Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00090
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 486
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00090

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00090 Chr02 99594883-115215777 Chr03 42079865-58122381 mixed High 200 anchors
Chr02 99594883-115215777 Chr03 42079865-58122381 JCVI_TKOH_00090 · 486 gene pairs TkA02G391920 | LXL04_014853 | 99.2% | RBH_high_identity_coverage_synteny | Strict TkA02G392000 | LXL04_014851 | 99.2% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G392030 | LXL04_014850 | 97.2% | sequence_supported_annotation_or_model_conflict | Review TkA02G392060 | LXL04_014850 | 99.6% | sequence_supported_annotation_or_model_conflict | Review TkA02G392140 | LXL04_014834 | 74.6% | multi_source_to_OH1004 | Complex TkA02G392250 | LXL04_014847 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA02G392390 | LXL04_014846 | 98.6% | RBH_high_identity_coverage_synteny | Strict TkA02G392400 | LXL04_014845 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA02G392430 | LXL04_014844 | 99.9% | sequence_supported_annotation_or_model_conflict | Review TkA02G392700 | LXL04_014840 | 90.0% | RBH_sequence_supported | Probable TkA02G393150 | LXL04_014838 | 98.8% | RBH_high_identity_coverage_synteny | Strict TkA02G393290 | LXL04_014837 | 100.0% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00090 Chr02:99594883-115215777 Chr03:42079865-58122381 mixed 486 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 486 · Showing 1–200 · Page 1/3

TkA02G391920 → LXL04_014853
99.2%
TkA02G392000 → LXL04_014851
99.2%
TkA02G392030 → LXL04_014850
97.2%
TkA02G392060 → LXL04_014850
99.6%
TkA02G392140 → LXL04_014834
74.6%
TkA02G392250 → LXL04_014847
99.5%
TkA02G392390 → LXL04_014846
98.6%
TkA02G392400 → LXL04_014845
99.1%
TkA02G392430 → LXL04_014844
99.9%
TkA02G392700 → LXL04_014840
90.0%
TkA02G393150 → LXL04_014838
98.8%
TkA02G393290 → LXL04_014837
100.0%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA02G391920LXL04_014853JCVI_TKOH_0009099.290.331 / 100.0Strict
TkA02G392000LXL04_014851JCVI_TKOH_0009099.272.626 / 56.522Review
TkA02G392030LXL04_014850JCVI_TKOH_0009097.2100.0 / 45.513Review
TkA02G392060LXL04_014850JCVI_TKOH_0009099.687.986 / 39.904Review
TkA02G392140LXL04_014834JCVI_TKOH_0009074.689.433 / 72.899Complex
TkA02G392250LXL04_014847JCVI_TKOH_0009099.5100.0 / 100.0Strict
TkA02G392390LXL04_014846JCVI_TKOH_0009098.697.345 / 96.774Strict
TkA02G392400LXL04_014845JCVI_TKOH_0009099.1100.0 / 100.0Strict
TkA02G392430LXL04_014844JCVI_TKOH_0009099.999.302 / 50.713Review
TkA02G392700LXL04_014840JCVI_TKOH_0009090.0100.0 / 96.774Probable
TkA02G393150LXL04_014838JCVI_TKOH_0009098.8100.0 / 91.295Strict
TkA02G393290LXL04_014837JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G393310LXL04_014836JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G393410LXL04_014834JCVI_TKOH_0009072.987.368 / 71.218Complex
TkA02G393510LXL04_014834JCVI_TKOH_0009076.192.042 / 72.899Complex
