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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G404540
Reference: TK1151 Chr: Chr02 Coordinates: 102775038-102782122 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1433 bp · TkA02G404540|TK1151|cDNA

AAGGCTTCAAGGCTCTTGAGATGACCTTTCTTTTTGCAGTTCTAATAGGGATTTTTTATTATAACGATCATGGCTGCTGCTGCTGCACATTTGGGCGTTGTATATCAGGGCTCCGTTACTGGCTCCCTCAACAGTGATTCTTCGCTTCACAAGTCATTTCTCAAGACTGAGAAGATCAGCTTTGGTGATAAATCATGGGCTCGTTTTTCACCACTGGAGCTAAAATCAAAGGCCAAATCGTCAAGTTACGGATCCATAAT...

CDS

Download CDS FASTA

1704 bp · TkA02G404540|TK1151|CDS

ATGGGGAAAAGCGATAAATCGAGTTTGGGAAGAGCCCTAGTCAAGCATCACAACCATATGATCCAAGAATCAAAGGAAAAGGGTCAGGTTTACTATAAACAACACAAGAAGGTTCTTGAATCCGTCACCGACGTCCGCGATATCGACGCCGTAATCCAAGAAGCCGATGAAGATGTTCGTCTCTACTCCGCCGACAACCCAACCGTGAACACCCTTATTGATTTAGAGTCAAGTTCTGGCGCCAGTGAGATGTTGACTAC...

Protein

Download Protein FASTA

567 aa · TkA02G404540|TK1151|PROTEIN

MGKSDKSSLGRALVKHHNHMIQESKEKGQVYYKQHKKVLESVTDVRDIDAVIQEADEDVRLYSADNPTVNTLIDLESSSGASEMLTTEERRELQKKEEALHAGSLNVPRRPAWNAKMTVEELDVNERRAFLEWRRSLARLEENDSLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPHSVRQKWANYFHHHDILYIFWSAKVATAELEGKKPVSTPSDNNFSNND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G404540
TK1151 IDTkA02G404540
OH-1004 IDLXL04_014691
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G404540
LocationChr02:102775038-102782122 (-)
DescriptionSimilar to LSG1-2: GTPase LSG1-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08410 GTPase involved in ribosome biogenesis (Probable).
The 60S associated ribosome biogenesis factor LSG1-2 is required for 40S maturation in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12703
At2g27200 GTPase that might be redundant with LSG1-2 for ribosome biogenesis (Probable).
The 60S associated ribosome biogenesis factor LSG1-2 is required for 40S maturation in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12703
At1g30510 Maintains the supply of reduced ferredoxin under non-photosynthetic conditions. No verified direct reference in this release
At4g05390 Maintains the supply of reduced ferredoxin under non-photosynthetic conditions. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0784700 May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014691 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000027 ribosomal large subunit assembly Biological Process
GO:0000054 ribosomal subunit export from nucleus Biological Process
GO:0006364 rRNA processing Biological Process
GO:0015031 protein transport Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0048366 leaf development Biological Process
GO:0048825 cotyledon development Biological Process
GO:0051168 nuclear export Biological Process
GO:0090070 positive regulation of ribosome biogenesis Biological Process
GO:0180023 cytosolic large ribosomal subunit assembly Biological Process
GO:2000012 regulation of auxin polar transport Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G08410
ath:AT2G27200
dme:Dmel_CG14788
sce:YGL099W
spo:2541449
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.759
Rank 1 · TkA02G404540 · TK1151
Cytoplasm0.255
Rank 2 · TkA02G404540 · TK1151
Mitochondrion0.042
Rank 3 · TkA02G404540 · TK1151
Cell membrane0.032
Rank 4 · TkA02G404540 · TK1151
Endoplasmic reticulum0.018
Rank 5 · TkA02G404540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04548AIG121-46 aa
PF01926MMR_HSR125-25 aa
PF00350Dynamin_N25-49 aa
PF23134TRIP4_3rd84-102 aa
PF01926MMR_HSR1163-207 aa
PF00350Dynamin_N165-207 aa
PF02421FeoB_N166-179 aa
PF03193RsgA_GTPase200-236 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G404540PF04548AIG121460.3410.9
TkA02G404540PF01926MMR_HSR125251.4e-1867.8
TkA02G404540PF00350Dynamin_N25490.1612.7
TkA02G404540PF23134TRIP4_3rd841020.2212.6
TkA02G404540PF01926MMR_HSR11632071.4e-1867.8
TkA02G404540PF00350Dynamin_N1652070.1612.7
TkA02G404540PF02421FeoB_N1661793.2e-0627.4
TkA02G404540PF03193RsgA_GTPase2002360.001419.2
TkA02G404540PF03193RsgA_GTPase2853530.001419.2
TkA02G404540PF23134TRIP4_3rd2883050.2212.6
TkA02G404540PF01926MMR_HSR13003721.4e-1867.8
TkA02G404540PF02421FeoB_N3003713.2e-0627.4
TkA02G404540PF00350Dynamin_N3013240.1612.7
TkA02G404540PF04548AIG13033540.3410.9
TkA02G404540PF00350Dynamin_N3423530.1612.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJF1Arabidopsis thalianasp|Q9SJF1|LSG12_ARATH GTPase LSG1-263.300%Swiss-ProtHigh
Q9SHS8Arabidopsis thalianasp|Q9SHS8|LSG11_ARATH GTPase LSG1-162.000%Swiss-ProtHigh
Q9S9P8Arabidopsis thalianasp|Q9S9P8|FNRR2_ARATH Ferredoxin--NADP reductase, root isozyme 2, chloroplastic76.700%Swiss-ProtHigh
Q9M0V6Arabidopsis thalianasp|Q9M0V6|FNRR1_ARATH Ferredoxin--NADP reductase, root isozyme 1, chloroplastic80.600%Swiss-ProtHigh
P41345Oryza sativa subsp. japonicasp|P41345|FENRO_ORYSJ Ferredoxin--NADP reductase, root isozyme, chloroplastic76.800%Swiss-ProtHigh

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