Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00096
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 195
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00096

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00096 Chr02 139235981-145237712 Chr03 12000284-18253114 mixed High 195 anchors
Chr02 139235981-145237712 Chr03 12000284-18253114 JCVI_TKOH_00096 · 195 gene pairs TkA02G539870 | LXL04_012758 | 91.9% | non_reciprocal_best_hit | Complex TkA02G539940 | LXL04_012756 | 100.0% | multi_source_to_OH1004 | Complex TkA02G540020 | LXL04_012754 | 97.4% | non_reciprocal_best_hit | Complex TkA02G540240 | LXL04_012750 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA02G540290 | LXL04_012749 | 99.1% | multi_source_to_OH1004 | Complex TkA02G540320 | LXL04_012748 | 96.8% | RBH_high_identity_coverage_synteny | Strict TkA02G540340 | LXL04_012746 | 93.4% | RBH_sequence_supported | Probable TkA02G540350 | LXL04_012745 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA02G540360 | LXL04_012744 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA02G540410 | LXL04_012743 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA02G540420 | LXL04_012742 | 99.0% | multi_source_to_OH1004 | Complex TkA02G540620 | LXL04_012741 | 100.0% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00096 Chr02:139235981-145237712 Chr03:12000284-18253114 mixed 195 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 195 · Showing 1–195 · Page 1/1

TkA02G539870 → LXL04_012758
91.9%
TkA02G539940 → LXL04_012756
100.0%
TkA02G540020 → LXL04_012754
97.4%
TkA02G540240 → LXL04_012750
99.7%
TkA02G540290 → LXL04_012749
99.1%
TkA02G540320 → LXL04_012748
96.8%
TkA02G540340 → LXL04_012746
93.4%
TkA02G540350 → LXL04_012745
99.7%
TkA02G540360 → LXL04_012744
99.7%
TkA02G540410 → LXL04_012743
100.0%
TkA02G540420 → LXL04_012742
99.0%
TkA02G540620 → LXL04_012741
100.0%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA02G539870LXL04_012758JCVI_TKOH_0009691.994.483 / 29.96Complex
TkA02G539940LXL04_012756JCVI_TKOH_00096100.0100.0 / 84.865Complex
TkA02G540020LXL04_012754JCVI_TKOH_0009697.461.6 / 24.214Complex
TkA02G540240LXL04_012750JCVI_TKOH_0009699.795.973 / 95.017Strict
TkA02G540290LXL04_012749JCVI_TKOH_0009699.199.812 / 100.0Complex
TkA02G540320LXL04_012748JCVI_TKOH_0009696.8100.0 / 100.0Strict
TkA02G540340LXL04_012746JCVI_TKOH_0009693.4100.0 / 100.0Probable
TkA02G540350LXL04_012745JCVI_TKOH_0009699.7100.0 / 91.582Strict
TkA02G540360LXL04_012744JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G540410LXL04_012743JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G540420LXL04_012742JCVI_TKOH_0009699.0100.0 / 100.0Complex
TkA02G540620LXL04_012741JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G540630LXL04_012740JCVI_TKOH_0009698.587.742 / 80.952Strict
TkA02G540680LXL04_012739JCVI_TKOH_0009696.3100.0 / 35.242Review
TkA02G540710LXL04_012737JCVI_TKOH_0009699.1100.0 / 100.0Strict
TkA02G540920LXL04_012735JCVI_TKOH_0009697.75.665 / 51.19Review
