LXL04_009259 | RubberDandelionOmics

Gene overview

LXL04_009259

Reference: OH-1004 Chr: Chr02 Coordinates: 121460925-121462460 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · LXL04_009259|LXL04_009259|OH1004|cDNA

ATGAAGAAATCCAAGCGTCCAAAGACACCAAAATGCGAAGATAAAGTTGATTATATCAGCAAATTACCGGATCATATTCTTCTCTTGATTCTTTCGCGTCTTCCATTTACCGAAGATGTAATCCGAACCACCACTTTGTCCACTCGATGGACGCATTTGTGGACTTCAATTCCTTCTCTGGACATAGACCATTCCCGAGGACACAATCCCCCCAAAACATTCAAAAACAACAAATTCAAGAAGTTTGTGCATTCAGTTTT...

CDS

Download CDS FASTA

1389 bp · LXL04_009259|LXL04_009259|OH1004|CDS

ATGAAGAAATCCAAGCGTCCAAAGACACCAAAATGCGAAGATAAAGTTGATTATATCAGCAAATTACCGGATCATATTCTTCTCTTGATTCTTTCGCGTCTTCCATTTACCGAAGATGTAATCCGAACCACCACTTTGTCCACTCGATGGACGCATTTGTGGACTTCAATTCCTTCTCTGGACATAGACCATTCCCGAGGACACAATCCCCCCAAAACATTCAAAAACAACAAATTCAAGAAGTTTGTGCATTCAGTTTT...

Protein

Download Protein FASTA

462 aa · LXL04_009259|LXL04_009259|OH1004|PROTEIN

MKKSKRPKTPKCEDKVDYISKLPDHILLLILSRLPFTEDVIRTTTLSTRWTHLWTSIPSLDIDHSRGHNPPKTFKNNKFKKFVHSVLANKSIDLESFRLCCSNHYNMSTIRQWINAAITRNVKLLELKFCPKNECKDIALPNSLITCDSPEILRLHLFTSRLSMPGLIGFPSLRVLQLTNAELYHNDPLQDFLINCPLLEDLSLINCLLEELVFLVINCPKLKNLGIENRNKADYLKFEPVGLCGAILLFCPELVSLEFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009259`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009259

Location Chr02:121460925-121462460 (-)

Description Similar to At5g22730: FBD-associated F-box protein At5g22730

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22730`	FBD-associated F-box protein At5g22730.	No verified direct reference in this release
`At1g78760`	Putative F-box/FBD/LRR-repeat protein At1g78760.	No verified direct reference in this release
`At1g69630`	F-box/LRR-repeat protein 13.	No verified direct reference in this release
`At1g78750`	F-box/FBD/LRR-repeat protein At1g78750.	No verified direct reference in this release
`At1g66290`	Putative F-box/FBD/LRR-repeat protein At1g66290.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009259 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G66290

ath:AT1G69630

ath:AT1G78750

ath:AT1G78760

ath:AT5G22730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.797

Rank 1 · LXL04_009259 · OH-1004

Cytoplasm0.250

Rank 2 · LXL04_009259 · OH-1004

Cell membrane0.044

Rank 3 · LXL04_009259 · OH-1004

Endoplasmic reticulum0.042

Rank 4 · LXL04_009259 · OH-1004

Plastid0.021

Rank 5 · LXL04_009259 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF184-420 aa

PF24758.2LRR_At5g56370111-229 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009259	`PF23622.2`	LRR_At1g61320_AtMIF1	84	420	4.3e-19	69.9
LXL04_009259	`PF24758.2`	LRR_At5g56370	111	229	1.2e-13	52.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNI8`	Arabidopsis thaliana	FBD-associated F-box protein At5g22730	26.957%	Swiss-Prot	weak database homology
`Q9ZV94`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At1g78760	24.516%	Swiss-Prot	weak database homology
`Q9FWZ1`	Arabidopsis thaliana	F-box/LRR-repeat protein 13	26.452%	Swiss-Prot	weak database homology
`Q9ZV93`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g78750	23.890%	Swiss-Prot	weak database homology
`Q9C8Y8`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At1g66290	25.052%	Swiss-Prot	weak database homology

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