TkA02G393520LXL04_014832JCVI_TKOH_0009098.2100.0 / 100.0Complex
TkA02G393530LXL04_014831JCVI_TKOH_0009099.4100.0 / 100.0Strict
TkA02G393540LXL04_014829JCVI_TKOH_0009093.6100.0 / 100.0Complex
TkA02G393560LXL04_014827JCVI_TKOH_0009083.0100.0 / 100.0Review
TkA02G393820LXL04_014825JCVI_TKOH_00090100.093.694 / 31.231Review
TkA02G393850LXL04_014824JCVI_TKOH_0009077.5100.0 / 73.231Complex
TkA02G394010LXL04_014822JCVI_TKOH_00090100.0100.0 / 46.29Review
TkA02G394240LXL04_014824JCVI_TKOH_0009078.0100.0 / 86.233Complex
TkA02G394510LXL04_014820JCVI_TKOH_0009099.897.474 / 100.0Complex
TkA02G394700LXL04_014818JCVI_TKOH_0009098.993.883 / 52.142Review
TkA02G394860LXL04_014815JCVI_TKOH_0009096.3100.0 / 100.0Strict
TkA02G394900LXL04_014814JCVI_TKOH_0009094.8100.0 / 94.224Complex
TkA02G394970LXL04_014813JCVI_TKOH_0009095.766.906 / 69.403Review
TkA02G395030LXL04_014812JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G395520LXL04_014810JCVI_TKOH_0009093.8100.0 / 87.917Probable
TkA02G395540LXL04_014808JCVI_TKOH_0009098.8100.0 / 99.823Strict
TkA02G395550LXL04_014807JCVI_TKOH_00090100.0100.0 / 92.683Strict
TkA02G395810LXL04_014804JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G395840LXL04_014803JCVI_TKOH_0009099.2100.0 / 70.588Complex
TkA02G395890LXL04_014802JCVI_TKOH_0009096.2100.0 / 98.938Strict
TkA02G395900LXL04_014801JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G396410LXL04_014800JCVI_TKOH_0009099.8100.0 / 100.0Strict
TkA02G396460LXL04_014799JCVI_TKOH_00090100.0100.0 / 89.928Review
TkA02G396470LXL04_014798JCVI_TKOH_0009092.9100.0 / 81.368Probable
TkA02G396790LXL04_014797JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G396810LXL04_014796JCVI_TKOH_0009099.4100.0 / 100.0Strict
TkA02G396920LXL04_014794JCVI_TKOH_0009098.9100.0 / 100.0Strict
TkA02G396940LXL04_014793JCVI_TKOH_0009097.799.085 / 88.423Strict
TkA02G397000LXL04_014792JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G397080LXL04_014791JCVI_TKOH_0009087.794.464 / 59.459Complex
TkA02G397180LXL04_014788JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G397230LXL04_014787JCVI_TKOH_0009096.5100.0 / 100.0Strict
TkA02G397240LXL04_014786JCVI_TKOH_0009095.9100.0 / 100.0Strict
TkA02G397250LXL04_014784JCVI_TKOH_0009099.2100.0 / 100.0Strict
TkA02G397300LXL04_014780JCVI_TKOH_0009089.799.684 / 23.185Complex
TkA02G397570LXL04_014780JCVI_TKOH_0009098.198.361 / 13.333Review
TkA02G397810LXL04_014777JCVI_TKOH_0009098.1100.0 / 30.747Review
TkA02G397820LXL04_014777JCVI_TKOH_0009085.096.986 / 29.31Complex
TkA02G397830LXL04_014776JCVI_TKOH_0009099.0100.0 / 100.0Strict
TkA02G397950LXL04_014775JCVI_TKOH_0009086.494.702 / 48.808Complex
TkA02G397990LXL04_014773JCVI_TKOH_0009091.096.947 / 41.213Complex
TkA02G398050LXL04_014773JCVI_TKOH_0009094.089.216 / 18.705Complex
TkA02G398060LXL04_014773JCVI_TKOH_0009081.097.765 / 36.177Complex
TkA02G398290LXL04_014773JCVI_TKOH_0009090.399.69 / 67.009Complex
TkA02G398480LXL04_014773JCVI_TKOH_0009092.296.825 / 99.897Complex
TkA02G398490LXL04_014771JCVI_TKOH_0009099.798.675 / 96.44Strict
