TKOH_0014598.496.825 / 63.947Complex
TkA03G393710LXL04_009025JCVI_TKOH_0014563.661.062 / 22.319Complex
TkA03G393840LXL04_009026JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G393890LXL04_009028JCVI_TKOH_0014573.895.156 / 62.081Complex
TkA03G393950LXL04_009030JCVI_TKOH_0014594.8100.0 / 94.913Probable
TkA03G394100LXL04_009035JCVI_TKOH_0014593.9100.0 / 100.0Complex
TkA03G394260LXL04_009038JCVI_TKOH_0014591.9100.0 / 100.0Probable
TkA03G394270LXL04_009039JCVI_TKOH_0014597.9100.0 / 98.967Strict
TkA03G394470LXL04_009041JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G394490LXL04_009042JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G394650LXL04_009047JCVI_TKOH_0014588.196.781 / 31.075Complex
TkA03G395080LXL04_009047JCVI_TKOH_0014599.799.389 / 44.559Review
TkA03G395090LXL04_009048JCVI_TKOH_0014599.9100.0 / 100.0Strict
TkA03G395130LXL04_009049JCVI_TKOH_00145100.0100.0 / 92.821Strict
TkA03G395140LXL04_009050JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G395150LXL04_009051JCVI_TKOH_0014597.591.603 / 63.102Review
TkA03G395170LXL04_009052JCVI_TKOH_0014584.297.561 / 48.583Complex
TkA03G395290LXL04_009054JCVI_TKOH_00145100.095.172 / 87.898Review
TkA03G395450LXL04_009058JCVI_TKOH_0014599.1100.0 / 54.95Review
TkA03G395460LXL04_009060JCVI_TKOH_0014584.395.025 / 83.772Review
TkA03G395740LXL04_009063JCVI_TKOH_0014599.5100.0 / 74.677Complex
TkA03G395860LXL04_009069JCVI_TKOH_0014599.2100.0 / 100.0Strict
TkA03G395880LXL04_009071JCVI_TKOH_0014599.8100.0 / 100.0Complex
TkA03G396430LXL04_009075JCVI_TKOH_0014599.0100.0 / 100.0Strict
TkA03G396480LXL04_009077JCVI_TKOH_0014599.6100.0 / 100.0Complex
TkA03G396590LXL04_009079JCVI_TKOH_0014593.8100.0 / 99.147Probable
TkA03G396650LXL04_009080JCVI_TKOH_00145100.097.561 / 39.474Review
TkA03G396690LXL04_009081JCVI_TKOH_0014598.966.418 / 26.767Complex
TkA03G396930LXL04_009082JCVI_TKOH_0014599.8100.0 / 100.0Complex
TkA03G397410LXL04_009087JCVI_TKOH_0014599.7100.0 / 100.0Complex
TkA03G397960LXL04_009080JCVI_TKOH_0014578.999.487 / 95.066Complex
TkA03G398050LXL04_009080JCVI_TKOH_0014579.299.487 / 95.066Complex
TkA03G398410LXL04_009100JCVI_TKOH_0014598.8100.0 / 100.0Strict
TkA03G398480LXL04_009101JCVI_TKOH_0014591.3100.0 / 83.221Probable
TkA03G398490LXL04_009102JCVI_TKOH_0014592.4100.0 / 100.0Probable
TkA03G398780LXL04_009109JCVI_TKOH_0014588.8100.0 / 100.0Review
TkA03G398840LXL04_009113JCVI_TKOH_0014599.8100.0 / 100.0Strict
TkA03G398870LXL04_009114JCVI_TKOH_00145100.0100.0 / 100.0Review
TkA03G398880LXL04_009115JCVI_TKOH_0014599.9100.0 / 100.0Strict
TkA03G399090LXL04_009116JCVI_TKOH_0014591.8100.0 / 100.0Probable
TkA03G399110LXL04_009117JCVI_TKOH_0014599.554.663 / 38.539Review
TkA03G399310LXL04_009119JCVI_TKOH_0014589.252.083 / 100.0Review
TkA03G399380LXL04_009120JCVI_TKOH_00145100.0100.0 / 23.805Review
TkA03G399390LXL04_009120JCVI_TKOH_0014598.289.641 / 21.511Review
TkA03G399400LXL04_009120JCVI_TKOH_00145100.050.915 / 15.966Complex