TkA02G540970LXL04_012734JCVI_TKOH_0009699.3100.0 / 100.0Strict
TkA02G541000LXL04_012733JCVI_TKOH_0009697.7100.0 / 100.0Strict
TkA02G541140LXL04_012731JCVI_TKOH_0009683.4100.0 / 100.0Complex
TkA02G541150LXL04_012730JCVI_TKOH_0009692.0100.0 / 100.0Probable
TkA02G541220LXL04_012729JCVI_TKOH_0009696.8100.0 / 100.0Strict
TkA02G541230LXL04_012728JCVI_TKOH_0009699.289.711 / 100.0Complex
TkA02G541240LXL04_012727JCVI_TKOH_00096100.095.312 / 99.187Strict
TkA02G541260LXL04_012726JCVI_TKOH_00096100.0100.0 / 89.167Strict
TkA02G541270LXL04_012725JCVI_TKOH_0009698.4100.0 / 100.0Strict
TkA02G542320LXL04_012717JCVI_TKOH_0009699.790.0 / 100.0Strict
TkA02G542410LXL04_012716JCVI_TKOH_0009691.0100.0 / 100.0Complex
TkA02G542970LXL04_012713JCVI_TKOH_0009699.9100.0 / 100.0Complex
TkA02G543460LXL04_012711JCVI_TKOH_0009699.799.167 / 89.698Complex
TkA02G543810LXL04_012709JCVI_TKOH_0009695.6100.0 / 100.0Strict
TkA02G543820LXL04_012708JCVI_TKOH_0009692.5100.0 / 100.0Complex
TkA02G543870LXL04_012706JCVI_TKOH_00096100.0100.0 / 38.968Review
TkA02G543880LXL04_012706JCVI_TKOH_00096100.094.41 / 21.777Review
TkA02G543940LXL04_012706JCVI_TKOH_0009688.793.805 / 15.043Complex
TkA02G544050LXL04_012704JCVI_TKOH_00096100.0100.0 / 93.088Review
TkA02G544490LXL04_012701JCVI_TKOH_0009684.2100.0 / 100.0Complex
TkA02G544640LXL04_012698JCVI_TKOH_00096100.097.573 / 55.602Review
TkA02G544660LXL04_012697JCVI_TKOH_0009694.098.312 / 83.083Probable
TkA02G544940LXL04_012695JCVI_TKOH_0009699.7100.0 / 55.618Review
TkA02G545000LXL04_012694JCVI_TKOH_0009698.6100.0 / 73.506Complex
TkA02G545400LXL04_012689JCVI_TKOH_0009699.895.238 / 57.772Review
TkA02G545410LXL04_012688JCVI_TKOH_0009699.5100.0 / 100.0Complex
TkA02G545750LXL04_012687JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G545780LXL04_012685JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G545790LXL04_012684JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G545840LXL04_012683JCVI_TKOH_00096100.063.025 / 27.076Complex
TkA02G545950LXL04_012679JCVI_TKOH_0009699.6100.0 / 100.0Review
TkA02G545960LXL04_012678JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G546040LXL04_012677JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G546120LXL04_012674JCVI_TKOH_0009690.888.475 / 76.774Probable
TkA02G546200LXL04_012673JCVI_TKOH_0009697.689.037 / 35.127Review
TkA02G546270LXL04_012671JCVI_TKOH_0009699.095.95 / 60.039Review
TkA02G546320LXL04_012669JCVI_TKOH_0009699.4100.0 / 100.0Strict
TkA02G546610LXL04_012666JCVI_TKOH_0009699.291.176 / 40.26Review
TkA02G546640LXL04_012665JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G546670LXL04_012664JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G546700LXL04_012661JCVI_TKOH_00096100.048.408 / 26.207Review
TkA02G546950LXL04_012657JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G547120LXL04_012654JCVI_TKOH_0009699.2100.0 / 100.0Complex
TkA02G547140LXL04_012653JCVI_TKOH_0009699.1100.0 / 100.0Complex
TkA02G547190LXL04_012651JCVI_TKOH_0009699.397.924 / 90.705Complex