TkA02G398840LXL04_014770JCVI_TKOH_0009099.8100.0 / 74.218Probable
TkA02G398900LXL04_014767JCVI_TKOH_0009076.3100.0 / 38.856Review
TkA02G398910LXL04_014766JCVI_TKOH_0009099.9100.0 / 99.854Strict
TkA02G398960LXL04_014764JCVI_TKOH_0009097.837.815 / 16.729Complex
TkA02G398970LXL04_014763JCVI_TKOH_0009098.998.623 / 72.47Complex
TkA02G399160LXL04_014761JCVI_TKOH_0009098.1100.0 / 100.0Strict
TkA02G399360LXL04_014760JCVI_TKOH_0009098.9100.0 / 100.0Strict
TkA02G399380LXL04_014758JCVI_TKOH_0009099.6100.0 / 100.0Strict
TkA02G399430LXL04_014756JCVI_TKOH_0009097.3100.0 / 100.0Review
TkA02G399450LXL04_014755JCVI_TKOH_0009094.6100.0 / 100.0Probable
TkA02G399810LXL04_014750JCVI_TKOH_0009098.775.238 / 34.423Complex
TkA02G399880LXL04_014750JCVI_TKOH_0009099.3100.0 / 61.22Review
TkA02G399890LXL04_014749JCVI_TKOH_00090100.0100.0 / 100.0Complex
TkA02G399950LXL04_014748JCVI_TKOH_00090100.0100.0 / 100.0Complex
TkA02G399960LXL04_014747JCVI_TKOH_0009098.6100.0 / 100.0Strict
TkA02G400000LXL04_014745JCVI_TKOH_0009084.188.991 / 89.381Complex
TkA02G400020LXL04_014744JCVI_TKOH_0009095.8100.0 / 97.009Strict
TkA02G400090LXL04_014742JCVI_TKOH_0009097.385.606 / 74.342Complex
TkA02G400370LXL04_014739JCVI_TKOH_0009098.1100.0 / 100.0Strict
TkA02G400390LXL04_014738JCVI_TKOH_0009089.6100.0 / 100.0Review
TkA02G400400LXL04_014737JCVI_TKOH_0009099.097.987 / 43.068Review
TkA02G400410LXL04_014737JCVI_TKOH_0009076.0100.0 / 50.442Complex
TkA02G401220LXL04_014735JCVI_TKOH_0009099.4100.0 / 100.0Strict
TkA02G401260LXL04_014733JCVI_TKOH_0009099.6100.0 / 100.0Strict
TkA02G401290LXL04_014732JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G401300LXL04_014731JCVI_TKOH_00090100.033.268 / 24.855Review
TkA02G401470LXL04_014729JCVI_TKOH_0009099.199.138 / 55.556Review
TkA02G402170LXL04_014727JCVI_TKOH_0009084.051.707 / 12.297Complex
TkA02G402200LXL04_014726JCVI_TKOH_00090100.0100.0 / 100.0Review
TkA02G402270LXL04_014725JCVI_TKOH_0009099.0100.0 / 100.0Strict
TkA02G402380LXL04_014724JCVI_TKOH_0009095.8100.0 / 98.249Strict
TkA02G402410LXL04_014722JCVI_TKOH_0009099.1100.0 / 100.0Strict
TkA02G402580LXL04_014720JCVI_TKOH_00090100.0100.0 / 100.0Complex
TkA02G402670LXL04_014719JCVI_TKOH_0009098.8100.0 / 100.0Strict
TkA02G402740LXL04_014718JCVI_TKOH_0009099.7100.0 / 100.0Strict
TkA02G402760LXL04_014717JCVI_TKOH_0009098.0100.0 / 100.0Strict
TkA02G402920LXL04_014716JCVI_TKOH_0009097.099.576 / 90.734Strict
TkA02G402950LXL04_014715JCVI_TKOH_0009098.6100.0 / 100.0Strict
TkA02G403000LXL04_014713JCVI_TKOH_0009098.899.235 / 86.356Strict
TkA02G403020LXL04_014712JCVI_TKOH_0009099.9100.0 / 100.0Review
TkA02G403390LXL04_014709JCVI_TKOH_0009098.8100.0 / 100.0Strict
TkA02G403840LXL04_014707JCVI_TKOH_0009082.7100.0 / 76.531Review
TkA02G404190LXL04_014706JCVI_TKOH_0009099.599.497 / 78.338Complex
TkA02G404200LXL04_014705JCVI_TKOH_0009094.4100.0 / 62.025Review
TkA02G404250LXL04_014704JCVI_TKOH_0009097.1100.0 / 100.0Strict
TkA02G404260LXL04_014703JCVI_TKOH_0009093.8100.0 / 100.0Probable
TkA02G404340LXL04_014701JCVI_TKOH_0009093.0100.0 / 72.283Probable
