LXL04_009217 | RubberDandelionOmics

Gene overview

LXL04_009217

Reference: OH-1004 Chr: Chr02 Coordinates: 120649973-120650470 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

498 bp · LXL04_009217|LXL04_009217|OH1004|cDNA

ATGGTTTCTTCATGTTTCGTACCTCTGTTTCTTGCTCTTTTCATTTCTAGCACTCTTGTTGTCAATGGAGACATCGATTTGATCCAGAAAACCTGCAAATCCACCAAATTTTACGACCTCTGCATCTCGTCTCTCCAATCCGACTCAACCAGCCCGGAAGCCGACACAAAAGGGCTCGCGCTTATAATGGCGAAAGTTGCGATGGCGAATGCCACCAACACCACCTCCTATTTATCATCGAACGTACTCATGATCAAGAA...

CDS

Download CDS FASTA

498 bp · LXL04_009217|LXL04_009217|OH1004|CDS

ATGGTTTCTTCATGTTTCGTACCTCTGTTTCTTGCTCTTTTCATTTCTAGCACTCTTGTTGTCAATGGAGACATCGATTTGATCCAGAAAACCTGCAAATCCACCAAATTTTACGACCTCTGCATCTCGTCTCTCCAATCCGACTCAACCAGCCCGGAAGCCGACACAAAAGGGCTCGCGCTTATAATGGCGAAAGTTGCGATGGCGAATGCCACCAACACCACCTCCTATTTATCATCGAACGTACTCATGATCAAGAA...

Protein

Download Protein FASTA

165 aa · LXL04_009217|LXL04_009217|OH1004|PROTEIN

MVSSCFVPLFLALFISSTLVVNGDIDLIQKTCKSTKFYDLCISSLQSDSTSPEADTKGLALIMAKVAMANATNTTSYLSSNVLMIKNTDSFAKRALKQCADKYSAAGTALQNSVQDLSSELYDYAYMHVMAAADYANACRNGFMRYPRLVYPPEIAAREEGLKRI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009217`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009217

Location Chr02:120649973-120650470 (+)

Description Similar to C/VIF2: Cell wall / vacuolar inhibitor of fructosidase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64620`	Inhibits fructosidases from both cell wall (cell wall invertase CWI) and vacuoles (vacuolar invertase VI).	In Arabidopsis thaliana, the invertase inhibitors AtC/VIF1 and 2 exhibit distinct target enzyme specificities and expression profiles.2004 · DOI: 10.1016/j.febslet.2004.07.062
`At1g47960`	Inhibits fructosidases from vacuoles (vacuolar invertase VI).	In Arabidopsis thaliana, the invertase inhibitors AtC/VIF1 and 2 exhibit distinct target enzyme specificities and expression profiles.2004 · DOI: 10.1016/j.febslet.2004.07.062

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0108100`	Pectin methylesterase (PME) inhibitor that inhibits PME in vitro.	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.2017 · DOI: 10.1016/j.jplph.2016.11.006

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009217 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0009846 pollen germination Biological Process

GO:0043086 negative regulation of catalytic activity Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0043667 pollen wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G47960

ath:AT5G64620

dosa:Os08g0108100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.579

Rank 1 · LXL04_009217 · OH-1004

Endoplasmic reticulum0.129

Rank 2 · LXL04_009217 · OH-1004

Cytoplasm0.115

Rank 3 · LXL04_009217 · OH-1004

Lysosome / Vacuole0.096

Rank 4 · LXL04_009217 · OH-1004

Cell membrane0.085

Rank 5 · LXL04_009217 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043.21PMEI26-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009217	`PF04043.21`	PMEI	26	144	2.1e-23	83.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49603`	Arabidopsis thaliana	Cell wall / vacuolar inhibitor of fructosidase 2	47.024%	Swiss-Prot	moderate database homology
`F4HWQ8`	Arabidopsis thaliana	Cell wall / vacuolar inhibitor of fructosidase 1	33.051%	Swiss-Prot	moderate database homology
`Q0J8J8`	Oryza sativa subsp. japonica	Pectinesterase inhibitor 28	35.172%	Swiss-Prot	moderate database homology

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