TkA03G399740LXL04_009121JCVI_TKOH_00145100.0100.0 / 81.493Complex
TkA03G399760LXL04_009122JCVI_TKOH_00145100.0100.0 / 41.818Review
TkA03G399770LXL04_009122JCVI_TKOH_0014598.896.498 / 45.273Review
TkA03G400340LXL04_009121JCVI_TKOH_0014599.4100.0 / 92.537Complex
TkA03G400370LXL04_009122JCVI_TKOH_00145100.0100.0 / 41.818Review
TkA03G400570LXL04_009124JCVI_TKOH_0014599.390.578 / 79.045Probable
TkA03G400590LXL04_009127JCVI_TKOH_0014556.733.04 / 35.125Complex
TkA03G400610LXL04_009127JCVI_TKOH_0014593.7100.0 / 98.981Probable
TkA03G400710LXL04_009129JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G400730LXL04_009130JCVI_TKOH_0014599.4100.0 / 100.0Strict
TkA03G400860LXL04_009131JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G400910LXL04_009135JCVI_TKOH_0014599.0100.0 / 100.0Complex
TkA03G400920LXL04_009136JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G400930LXL04_009138JCVI_TKOH_0014599.5100.0 / 100.0Strict
TkA03G400940LXL04_009139JCVI_TKOH_0014599.5100.0 / 100.0Complex
TkA03G400990LXL04_009140JCVI_TKOH_0014582.292.481 / 97.297Review
TkA03G401010LXL04_009141JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G401070LXL04_009143JCVI_TKOH_00145100.0100.0 / 99.029Strict
TkA03G401100LXL04_009145JCVI_TKOH_00145100.0100.0 / 100.0Review
TkA03G401130LXL04_009146JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G401150LXL04_009147JCVI_TKOH_00145100.0100.0 / 74.783Complex
TkA03G401180LXL04_009148JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G401250LXL04_009148JCVI_TKOH_0014581.388.571 / 74.372Complex
TkA03G401460LXL04_009152JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G402050LXL04_009154JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G402350LXL04_009157JCVI_TKOH_0014595.2100.0 / 100.0Strict
TkA03G402900LXL04_009160JCVI_TKOH_0014599.3100.0 / 100.0Strict
TkA03G403700LXL04_009161JCVI_TKOH_0014599.273.252 / 100.0Complex
TkA03G404430LXL04_009162JCVI_TKOH_0014596.9100.0 / 58.525Review
TkA03G404580LXL04_009163JCVI_TKOH_0014599.5100.0 / 98.919Strict
TkA03G404780LXL04_009165JCVI_TKOH_0014599.799.01 / 81.967Complex
TkA03G404790LXL04_009166JCVI_TKOH_0014597.6100.0 / 100.0Complex
TkA03G404900LXL04_009168JCVI_TKOH_00145100.0100.0 / 100.0Review
TkA03G405130LXL04_009169JCVI_TKOH_0014599.497.5 / 80.412Strict
TkA03G405140LXL04_009170JCVI_TKOH_0014598.5100.0 / 100.0Strict
TkA03G405150LXL04_009171JCVI_TKOH_0014599.8100.0 / 100.0Review
TkA03G405160LXL04_009172JCVI_TKOH_0014598.5100.0 / 79.478Complex
TkA03G405200LXL04_009174JCVI_TKOH_0014594.1100.0 / 100.0Probable
TkA03G405530LXL04_009176JCVI_TKOH_0014599.699.82 / 71.883Probable
TkA03G405550LXL04_009177JCVI_TKOH_0014599.385.0 / 97.143Strict
TkA03G405620LXL04_009179JCVI_TKOH_00145100.0100.0 / 100.0Review
TkA03G405800LXL04_009180JCVI_TKOH_0014590.9100.0 / 100.0Probable
TkA03G405850LXL04_009182JCVI_TKOH_0014597.1100.0 / 100.0Strict
TkA03G406690LXL04_009185JCVI_TKOH_0014599.7100.0 / 100.0Complex
