Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1803 bp · LXL04_009290|LXL04_009290|OH1004|cDNA
ATGGCGAAAGAAAAGAGCGATGTGTCTTCCATGGAAGTCGATGATCAGATCAGTATCAATCCCAAGTTCTCAATCCACGTGCTGCAGCTTCTAAAATCATCGCAGATGCAGCATGGATTGCGTTTTGGGGACTACACTCGCTATCGGAGATATTGCACTGCTCGGCTACGGAGACTGTACAAATCGTTGAAGTTCACACATGGGCGTGGGAAATATGCCAAAAAGTCTGTAACAGCATCTACTGTTACTGAAGTTAGATT...
1803 bp · LXL04_009290|LXL04_009290|OH1004|CDS
ATGGCGAAAGAAAAGAGCGATGTGTCTTCCATGGAAGTCGATGATCAGATCAGTATCAATCCCAAGTTCTCAATCCACGTGCTGCAGCTTCTAAAATCATCGCAGATGCAGCATGGATTGCGTTTTGGGGACTACACTCGCTATCGGAGATATTGCACTGCTCGGCTACGGAGACTGTACAAATCGTTGAAGTTCACACATGGGCGTGGGAAATATGCCAAAAAGTCTGTAACAGCATCTACTGTTACTGAAGTTAGATT...
Protein
Download Protein FASTA600 aa · LXL04_009290|LXL04_009290|OH1004|PROTEIN
MAKEKSDVSSMEVDDQISINPKFSIHVLQLLKSSQMQHGLRFGDYTRYRRYCTARLRRLYKSLKFTHGRGKYAKKSVTASTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRSYLIGRLRKAVKWATLFAELCALKGDSRTSLEAEAYSSYMKGNLLFEQDQNWDIALKSFKSARQGYKNRVVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGESNLQASELVHIGEIEGPALDLFKAKLEAVMDEARSQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009290 |
|---|---|
| TK1151 ID | TkA03G416100 |
| OH-1004 ID | LXL04_009290 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009290 |
|---|---|
| Location | Chr02:122086251-122089395 (+) |
| Description | Similar to Srp68: Signal recognition particle subunit SRP68 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006614 SRP-dependent cotranslational protein targeting to membrane Biological Process GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition Biological Process GO:0009410 response to xenobiotic stimulus Biological Process GO:0005730 nucleolus Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005786 signal recognition particle, endoplasmic reticulum targeting Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0005925 focal adhesion Cellular Component GO:0048500 signal recognition particle Cellular Component GO:0003723 RNA binding Molecular Function GO:0005047 signal recognition particle binding Molecular Function |
| KEGG gene cross-reference | cel:CELE_F55C5.8 cfa:403952 dme:Dmel_CG5064 hsa:6730 mmu:217337 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16969.11SRP6840-577 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009290 | PF16969.11 | SRP68 | 40 | 577 | 1.3e-153 | 513.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.