TkA02G404350LXL04_014700JCVI_TKOH_0009097.399.839 / 93.145Strict
TkA02G404410LXL04_014696JCVI_TKOH_00090100.0100.0 / 96.069Complex
TkA02G404430LXL04_014695JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G404450LXL04_014694JCVI_TKOH_0009076.8100.0 / 100.0Review
TkA02G404460LXL04_014693JCVI_TKOH_0009098.9100.0 / 100.0Strict
TkA02G404530LXL04_014692JCVI_TKOH_0009097.2100.0 / 96.862Complex
TkA02G404540LXL04_014691JCVI_TKOH_0009096.1100.0 / 100.0Strict
TkA02G404550LXL04_014690JCVI_TKOH_0009083.3100.0 / 32.303Complex
TkA02G404580LXL04_014690JCVI_TKOH_0009099.598.656 / 56.723Review
TkA02G404600LXL04_014689JCVI_TKOH_0009092.3100.0 / 100.0Probable
TkA02G404790LXL04_014686JCVI_TKOH_0009099.1100.0 / 62.5Complex
TkA02G404810LXL04_014685JCVI_TKOH_0009098.293.365 / 100.0Strict
TkA02G404820LXL04_014684JCVI_TKOH_0009098.6100.0 / 97.784Complex
TkA02G404960LXL04_014680JCVI_TKOH_0009070.596.262 / 39.205Complex
TkA02G405040LXL04_014683JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G405070LXL04_014682JCVI_TKOH_00090100.0100.0 / 99.594Strict
TkA02G405080LXL04_014681JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G405150LXL04_014680JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G405160LXL04_014678JCVI_TKOH_0009059.3100.0 / 100.0Review
TkA02G405430LXL04_014676JCVI_TKOH_00090100.094.349 / 100.0Complex
TkA02G405630LXL04_014672JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G405820LXL04_014669JCVI_TKOH_00090100.076.923 / 68.75Complex
TkA02G405850LXL04_014668JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G405870LXL04_014666JCVI_TKOH_0009094.962.105 / 39.865Complex
TkA02G405980LXL04_014664JCVI_TKOH_0009095.5100.0 / 100.0Strict
TkA02G405990LXL04_014663JCVI_TKOH_00090100.0100.0 / 100.0Complex
TkA02G406000LXL04_014662JCVI_TKOH_0009099.3100.0 / 100.0Strict
TkA02G406040LXL04_014661JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406120LXL04_014659JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406250LXL04_014658JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406260LXL04_014657JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406300LXL04_014656JCVI_TKOH_00090100.0100.0 / 100.0Complex
TkA02G406340LXL04_014655JCVI_TKOH_0009093.1100.0 / 100.0Probable
TkA02G406350LXL04_014654JCVI_TKOH_0009082.2100.0 / 100.0Review
TkA02G406380LXL04_014653JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406390LXL04_014652JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G406400LXL04_014651JCVI_TKOH_0009092.0100.0 / 100.0Probable
TkA02G406450LXL04_014649JCVI_TKOH_0009099.194.413 / 92.098Complex
TkA02G406660LXL04_014648JCVI_TKOH_0009097.4100.0 / 41.365Review
TkA02G406670LXL04_014647JCVI_TKOH_0009096.8100.0 / 100.0Strict
TkA02G406800LXL04_014644JCVI_TKOH_0009096.9100.0 / 76.638Probable
TkA02G406840LXL04_014643JCVI_TKOH_0009099.4100.0 / 100.0Strict
TkA02G406860LXL04_014642JCVI_TKOH_0009096.999.429 / 89.735Strict
TkA02G406890LXL04_014640JCVI_TKOH_0009099.0100.0 / 100.0Complex
TkA02G406920LXL04_014637JCVI_TKOH_0009097.8100.0 / 100.0Strict