TkA03G406740LXL04_009186JCVI_TKOH_0014599.1100.0 / 100.0Review
TkA03G406760LXL04_009187JCVI_TKOH_0014596.993.333 / 53.002Review
TkA03G406770LXL04_009188JCVI_TKOH_0014598.6100.0 / 100.0Review
TkA03G406780LXL04_009189JCVI_TKOH_0014599.6100.0 / 100.0Complex
TkA03G407080LXL04_009184JCVI_TKOH_00145100.096.0 / 76.19Complex
TkA03G407100LXL04_009185JCVI_TKOH_00145100.059.18 / 52.696Complex
TkA03G407130LXL04_009186JCVI_TKOH_0014597.396.491 / 95.726Review
TkA03G407140LXL04_009187JCVI_TKOH_0014595.293.22 / 53.002Review
TkA03G407200LXL04_009188JCVI_TKOH_0014591.7100.0 / 88.018Complex
TkA03G407210LXL04_009189JCVI_TKOH_0014599.5100.0 / 100.0Complex
TkA03G407390LXL04_009192JCVI_TKOH_0014582.0100.0 / 55.932Complex
TkA03G407540LXL04_009193JCVI_TKOH_0014597.8100.0 / 93.194Strict
TkA03G407810LXL04_009197JCVI_TKOH_0014579.591.739 / 45.993Review
TkA03G408140LXL04_009200JCVI_TKOH_00145100.097.607 / 86.778Strict
TkA03G408350LXL04_009201JCVI_TKOH_0014577.2100.0 / 100.0Review
TkA03G408710LXL04_009203JCVI_TKOH_0014599.891.499 / 90.487Strict
TkA03G408870LXL04_009204JCVI_TKOH_0014599.3100.0 / 100.0Strict
TkA03G409120LXL04_009205JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G409140LXL04_009206JCVI_TKOH_0014599.6100.0 / 100.0Complex
TkA03G409190LXL04_009207JCVI_TKOH_0014595.6100.0 / 70.253Complex
TkA03G409270LXL04_009210JCVI_TKOH_0014599.6100.0 / 100.0Review
TkA03G409440LXL04_009211JCVI_TKOH_0014599.6100.0 / 100.0Strict
TkA03G409590LXL04_009212JCVI_TKOH_0014597.981.897 / 60.127Complex
TkA03G409600LXL04_009213JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G409610LXL04_009214JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G409900LXL04_009215JCVI_TKOH_0014598.584.516 / 95.62Strict
TkA03G409980LXL04_009216JCVI_TKOH_0014596.6100.0 / 94.344Review
TkA03G409990LXL04_009217JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G410380LXL04_009219JCVI_TKOH_0014596.4100.0 / 83.068Review
TkA03G410800LXL04_009223JCVI_TKOH_0014599.2100.0 / 100.0Strict
TkA03G411210LXL04_009225JCVI_TKOH_0014599.7100.0 / 100.0Strict
TkA03G411380LXL04_009226JCVI_TKOH_0014599.898.816 / 41.894Review
TkA03G411400LXL04_009227JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G411860LXL04_009230JCVI_TKOH_0014597.0100.0 / 89.183Review
TkA03G412060LXL04_009233JCVI_TKOH_0014599.469.869 / 14.047Complex
TkA03G412070LXL04_009233JCVI_TKOH_0014588.4100.0 / 18.964Complex
TkA03G412080LXL04_009234JCVI_TKOH_0014598.7100.0 / 100.0Strict
TkA03G412320LXL04_009238JCVI_TKOH_0014597.399.099 / 100.0Review
TkA03G412420LXL04_009239JCVI_TKOH_0014596.887.47 / 76.132Probable
TkA03G412430LXL04_009240JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G412690LXL04_009243JCVI_TKOH_0014599.2100.0 / 100.0Strict
TkA03G412700LXL04_009244JCVI_TKOH_0014599.2100.0 / 100.0Strict
TkA03G412740LXL04_009246JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G412890LXL04_009247JCVI_TKOH_0014599.7100.0 / 100.0Strict
TkA03G412900LXL04_009248JCVI_TKOH_00145100.0100.0 / 54.348Review
