LXL04_027613 | RubberDandelionOmics

Gene overview

LXL04_027613

Reference: OH-1004 Chr: Chr06 Coordinates: 20303846-20306657 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1338 bp · LXL04_027613|LXL04_027613|OH1004|cDNA

ATGGAGGCTCTTCACCTCACCCTTCTCTTCCTTTGTTCCTTGACCCTCGTTCACTCACTCAACCCAAACTGTGACTTACCTAGCCAAGGGTCAACCCTTAGGGTCTACCATGTGTCTAGCCCATGCTCACCATTTAGACCAAAGACACCACTCTCATGGGAGGAGAGTGTGCTCCAAATGCAAGCCGATGACAAGACCAGACTTGTCTTCTTGACAAGTCTGGTTGCAGGGCGGTCTTTTGTACCTATTGGGTCGGGCAG...

CDS

Download CDS FASTA

1338 bp · LXL04_027613|LXL04_027613|OH1004|CDS

ATGGAGGCTCTTCACCTCACCCTTCTCTTCCTTTGTTCCTTGACCCTCGTTCACTCACTCAACCCAAACTGTGACTTACCTAGCCAAGGGTCAACCCTTAGGGTCTACCATGTGTCTAGCCCATGCTCACCATTTAGACCAAAGACACCACTCTCATGGGAGGAGAGTGTGCTCCAAATGCAAGCCGATGACAAGACCAGACTTGTCTTCTTGACAAGTCTGGTTGCAGGGCGGTCTTTTGTACCTATTGGGTCGGGCAG...

Protein

Download Protein FASTA

445 aa · LXL04_027613|LXL04_027613|OH1004|PROTEIN

MEALHLTLLFLCSLTLVHSLNPNCDLPSQGSTLRVYHVSSPCSPFRPKTPLSWEESVLQMQADDKTRLVFLTSLVAGRSFVPIGSGRQIIQSPTYIVRAKIGTPAQSLLMAVDTSTDMALVPCAGCVGCSSVTYDSTKSTSFSSLACGADQCKQVQSTGCSGATCSLNITYGNSVIVANLAQDNLTLATDSVVGYPFSCITKTTGSSLPPQGVLGLGRGPLSFVSQSKSLYQSTFSYCLPSFKSSNFSGTLRLGTNGQPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027613`
TK1151 ID	TkA07G078700
OH-1004 ID	LXL04_027613
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 95.955 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027613

Location Chr06:20303846-20306657 (+)

Description Similar to AED3: Aspartyl protease AED3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09750`	Aspartyl protease AED3.	No verified direct reference in this release
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0186900`	Anther-specific aspartic protease involved in tapetal programmed cell death (PCD).	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.2013 · DOI: 10.1038/ncomms2396

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027613 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01300

ath:AT1G09750

ath:AT3G20015

dosa:Os03g0186900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.548

Rank 1 · LXL04_027613 · OH-1004

Cell membrane0.187

Rank 2 · LXL04_027613 · OH-1004

Endoplasmic reticulum0.111

Rank 3 · LXL04_027613 · OH-1004

Cytoplasm0.077

Rank 4 · LXL04_027613 · OH-1004

Lysosome / Vacuole0.046

Rank 5 · LXL04_027613 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543.12TAXi_N95-254 aa

PF00026.29Asp95-422 aa

PF14541.12TAXi_C277-422 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027613	`PF14543.12`	TAXi_N	95	254	7.9e-30	105.0
LXL04_027613	`PF00026.29`	Asp	95	422	5.4e-14	53.1
LXL04_027613	`PF14541.12`	TAXi_C	277	422	6.6e-30	104.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04496`	Arabidopsis thaliana	Aspartyl protease AED3	47.608%	Swiss-Prot	moderate database homology
`Q9LNJ3`	Arabidopsis thaliana	Aspartyl protease family protein 2	32.297%	Swiss-Prot	moderate database homology
`Q9LHE3`	Arabidopsis thaliana	Protein ASPARTIC PROTEASE IN GUARD CELL 2	33.430%	Swiss-Prot	moderate database homology
`Q6F4N5`	Oryza sativa subsp. japonica	Aspartyl protease 25	42.417%	Swiss-Prot	moderate database homology

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