TkA02G406970LXL04_014636JCVI_TKOH_0009099.7100.0 / 52.162Review
TkA02G406990LXL04_014635JCVI_TKOH_0009099.2100.0 / 91.399Strict
TkA02G407000LXL04_014634JCVI_TKOH_0009093.1100.0 / 100.0Probable
TkA02G407010LXL04_014633JCVI_TKOH_0009095.1100.0 / 100.0Strict
TkA02G407060LXL04_014632JCVI_TKOH_0009098.5100.0 / 100.0Strict
TkA02G407110LXL04_014631JCVI_TKOH_0009099.2100.0 / 95.543Strict
TkA02G407240LXL04_014628JCVI_TKOH_0009098.2100.0 / 100.0Strict
TkA02G407250LXL04_014627JCVI_TKOH_0009092.1100.0 / 100.0Probable
TkA02G407430LXL04_014625JCVI_TKOH_0009098.5100.0 / 100.0Complex
TkA02G407920LXL04_014622JCVI_TKOH_0009099.0100.0 / 52.695Review
TkA02G408210LXL04_014622JCVI_TKOH_0009062.699.409 / 88.679Complex
TkA02G408370LXL04_014616JCVI_TKOH_0009067.1100.0 / 100.0Review
TkA02G408400LXL04_014615JCVI_TKOH_0009099.5100.0 / 100.0Complex
TkA02G408540LXL04_014614JCVI_TKOH_0009099.5100.0 / 100.0Strict
TkA02G408680LXL04_014609JCVI_TKOH_0009099.798.962 / 66.051Review
TkA02G408690LXL04_014608JCVI_TKOH_0009090.9100.0 / 61.798Review
TkA02G408700LXL04_014608JCVI_TKOH_0009097.6100.0 / 26.806Review
TkA02G408870LXL04_014607JCVI_TKOH_0009098.587.601 / 99.387Strict
TkA02G408910LXL04_014606JCVI_TKOH_0009070.4100.0 / 100.0Review
TkA02G408920LXL04_014605JCVI_TKOH_0009096.2100.0 / 100.0Strict
TkA02G408950LXL04_014604JCVI_TKOH_0009099.294.102 / 90.525Strict
TkA02G408960LXL04_014603JCVI_TKOH_0009098.096.402 / 94.282Complex
TkA02G408980LXL04_014601JCVI_TKOH_0009097.0100.0 / 100.0Strict
TkA02G409280LXL04_014598JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G409700LXL04_014595JCVI_TKOH_0009099.9100.0 / 100.0Complex
TkA02G410130LXL04_014594JCVI_TKOH_0009098.9100.0 / 100.0Complex
TkA02G410340LXL04_014593JCVI_TKOH_0009099.3100.0 / 50.89Review
TkA02G410600LXL04_014591JCVI_TKOH_0009099.2100.0 / 100.0Strict
TkA02G410730LXL04_014590JCVI_TKOH_0009087.292.23 / 100.0Review
TkA02G410900LXL04_014585JCVI_TKOH_00090100.0100.0 / 100.0Strict
TkA02G411260LXL04_014583JCVI_TKOH_0009098.798.602 / 73.66Probable
TkA02G411280LXL04_014582JCVI_TKOH_0009097.593.676 / 87.778Complex
TkA02G411290LXL04_014581JCVI_TKOH_0009096.7100.0 / 89.718Complex
TkA02G411680LXL04_014574JCVI_TKOH_0009082.298.201 / 81.277Complex
TkA02G411850LXL04_014574JCVI_TKOH_0009084.698.201 / 81.277Complex
TkA02G411910LXL04_014574JCVI_TKOH_0009074.498.997 / 70.638Complex
TkA02G411940LXL04_014578JCVI_TKOH_00090100.0100.0 / 48.207Review
TkA02G412390LXL04_014574JCVI_TKOH_0009075.398.997 / 70.638Complex
TkA02G412780LXL04_014563JCVI_TKOH_0009094.4100.0 / 66.541Complex
TkA02G412790LXL04_014562JCVI_TKOH_0009098.594.297 / 87.856Strict
TkA02G412880LXL04_014561JCVI_TKOH_0009099.3100.0 / 100.0Strict
TkA02G413040LXL04_014560JCVI_TKOH_0009090.2100.0 / 100.0Complex
TkA02G413050LXL04_014560JCVI_TKOH_0009087.597.561 / 93.529Complex
TkA02G413160LXL04_014558JCVI_TKOH_0009086.3100.0 / 67.308Review
TkA02G413240LXL04_014555JCVI_TKOH_0009086.1100.0 / 100.0Complex
TkA02G413380LXL04_014554JCVI_TKOH_0009099.8100.0 / 97.115Strict
TkA02G413460LXL04_014552JCVI_TKOH_0009090.9100.0 / 44.182Review