TkA02G547250LXL04_012650JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G547450LXL04_012648JCVI_TKOH_0009692.798.489 / 97.587Probable
TkA02G547460LXL04_012647JCVI_TKOH_0009699.3100.0 / 100.0Strict
TkA02G547470LXL04_012646JCVI_TKOH_00096100.0100.0 / 100.0Complex
TkA02G547480LXL04_012645JCVI_TKOH_0009695.5100.0 / 100.0Strict
TkA02G547530LXL04_012643JCVI_TKOH_0009699.4100.0 / 100.0Strict
TkA02G547640LXL04_012642JCVI_TKOH_0009683.099.644 / 76.562Review
TkA02G547650LXL04_012641JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G547660LXL04_012640JCVI_TKOH_00096100.0100.0 / 88.649Strict
TkA02G547670LXL04_012639JCVI_TKOH_0009698.562.963 / 85.0Review
TkA02G547810LXL04_012635JCVI_TKOH_00096100.0100.0 / 64.877Complex
TkA02G548100LXL04_012633JCVI_TKOH_0009698.7100.0 / 90.148Strict
TkA02G548640LXL04_012632JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G548730LXL04_012631JCVI_TKOH_0009698.2100.0 / 100.0Strict
TkA02G548740LXL04_012630JCVI_TKOH_0009697.1100.0 / 100.0Strict
TkA02G548820LXL04_012628JCVI_TKOH_0009695.256.86 / 92.76Review
TkA02G549100LXL04_012624JCVI_TKOH_0009699.699.621 / 83.625Complex
TkA02G549200LXL04_012622JCVI_TKOH_0009698.2100.0 / 100.0Complex
TkA02G549240LXL04_012621JCVI_TKOH_0009697.799.338 / 21.704Review
TkA02G549250LXL04_012620JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G549740LXL04_012614JCVI_TKOH_0009698.9100.0 / 100.0Strict
TkA02G549820LXL04_012613JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G549840LXL04_012612JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G550050LXL04_012611JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G550310LXL04_012609JCVI_TKOH_0009699.6100.0 / 100.0Review
TkA02G550370LXL04_012607JCVI_TKOH_0009691.5100.0 / 97.306Probable
TkA02G550450LXL04_012606JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G550460LXL04_012605JCVI_TKOH_0009694.899.053 / 94.316Probable
TkA02G550780LXL04_012604JCVI_TKOH_0009698.340.972 / 28.922Review
TkA02G550820LXL04_012602JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G550910LXL04_012600JCVI_TKOH_0009678.4100.0 / 96.517Review
TkA02G550990LXL04_012599JCVI_TKOH_0009680.2100.0 / 100.0Review
TkA02G551030LXL04_012597JCVI_TKOH_0009699.1100.0 / 100.0Strict
TkA02G551040LXL04_012596JCVI_TKOH_0009699.196.694 / 22.807Review
TkA02G551090LXL04_012594JCVI_TKOH_0009673.098.14 / 83.186Complex
TkA02G551130LXL04_012594JCVI_TKOH_0009699.5100.0 / 85.398Review
TkA02G551190LXL04_012593JCVI_TKOH_00096100.095.519 / 95.519Complex
TkA02G551200LXL04_012592JCVI_TKOH_0009693.199.859 / 93.183Probable
TkA02G551230LXL04_012591JCVI_TKOH_00096100.097.356 / 86.538Strict
TkA02G551280LXL04_012590JCVI_TKOH_0009686.593.857 / 84.011Review
TkA02G551300LXL04_012588JCVI_TKOH_0009672.599.275 / 99.281Complex
TkA02G551320LXL04_012589JCVI_TKOH_0009697.873.171 / 44.118Review
TkA02G551510LXL04_012584JCVI_TKOH_0009699.899.141 / 97.376Strict
TkA02G551520LXL04_012583JCVI_TKOH_0009691.7100.0 / 100.0Probable
