Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00303

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 84

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00303

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00303 Chr07 17761009-20750785 Chr06 17300042-20553057 mixed High 84 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00303`	Chr07:17761009-20750785	Chr06:17300042-20553057	mixed	84	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 84 · Showing 1–84 · Page 1/1

Download All Anchors TSV

TkA07G067620 → LXL04_027496

99.2%

TkA07G067630 → LXL04_027497

100.0%

TkA07G068110 → LXL04_027499

90.1%

TkA07G068220 → LXL04_027500

97.8%

TkA07G068230 → LXL04_027501

100.0%

TkA07G068280 → LXL04_027502

98.8%

TkA07G068460 → LXL04_027505

99.7%

TkA07G068560 → LXL04_027506

99.3%

TkA07G068870 → LXL04_027507

100.0%

TkA07G068960 → LXL04_027509

88.5%

TkA07G069110 → LXL04_027512

99.7%

TkA07G069770 → LXL04_027514

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G067620`	`LXL04_027496`	`JCVI_TKOH_00303`	99.2	100.0 / 100.0	Strict
`TkA07G067630`	`LXL04_027497`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G068110`	`LXL04_027499`	`JCVI_TKOH_00303`	90.1	98.058 / 43.701	Review
`TkA07G068220`	`LXL04_027500`	`JCVI_TKOH_00303`	97.8	99.688 / 89.859	Strict
`TkA07G068230`	`LXL04_027501`	`JCVI_TKOH_00303`	100.0	68.468 / 59.375	Review
`TkA07G068280`	`LXL04_027502`	`JCVI_TKOH_00303`	98.8	100.0 / 100.0	Strict
`TkA07G068460`	`LXL04_027505`	`JCVI_TKOH_00303`	99.7	83.538 / 100.0	Strict
`TkA07G068560`	`LXL04_027506`	`JCVI_TKOH_00303`	99.3	97.624 / 65.418	Review
`TkA07G068870`	`LXL04_027507`	`JCVI_TKOH_00303`	100.0	97.442 / 66.261	Review
`TkA07G068960`	`LXL04_027509`	`JCVI_TKOH_00303`	88.5	87.838 / 86.093	Complex
`TkA07G069110`	`LXL04_027512`	`JCVI_TKOH_00303`	99.7	100.0 / 100.0	Strict
`TkA07G069770`	`LXL04_027514`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G069840`	`LXL04_027518`	`JCVI_TKOH_00303`	99.8	100.0 / 92.994	Complex
`TkA07G070630`	`LXL04_027520`	`JCVI_TKOH_00303`	93.1	100.0 / 100.0	Complex
`TkA07G070700`	`LXL04_027523`	`JCVI_TKOH_00303`	100.0	91.155 / 44.645	Review
`TkA07G070940`	`LXL04_027526`	`JCVI_TKOH_00303`	100.0	98.095 / 12.972	Review
`TkA07G071240`	`LXL04_027529`	`JCVI_TKOH_00303`	100.0	96.648 / 80.093	Strict
`TkA07G071270`	`LXL04_027530`	`JCVI_TKOH_00303`	99.4	100.0 / 74.396	Probable
`TkA07G071770`	`LXL04_027535`	`JCVI_TKOH_00303`	99.1	100.0 / 99.115	Review
`TkA07G071820`	`LXL04_027537`	`JCVI_TKOH_00303`	75.3	100.0 / 90.0	Complex
`TkA07G072060`	`LXL04_027537`	`JCVI_TKOH_00303`	99.5	100.0 / 97.556	Complex
`TkA07G072170`	`LXL04_027539`	`JCVI_TKOH_00303`	90.8	100.0 / 100.0	Complex
`TkA07G072200`	`LXL04_027546`	`JCVI_TKOH_00303`	83.3	27.429 / 6.332	Complex
`TkA07G072770`	`LXL04_027546`	`JCVI_TKOH_00303`	99.9	100.0 / 99.604	Complex
`TkA07G072870`	`LXL04_027551`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G072940`	`LXL04_027552`	`JCVI_TKOH_00303`	99.9	100.0 / 100.0	Strict
`TkA07G072960`	`LXL04_027553`	`JCVI_TKOH_00303`	99.8	100.0 / 81.138	Strict
`TkA07G072970`	`LXL04_027554`	`JCVI_TKOH_00303`	98.0	100.0 / 93.609	Strict
`TkA07G072980`	`LXL04_027555`	`JCVI_TKOH_00303`	86.6	100.0 / 100.0	Review
`TkA07G072990`	`LXL04_027560`	`JCVI_TKOH_00303`	72.8	96.403 / 94.681	Complex
`TkA07G073010`	`LXL04_027560`	`JCVI_TKOH_00303`	78.9	98.885 / 92.908	Complex
`TkA07G073020`	`LXL04_027557`	`JCVI_TKOH_00303`	85.0	100.0 / 100.0	Complex
`TkA07G073030`	`LXL04_027560`	`JCVI_TKOH_00303`	65.6	93.789 / 65.957	Complex
`TkA07G073090`	`LXL04_027560`	`JCVI_TKOH_00303`	64.0	69.027 / 92.908	Complex
`TkA07G073120`	`LXL04_027560`	`JCVI_TKOH_00303`	100.0	100.0 / 79.433	Complex
`TkA07G073200`	`LXL04_027562`	`JCVI_TKOH_00303`	91.9	100.0 / 69.789	Review
