Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00132
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 175
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00132

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00132 Chr03 38427211-52489198 Chr02 43321785-57333471 mixed High 175 anchors
Chr03 38427211-52489198 Chr02 43321785-57333471 JCVI_TKOH_00132 · 175 gene pairs TkA03G151330 | LXL04_007308 | 100.0% | RBH_sequence_supported | Probable TkA03G151630 | LXL04_007307 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA03G152250 | LXL04_007303 | 97.8% | RBH_high_identity_coverage_synteny | Strict TkA03G153730 | LXL04_007313 | 94.3% | RBH_sequence_supported | Probable TkA03G154320 | LXL04_007315 | 92.9% | RBH_sequence_supported | Probable TkA03G155910 | LXL04_007319 | 85.1% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G156020 | LXL04_007319 | 99.6% | multi_source_to_OH1004 | Complex TkA03G156280 | LXL04_007321 | 99.8% | RBH_high_identity_coverage_synteny | Strict TkA03G157050 | LXL04_007324 | 74.4% | multi_source_to_OH1004 | Complex TkA03G157060 | LXL04_007325 | 100.0% | multi_source_to_OH1004 | Complex TkA03G157130 | LXL04_007326 | 94.2% | RBH_sequence_supported | Probable TkA03G157170 | LXL04_007327 | 99.5% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00132 Chr03:38427211-52489198 Chr02:43321785-57333471 mixed 175 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 175 · Showing 1–175 · Page 1/1

TkA03G151330 → LXL04_007308
100.0%
TkA03G151630 → LXL04_007307
100.0%
TkA03G152250 → LXL04_007303
97.8%
TkA03G153730 → LXL04_007313
94.3%
TkA03G154320 → LXL04_007315
92.9%
TkA03G155910 → LXL04_007319
85.1%
TkA03G156020 → LXL04_007319
99.6%
TkA03G156280 → LXL04_007321
99.8%
TkA03G157050 → LXL04_007324
74.4%
TkA03G157060 → LXL04_007325
100.0%
TkA03G157130 → LXL04_007326
94.2%
TkA03G157170 → LXL04_007327
99.5%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA03G151330LXL04_007308JCVI_TKOH_00132100.0100.0 / 74.238Probable
TkA03G151630LXL04_007307JCVI_TKOH_00132100.090.093 / 19.082Review
TkA03G152250LXL04_007303JCVI_TKOH_0013297.8100.0 / 100.0Strict
TkA03G153730LXL04_007313JCVI_TKOH_0013294.395.444 / 83.626Probable
TkA03G154320LXL04_007315JCVI_TKOH_0013292.995.833 / 99.296Probable
TkA03G155910LXL04_007319JCVI_TKOH_0013285.1100.0 / 96.037Review
TkA03G156020LXL04_007319JCVI_TKOH_0013299.694.332 / 71.037Complex
TkA03G156280LXL04_007321JCVI_TKOH_0013299.8100.0 / 100.0Strict
TkA03G157050LXL04_007324JCVI_TKOH_0013274.4100.0 / 100.0Complex
TkA03G157060LXL04_007325JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G157130LXL04_007326JCVI_TKOH_0013294.298.742 / 92.421Probable
TkA03G157170LXL04_007327JCVI_TKOH_0013299.5100.0 / 100.0Strict
TkA03G157180LXL04_007328JCVI_TKOH_0013299.7100.0 / 91.885Complex
TkA03G157190LXL04_007329JCVI_TKOH_0013290.897.452 / 56.458Complex
TkA03G157230LXL04_007330JCVI_TKOH_0013298.198.998 / 87.225Strict
TkA03G158020LXL04_007332JCVI_TKOH_0013299.3100.0 / 100.0Strict
TkA03G158030LXL04_007333JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G158060LXL04_007334JCVI_TKOH_0013297.5100.0 / 100.0Probable
TkA03G159410LXL04_007336JCVI_TKOH_0013299.898.299 / 61.176Complex
TkA03G159420LXL04_007337JCVI_TKOH_0013299.6100.0 / 100.0Complex
TkA03G159440LXL04_007338JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G159740LXL04_007339JCVI_TKOH_0013299.7100.0 / 100.0Complex
