Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1707 bp · LXL04_014691|LXL04_014691|OH1004|cDNA
ATGGGGAAAAGCGATAAATCGAGTTTGGGAAGAGCCCTAGTCAAGCATCACAACCATATGATCCAAGAATCAAAGGAAAAGGGTCTGGTTTACTATAAACAACACAAGAAGGTTCTTGAATCCGTCACCGACGTCCGCGATATCGACGCCGTAATCCAAGAAGCCGATGAAGATGTTCGTCTCTACTCCGCCGACAACCCAACCGTGAACACCCTTATTGATTTAGAGTCAAGTTCTGGCGCCAGTGAGATGTTGACTAC...
1707 bp · LXL04_014691|LXL04_014691|OH1004|CDS
ATGGGGAAAAGCGATAAATCGAGTTTGGGAAGAGCCCTAGTCAAGCATCACAACCATATGATCCAAGAATCAAAGGAAAAGGGTCTGGTTTACTATAAACAACACAAGAAGGTTCTTGAATCCGTCACCGACGTCCGCGATATCGACGCCGTAATCCAAGAAGCCGATGAAGATGTTCGTCTCTACTCCGCCGACAACCCAACCGTGAACACCCTTATTGATTTAGAGTCAAGTTCTGGCGCCAGTGAGATGTTGACTAC...
Protein
Download Protein FASTA568 aa · LXL04_014691|LXL04_014691|OH1004|PROTEIN
MGKSDKSSLGRALVKHHNHMIQESKEKGLVYYKQHKKVLESVTDVRDIDAVIQEADEDVRLYSADNPTVNTLIDLESSSGASEMLTTEERRELQKKEEALHAGSLNVPRRPAWNAKMTVEELDVNERRAFLEWRRSLARLEENDSLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPRSVRQKWANYFHLHDILYIFWSAKVATAELEGKKPVSTPSDNNFSNND...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_014691 |
|---|---|
| TK1151 ID | TkA02G404540 |
| OH-1004 ID | LXL04_014691 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_014691 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:55051836-55055372 (+) | |||||||||
| Description | Similar to LSG1-2: GTPase LSG1-2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000027 ribosomal large subunit assembly Biological Process GO:0000054 ribosomal subunit export from nucleus Biological Process GO:0006364 rRNA processing Biological Process GO:0015031 protein transport Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0048366 leaf development Biological Process GO:0048825 cotyledon development Biological Process GO:0051168 nuclear export Biological Process GO:0090070 positive regulation of ribosome biogenesis Biological Process GO:0180023 cytosolic large ribosomal subunit assembly Biological Process GO:2000012 regulation of auxin polar transport Biological Process GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G08410 ath:AT2G27200 dme:Dmel_CG14788 sce:YGL099W spo:2541449 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01926.30MMR_HSR1300-372 aaPF02421.25FeoB_N300-371 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_014691 | PF01926.30 | MMR_HSR1 | 300 | 372 | 1.2e-18 | 68.0 |
| LXL04_014691 | PF02421.25 | FeoB_N | 300 | 371 | 3.1e-06 | 27.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.