`TkA07G073210`	`LXL04_027562`	`JCVI_TKOH_00303`	100.0	100.0 / 28.103	Review
`TkA07G073220`	`LXL04_027563`	`JCVI_TKOH_00303`	99.2	90.58 / 75.301	Probable
`TkA07G073230`	`LXL04_027567`	`JCVI_TKOH_00303`	82.4	94.737 / 95.066	Complex
`TkA07G073270`	`LXL04_027567`	`JCVI_TKOH_00303`	77.4	94.771 / 48.026	Complex
`TkA07G073280`	`LXL04_027564`	`JCVI_TKOH_00303`	99.3	100.0 / 100.0	Complex
`TkA07G073330`	`LXL04_027565`	`JCVI_TKOH_00303`	98.4	100.0 / 100.0	Strict
`TkA07G073350`	`LXL04_027568`	`JCVI_TKOH_00303`	71.7	100.0 / 20.107	Complex
`TkA07G073460`	`LXL04_027563`	`JCVI_TKOH_00303`	87.5	78.205 / 38.554	Complex
`TkA07G073480`	`LXL04_027564`	`JCVI_TKOH_00303`	80.5	100.0 / 100.0	Complex
`TkA07G073560`	`LXL04_027566`	`JCVI_TKOH_00303`	100.0	44.828 / 39.394	Review
`TkA07G073580`	`LXL04_027567`	`JCVI_TKOH_00303`	99.0	100.0 / 100.0	Complex
`TkA07G073700`	`LXL04_027568`	`JCVI_TKOH_00303`	90.4	78.302 / 29.715	Complex
`TkA07G073790`	`LXL04_027568`	`JCVI_TKOH_00303`	71.5	49.505 / 21.886	Complex
`TkA07G073800`	`LXL04_027572`	`JCVI_TKOH_00303`	99.7	100.0 / 100.0	Review
`TkA07G073810`	`LXL04_027573`	`JCVI_TKOH_00303`	97.3	95.455 / 66.216	Review
`TkA07G073820`	`LXL04_027574`	`JCVI_TKOH_00303`	99.7	100.0 / 100.0	Complex
`TkA07G074000`	`LXL04_027578`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G074330`	`LXL04_027580`	`JCVI_TKOH_00303`	100.0	92.264 / 98.471	Complex
`TkA07G074340`	`LXL04_027582`	`JCVI_TKOH_00303`	78.2	100.0 / 100.0	Review
`TkA07G075140`	`LXL04_027587`	`JCVI_TKOH_00303`	99.1	100.0 / 100.0	Strict
`TkA07G075170`	`LXL04_027588`	`JCVI_TKOH_00303`	100.0	100.0 / 98.168	Strict
`TkA07G075210`	`LXL04_027589`	`JCVI_TKOH_00303`	98.8	100.0 / 100.0	Review
`TkA07G075250`	`LXL04_027560`	`JCVI_TKOH_00303`	59.7	93.818 / 89.362	Complex
`TkA07G075650`	`LXL04_027567`	`JCVI_TKOH_00303`	57.0	93.354 / 99.013	Complex
`TkA07G076090`	`LXL04_027591`	`JCVI_TKOH_00303`	99.3	93.287 / 67.391	Review
`TkA07G076920`	`LXL04_027595`	`JCVI_TKOH_00303`	99.8	100.0 / 100.0	Strict
`TkA07G076990`	`LXL04_027596`	`JCVI_TKOH_00303`	100.0	73.653 / 76.875	Complex
`TkA07G077110`	`LXL04_027598`	`JCVI_TKOH_00303`	100.0	76.163 / 100.0	Probable
`TkA07G077460`	`LXL04_027599`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G077500`	`LXL04_027600`	`JCVI_TKOH_00303`	99.8	100.0 / 99.692	Strict
`TkA07G077520`	`LXL04_027601`	`JCVI_TKOH_00303`	97.6	100.0 / 52.979	Review
`TkA07G077720`	`LXL04_027602`	`JCVI_TKOH_00303`	56.6	97.717 / 71.368	Complex
`TkA07G077740`	`LXL04_027604`	`JCVI_TKOH_00303`	99.2	100.0 / 100.0	Complex
`TkA07G077750`	`LXL04_027605`	`JCVI_TKOH_00303`	96.9	94.164 / 60.0	Review
`TkA07G078080`	`LXL04_027608`	`JCVI_TKOH_00303`	99.7	100.0 / 100.0	Review
`TkA07G078340`	`LXL04_027611`	`JCVI_TKOH_00303`	99.7	100.0 / 100.0	Review
`TkA07G078490`	`LXL04_027612`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Complex
`TkA07G078700`	`LXL04_027613`	`JCVI_TKOH_00303`	100.0	100.0 / 95.955	Strict
`TkA07G078830`	`LXL04_027614`	`JCVI_TKOH_00303`	94.9	100.0 / 100.0	Probable
`TkA07G078960`	`LXL04_027616`	`JCVI_TKOH_00303`	99.9	100.0 / 98.545	Strict
`TkA07G078970`	`LXL04_027617`	`JCVI_TKOH_00303`	99.2	100.0 / 85.831	Strict
`TkA07G078980`	`LXL04_027618`	`JCVI_TKOH_00303`	99.4	100.0 / 96.169	Strict
`TkA07G079110`	`LXL04_027620`	`JCVI_TKOH_00303`	100.0	100.0 / 86.403	Strict
`TkA07G079120`	`LXL04_027621`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Complex
`TkA07G079200`	`LXL04_027622`	`JCVI_TKOH_00303`	96.7	100.0 / 100.0	Strict
`TkA07G079240`	`LXL04_027623`	`JCVI_TKOH_00303`	99.7	100.0 / 82.974	Strict
`TkA07G079260`	`LXL04_027624`	`JCVI_TKOH_00303`	100.0	100.0 / 100.0	Strict
`TkA07G079290`	`LXL04_027625`	`JCVI_TKOH_00303`	99.8	98.12 / 81.766	Strict