TkA03G159960LXL04_007343JCVI_TKOH_00132100.0100.0 / 73.222Complex
TkA03G161420LXL04_007349JCVI_TKOH_0013297.7100.0 / 100.0Strict
TkA03G162020LXL04_007353JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G162080LXL04_007354JCVI_TKOH_0013299.296.055 / 86.042Strict
TkA03G162220LXL04_007357JCVI_TKOH_0013294.6100.0 / 97.146Probable
TkA03G162230LXL04_007358JCVI_TKOH_0013299.199.148 / 95.355Complex
TkA03G162280LXL04_007358JCVI_TKOH_0013279.697.714 / 96.995Complex
TkA03G162310LXL04_007363JCVI_TKOH_0013293.281.667 / 48.675Review
TkA03G162630LXL04_007380JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G163120LXL04_007384JCVI_TKOH_00132100.0100.0 / 20.259Review
TkA03G163140LXL04_007384JCVI_TKOH_0013296.6100.0 / 57.112Review
TkA03G163330LXL04_007385JCVI_TKOH_0013296.898.163 / 70.968Complex
TkA03G163440LXL04_007388JCVI_TKOH_0013297.4100.0 / 100.0Complex
TkA03G164840LXL04_007402JCVI_TKOH_0013259.958.703 / 76.708Complex
TkA03G164880LXL04_007403JCVI_TKOH_0013299.6100.0 / 100.0Complex
TkA03G165560LXL04_007406JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G165800LXL04_007408JCVI_TKOH_00132100.097.531 / 69.298Review
TkA03G165850LXL04_007411JCVI_TKOH_0013291.2100.0 / 60.963Complex
TkA03G165970LXL04_007412JCVI_TKOH_0013294.2100.0 / 46.889Complex
TkA03G166050LXL04_007413JCVI_TKOH_0013299.7100.0 / 100.0Strict
TkA03G167390LXL04_007415JCVI_TKOH_00132100.0100.0 / 93.642Strict
TkA03G167950LXL04_007416JCVI_TKOH_0013295.062.992 / 100.0Review
TkA03G168830LXL04_007403JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G169010LXL04_007402JCVI_TKOH_0013289.4100.0 / 100.0Complex
TkA03G169030LXL04_007400JCVI_TKOH_00132100.0100.0 / 78.286Probable
TkA03G169070LXL04_007398JCVI_TKOH_00132100.099.528 / 57.65Review
TkA03G169090LXL04_007398JCVI_TKOH_0013291.890.741 / 26.776Complex
TkA03G169300LXL04_007395JCVI_TKOH_00132100.099.421 / 89.255Strict
TkA03G169860LXL04_007389JCVI_TKOH_0013294.9100.0 / 89.97Probable
TkA03G169940LXL04_007388JCVI_TKOH_0013297.7100.0 / 100.0Complex
TkA03G170000LXL04_007385JCVI_TKOH_0013299.299.602 / 94.877Complex
TkA03G170790LXL04_007419JCVI_TKOH_00132100.0100.0 / 63.83Review
TkA03G171480LXL04_007421JCVI_TKOH_0013282.3100.0 / 100.0Review
TkA03G172690LXL04_007426JCVI_TKOH_0013281.7100.0 / 100.0Review
TkA03G175120LXL04_007435JCVI_TKOH_0013299.7100.0 / 96.307Strict
TkA03G175150LXL04_007436JCVI_TKOH_0013298.4100.0 / 100.0Strict
TkA03G176270LXL04_007445JCVI_TKOH_0013296.0100.0 / 100.0Strict
TkA03G178090LXL04_007447JCVI_TKOH_0013297.2100.0 / 100.0Strict
TkA03G178140LXL04_007448JCVI_TKOH_0013299.099.483 / 60.44Review
TkA03G178160LXL04_007449JCVI_TKOH_0013299.5100.0 / 100.0Strict
TkA03G178260LXL04_007451JCVI_TKOH_0013299.6100.0 / 100.0Complex
TkA03G178270LXL04_007452JCVI_TKOH_0013292.8100.0 / 100.0Complex
TkA03G178320LXL04_007452JCVI_TKOH_0013295.290.11 / 68.508Complex
TkA03G178780LXL04_007456JCVI_TKOH_0013299.7100.0 / 100.0Strict
TkA03G178840LXL04_007451JCVI_TKOH_0013295.768.317 / 14.286Complex
TkA03G179250LXL04_007458JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G179260LXL04_007459JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G179360LXL04_007460JCVI_TKOH_0013294.796.795 / 84.615Probable
TkA03G179480LXL04_007463JCVI_TKOH_0013298.8100.0 / 100.0Strict
TkA03G179610LXL04_007466JCVI_TKOH_00132100.046.875 / 42.857Review
TkA03G180010LXL04_007470JCVI_TKOH_0013296.4100.0 / 93.282Strict