TkA03G412920LXL04_009252JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G413570LXL04_009255JCVI_TKOH_0014590.629.091 / 16.575Complex
TkA03G413640LXL04_009256JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G413650LXL04_009257JCVI_TKOH_0014599.9100.0 / 100.0Strict
TkA03G413660LXL04_009258JCVI_TKOH_0014599.5100.0 / 41.102Review
TkA03G413670LXL04_009258JCVI_TKOH_0014599.693.684 / 56.568Review
TkA03G413700LXL04_009259JCVI_TKOH_0014599.1100.0 / 100.0Complex
TkA03G414200LXL04_009260JCVI_TKOH_00145100.091.667 / 26.243Review
TkA03G414220LXL04_009261JCVI_TKOH_0014599.797.98 / 70.163Complex
TkA03G414320LXL04_009263JCVI_TKOH_0014585.1100.0 / 100.0Review
TkA03G414350LXL04_009264JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G414860LXL04_009270JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G414960LXL04_009273JCVI_TKOH_0014596.9100.0 / 100.0Review
TkA03G415010LXL04_009274JCVI_TKOH_0014594.7100.0 / 100.0Complex
TkA03G415020LXL04_009274JCVI_TKOH_0014576.384.906 / 59.688Complex
TkA03G415250LXL04_009277JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G415260LXL04_009278JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G415500LXL04_009279JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G415610LXL04_009281JCVI_TKOH_00145100.091.498 / 52.681Review
TkA03G415830LXL04_009284JCVI_TKOH_0014599.5100.0 / 100.0Complex
TkA03G415850LXL04_009285JCVI_TKOH_0014599.6100.0 / 100.0Complex
TkA03G415860LXL04_009286JCVI_TKOH_0014599.6100.0 / 100.0Strict
TkA03G415870LXL04_009287JCVI_TKOH_00145100.096.696 / 93.008Strict
TkA03G416060LXL04_009288JCVI_TKOH_0014599.4100.0 / 100.0Strict
TkA03G416090LXL04_009289JCVI_TKOH_0014598.8100.0 / 100.0Strict
TkA03G416100LXL04_009290JCVI_TKOH_0014598.5100.0 / 100.0Strict
TkA03G416110LXL04_009291JCVI_TKOH_0014599.799.747 / 88.839Strict
TkA03G416120LXL04_009292JCVI_TKOH_0014599.8100.0 / 100.0Complex
TkA03G416180LXL04_009295JCVI_TKOH_0014598.342.032 / 27.682Review
TkA03G416530LXL04_009297JCVI_TKOH_00145100.074.528 / 94.048Probable
TkA03G416590LXL04_009299JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G416600LXL04_009300JCVI_TKOH_00145100.0100.0 / 100.0Complex
TkA03G416870LXL04_009301JCVI_TKOH_0014598.7100.0 / 90.588Review
TkA03G417000LXL04_009306JCVI_TKOH_0014598.3100.0 / 100.0Complex
TkA03G417010LXL04_009307JCVI_TKOH_00145100.095.833 / 62.042Review
TkA03G417140LXL04_009309JCVI_TKOH_0014597.2100.0 / 100.0Complex
TkA03G417380LXL04_009310JCVI_TKOH_0014599.5100.0 / 100.0Review
TkA03G418050LXL04_009312JCVI_TKOH_00145100.0100.0 / 100.0Strict
TkA03G418070LXL04_009314JCVI_TKOH_00145100.084.234 / 100.0Strict
TkA03G418130LXL04_009316JCVI_TKOH_0014599.8100.0 / 100.0Strict
TkA03G418200LXL04_009318JCVI_TKOH_0014594.6100.0 / 100.0Probable
TkA03G418220LXL04_009319JCVI_TKOH_0014595.7100.0 / 100.0Strict
TkA03G418230LXL04_009320JCVI_TKOH_00145100.043.357 / 51.667Review
TkA03G418250LXL04_009321JCVI_TKOH_0014598.892.308 / 36.923Review