TkA02G551530LXL04_012582JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G551540LXL04_012580JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G552520LXL04_012573JCVI_TKOH_0009699.8100.0 / 100.0Complex
TkA02G552550LXL04_012572JCVI_TKOH_00096100.0100.0 / 100.0Complex
TkA02G552660LXL04_012569JCVI_TKOH_0009698.8100.0 / 96.232Strict
TkA02G552670LXL04_012568JCVI_TKOH_0009699.1100.0 / 100.0Strict
TkA02G552740LXL04_012567JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G552960LXL04_012566JCVI_TKOH_0009698.299.32 / 61.088Review
TkA02G552980LXL04_012565JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G553180LXL04_012564JCVI_TKOH_0009698.7100.0 / 100.0Complex
TkA02G553250LXL04_012560JCVI_TKOH_0009697.0100.0 / 43.23Review
TkA02G553270LXL04_012560JCVI_TKOH_0009698.6100.0 / 23.817Review
TkA02G553280LXL04_012559JCVI_TKOH_0009699.285.194 / 95.897Strict
TkA02G553330LXL04_012558JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G553340LXL04_012557JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G554150LXL04_012531JCVI_TKOH_0009690.296.983 / 15.374Complex
TkA02G554380LXL04_012531JCVI_TKOH_0009674.399.005 / 22.649Complex
TkA02G554440LXL04_012531JCVI_TKOH_0009675.483.595 / 45.024Complex
TkA02G554450LXL04_012531JCVI_TKOH_0009691.895.539 / 17.639Complex
TkA02G554520LXL04_012531JCVI_TKOH_0009644.995.194 / 95.745Complex
TkA02G554600LXL04_012528JCVI_TKOH_0009696.787.5 / 78.448Probable
TkA02G554830LXL04_012531JCVI_TKOH_0009660.795.763 / 27.934Complex
TkA02G555380LXL04_012540JCVI_TKOH_0009699.297.934 / 68.391Complex
TkA02G555580LXL04_012542JCVI_TKOH_0009697.581.0 / 46.821Review
TkA02G555590LXL04_012543JCVI_TKOH_00096100.075.94 / 96.19Review
TkA02G555610LXL04_012545JCVI_TKOH_0009699.693.697 / 50.567Review
TkA02G555780LXL04_012547JCVI_TKOH_0009690.9100.0 / 27.29Complex
TkA02G555800LXL04_012549JCVI_TKOH_0009686.0100.0 / 100.0Review
TkA02G555810LXL04_012550JCVI_TKOH_0009699.2100.0 / 100.0Complex
TkA02G556060LXL04_012535JCVI_TKOH_0009698.661.864 / 51.049Review
TkA02G556210LXL04_012531JCVI_TKOH_0009662.983.313 / 44.955Complex
TkA02G556300LXL04_012531JCVI_TKOH_0009689.288.584 / 13.315Complex
TkA02G556680LXL04_012518JCVI_TKOH_00096100.071.756 / 7.98Review
TkA02G556710LXL04_012517JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G556720LXL04_012516JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G556790LXL04_012515JCVI_TKOH_0009645.483.085 / 83.663Review
TkA02G556810LXL04_012513JCVI_TKOH_00096100.0100.0 / 81.221Strict
TkA02G556830LXL04_012512JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G556990LXL04_012510JCVI_TKOH_00096100.0100.0 / 96.691Strict
TkA02G557130LXL04_012508JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G557150LXL04_012507JCVI_TKOH_0009697.790.141 / 94.118Complex
TkA02G557230LXL04_012506JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G557240LXL04_012505JCVI_TKOH_00096100.094.054 / 100.0Complex
TkA02G557420LXL04_012503JCVI_TKOH_00096100.097.753 / 95.956Strict
TkA02G557440LXL04_012502JCVI_TKOH_0009698.8100.0 / 100.0Complex