TkA03G180090LXL04_007473JCVI_TKOH_00132100.0100.0 / 83.171Strict
TkA03G180420LXL04_007474JCVI_TKOH_0013290.0100.0 / 17.641Complex
TkA03G180750LXL04_007476JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G181060LXL04_007477JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G181140LXL04_007478JCVI_TKOH_0013299.598.285 / 100.0Strict
TkA03G181150LXL04_007479JCVI_TKOH_0013298.4100.0 / 100.0Complex
TkA03G181290LXL04_007482JCVI_TKOH_0013283.262.59 / 36.528Complex
TkA03G183500LXL04_007486JCVI_TKOH_0013299.4100.0 / 100.0Complex
TkA03G184030LXL04_007490JCVI_TKOH_0013299.6100.0 / 100.0Complex
TkA03G184050LXL04_007493JCVI_TKOH_0013298.7100.0 / 100.0Complex
TkA03G184060LXL04_007494JCVI_TKOH_0013299.567.857 / 37.328Complex
TkA03G184160LXL04_007495JCVI_TKOH_0013298.790.854 / 100.0Strict
TkA03G184310LXL04_007498JCVI_TKOH_0013299.7100.0 / 100.0Complex
TkA03G184830LXL04_007504JCVI_TKOH_0013297.8100.0 / 100.0Complex
TkA03G186120LXL04_007516JCVI_TKOH_0013271.064.848 / 43.182Review
TkA03G186400LXL04_007520JCVI_TKOH_0013286.8100.0 / 69.732Complex
TkA03G186420LXL04_007521JCVI_TKOH_0013281.0100.0 / 100.0Complex
TkA03G186430LXL04_007517JCVI_TKOH_0013299.7100.0 / 85.488Complex
TkA03G186440LXL04_007522JCVI_TKOH_0013294.8100.0 / 100.0Complex
TkA03G186490LXL04_007520JCVI_TKOH_00132100.093.525 / 49.808Review
TkA03G186500LXL04_007521JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G186530LXL04_007517JCVI_TKOH_0013299.7100.0 / 85.488Complex
TkA03G186540LXL04_007522JCVI_TKOH_0013294.8100.0 / 100.0Complex
TkA03G186600LXL04_007519JCVI_TKOH_0013287.677.056 / 26.252Complex
TkA03G186610LXL04_007524JCVI_TKOH_00132100.098.54 / 75.419Probable
TkA03G186620LXL04_007520JCVI_TKOH_0013285.2100.0 / 69.732Complex
TkA03G186630LXL04_007525JCVI_TKOH_0013296.996.241 / 40.895Review
TkA03G186680LXL04_007529JCVI_TKOH_0013292.895.69 / 95.69Complex
TkA03G186940LXL04_007527JCVI_TKOH_0013299.598.421 / 56.495Review
TkA03G187000LXL04_007529JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G187100LXL04_007531JCVI_TKOH_0013296.652.679 / 75.641Review
TkA03G187120LXL04_007532JCVI_TKOH_0013283.498.962 / 95.563Review
TkA03G189340LXL04_007550JCVI_TKOH_0013297.8100.0 / 100.0Strict
TkA03G189570LXL04_007551JCVI_TKOH_0013299.4100.0 / 100.0Strict
TkA03G189920LXL04_007557JCVI_TKOH_00132100.0100.0 / 50.153Review
TkA03G189980LXL04_007555JCVI_TKOH_0013273.899.355 / 75.576Complex
TkA03G190280LXL04_007567JCVI_TKOH_0013293.299.545 / 99.545Complex
TkA03G190770LXL04_007569JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G190820LXL04_007570JCVI_TKOH_0013299.4100.0 / 100.0Review
TkA03G191450LXL04_007572JCVI_TKOH_0013263.693.08 / 30.017Review
TkA03G191490LXL04_007573JCVI_TKOH_0013274.545.794 / 42.029Complex
TkA03G191500LXL04_007573JCVI_TKOH_0013299.091.189 / 100.0Strict
TkA03G192030LXL04_007576JCVI_TKOH_0013295.9100.0 / 100.0Strict
TkA03G192150LXL04_007579JCVI_TKOH_0013299.6100.0 / 100.0Strict
TkA03G192680LXL04_007580JCVI_TKOH_0013298.2100.0 / 100.0Strict
TkA03G192730LXL04_007581JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G193790LXL04_007585JCVI_TKOH_0013299.893.75 / 37.475Review
TkA03G194110LXL04_007592JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G194160LXL04_007592JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G194190LXL04_007594JCVI_TKOH_0013278.484.755 / 17.366Complex
TkA03G195490LXL04_007605JCVI_TKOH_0013297.095.661 / 56.824Review