TkA02G557740LXL04_012499JCVI_TKOH_0009696.880.255 / 36.103Complex
TkA02G557770LXL04_012498JCVI_TKOH_0009689.8100.0 / 93.588Complex
TkA02G557920LXL04_012495JCVI_TKOH_0009689.599.663 / 96.53Review
TkA02G557930LXL04_012494JCVI_TKOH_0009695.693.472 / 91.52Strict
TkA02G558050LXL04_012491JCVI_TKOH_0009697.5100.0 / 100.0Complex
TkA02G558060LXL04_012490JCVI_TKOH_00096100.0100.0 / 100.0Complex
TkA02G558080LXL04_012489JCVI_TKOH_0009694.3100.0 / 100.0Probable
TkA02G558110LXL04_012488JCVI_TKOH_0009699.795.161 / 100.0Strict
TkA02G558150LXL04_012487JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G558430LXL04_012483JCVI_TKOH_0009696.2100.0 / 100.0Strict
TkA02G558570LXL04_012481JCVI_TKOH_0009699.5100.0 / 75.66Probable
TkA02G558710LXL04_012473JCVI_TKOH_0009692.699.746 / 90.714Review
TkA02G558770LXL04_012473JCVI_TKOH_0009657.6100.0 / 100.0Complex
TkA02G558980LXL04_012473JCVI_TKOH_0009657.9100.0 / 100.0Complex
TkA02G559030LXL04_012473JCVI_TKOH_0009690.0100.0 / 62.857Complex
TkA02G559560LXL04_012465JCVI_TKOH_0009696.5100.0 / 89.076Strict
TkA02G559920LXL04_012461JCVI_TKOH_0009684.5100.0 / 100.0Complex
TkA02G559930LXL04_012460JCVI_TKOH_0009696.6100.0 / 84.148Review
TkA02G560180LXL04_012460JCVI_TKOH_0009674.599.605 / 50.253Complex
TkA02G560190LXL04_012457JCVI_TKOH_0009696.885.586 / 34.799Review
TkA02G560210LXL04_012456JCVI_TKOH_0009699.1100.0 / 100.0Review
TkA02G560430LXL04_012453JCVI_TKOH_0009689.099.127 / 83.824Complex
TkA02G560440LXL04_012455JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G560500LXL04_012454JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G560510LXL04_012453JCVI_TKOH_0009698.292.517 / 100.0Review
TkA02G560640LXL04_012452JCVI_TKOH_00096100.0100.0 / 100.0Strict
TkA02G560740LXL04_012450JCVI_TKOH_0009699.9100.0 / 100.0Strict
TkA02G560750LXL04_012449JCVI_TKOH_0009699.384.762 / 98.524Strict
TkA02G561370LXL04_012439JCVI_TKOH_0009692.487.582 / 81.461Probable
TkA02G561410LXL04_012437JCVI_TKOH_00096100.0100.0 / 46.429Review
TkA02G561420LXL04_012436JCVI_TKOH_0009695.6100.0 / 85.491Complex
TkA02G561450LXL04_012435JCVI_TKOH_0009698.4100.0 / 100.0Strict
TkA02G561460LXL04_012434JCVI_TKOH_0009699.799.496 / 98.339Strict
TkA02G561470LXL04_012433JCVI_TKOH_00096100.0100.0 / 68.75Review
TkA02G561500LXL04_012432JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G561730LXL04_012430JCVI_TKOH_0009699.7100.0 / 100.0Strict
TkA02G561740LXL04_012429JCVI_TKOH_0009699.4100.0 / 98.016Strict
TkA02G561900LXL04_012425JCVI_TKOH_0009699.5100.0 / 100.0Strict
TkA02G561980LXL04_012423JCVI_TKOH_0009694.396.795 / 93.475Complex
TkA02G561990LXL04_012422JCVI_TKOH_00096100.0100.0 / 100.0Review
TkA02G562090LXL04_012421JCVI_TKOH_00096100.0100.0 / 100.0Complex
TkA02G562100LXL04_012420JCVI_TKOH_0009694.0100.0 / 98.947Complex
TkA02G562220LXL04_012420JCVI_TKOH_0009680.6100.0 / 36.842Complex
TkA02G562230LXL04_012419JCVI_TKOH_0009696.296.52 / 54.679Review
TkA02G562250LXL04_012419JCVI_TKOH_0009684.5100.0 / 23.262Complex