TkA03G195720LXL04_007606JCVI_TKOH_0013265.6100.0 / 100.0Review
TkA03G196880LXL04_007611JCVI_TKOH_0013294.6100.0 / 100.0Review
TkA03G197180LXL04_007613JCVI_TKOH_0013291.098.431 / 67.352Review
TkA03G197190LXL04_007614JCVI_TKOH_00132100.097.938 / 76.0Probable
TkA03G197250LXL04_007615JCVI_TKOH_0013297.291.055 / 96.139Strict
TkA03G197270LXL04_007616JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G197280LXL04_007620JCVI_TKOH_0013275.598.223 / 98.977Complex
TkA03G197420LXL04_007620JCVI_TKOH_0013250.792.683 / 37.852Complex
TkA03G197570LXL04_007620JCVI_TKOH_0013299.2100.0 / 100.0Complex
TkA03G197590LXL04_007621JCVI_TKOH_0013295.4100.0 / 100.0Strict
TkA03G197620LXL04_007622JCVI_TKOH_0013291.496.401 / 77.374Probable
TkA03G197880LXL04_007623JCVI_TKOH_0013298.5100.0 / 85.232Complex
TkA03G198030LXL04_007624JCVI_TKOH_0013283.883.571 / 41.221Review
TkA03G198280LXL04_007627JCVI_TKOH_0013298.3100.0 / 100.0Complex
TkA03G198930LXL04_007628JCVI_TKOH_0013297.599.433 / 99.885Complex
TkA03G199200LXL04_007627JCVI_TKOH_0013297.8100.0 / 100.0Complex
TkA03G199870LXL04_007628JCVI_TKOH_0013296.4100.0 / 100.0Complex
TkA03G200340LXL04_007630JCVI_TKOH_0013297.8100.0 / 100.0Strict
TkA03G200370LXL04_007633JCVI_TKOH_0013299.1100.0 / 100.0Complex
TkA03G200520LXL04_007634JCVI_TKOH_00132100.097.902 / 92.192Strict
TkA03G200530LXL04_007635JCVI_TKOH_00132100.0100.0 / 83.704Strict
TkA03G200570LXL04_007636JCVI_TKOH_00132100.093.333 / 62.222Review
TkA03G200690LXL04_007638JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G200710LXL04_007640JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G201080LXL04_007640JCVI_TKOH_0013298.2100.0 / 100.0Complex
TkA03G201100LXL04_007641JCVI_TKOH_0013298.596.032 / 98.889Strict
TkA03G201110LXL04_007642JCVI_TKOH_0013299.1100.0 / 100.0Complex
TkA03G201240LXL04_007643JCVI_TKOH_0013292.163.107 / 84.337Complex
TkA03G202550LXL04_007647JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G202720LXL04_007650JCVI_TKOH_0013299.699.63 / 59.036Review
TkA03G202730LXL04_007651JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G202890LXL04_007656JCVI_TKOH_0013284.980.663 / 73.934Complex
TkA03G202910LXL04_007661JCVI_TKOH_0013296.0100.0 / 100.0Strict
TkA03G202920LXL04_007656JCVI_TKOH_0013292.2100.0 / 59.716Complex
TkA03G203130LXL04_007663JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G203140LXL04_007664JCVI_TKOH_00132100.099.822 / 96.22Strict
TkA03G203310LXL04_007667JCVI_TKOH_00132100.0100.0 / 100.0Complex
TkA03G203410LXL04_007669JCVI_TKOH_00132100.0100.0 / 100.0Strict
TkA03G203460LXL04_007670JCVI_TKOH_00132100.0100.0 / 100.0Review
TkA03G203890LXL04_007673JCVI_TKOH_0013299.195.473 / 99.145Strict
TkA03G204300LXL04_007678JCVI_TKOH_0013295.5100.0 / 100.0Review
TkA03G204850LXL04_007681JCVI_TKOH_00132100.053.636 / 69.412Complex
TkA03G205020LXL04_007683JCVI_TKOH_0013298.999.823 / 59.894Review
TkA03G206110LXL04_007686JCVI_TKOH_0013296.1100.0 / 100.0Complex
TkA03G206130LXL04_007687JCVI_TKOH_0013299.7100.0 / 100.0Strict
TkA03G207380LXL04_007693JCVI_TKOH_0013299.6100.0 / 98.8Strict
TkA03G207800LXL04_007694JCVI_TKOH_0013298.881.908 / 45.314Review
TkA03G208740LXL04_007699JCVI_TKOH_0013292.932.319 / 45.213Review
TkA03G208910LXL04_007700JCVI_TKOH_0013298.3100.0 / 100.0Strict
TkA03G208990LXL04_007706JCVI_TKOH_0013294.1100.0 / 100.0Probable
TkA03G209000LXL04_007707JCVI_TKOH_0013299.8100.0 / 100.0Strict