Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00004
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 266
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00004

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00004 Chr01 7986373-20414648 Chr01 156617442-169107166 mixed High 200 anchors
Chr01 7986373-20414648 Chr01 156617442-169107166 JCVI_TKOH_00004 · 266 gene pairs TkA01G031050 | LXL04_005605 | 83.3% | non_reciprocal_best_hit | Complex TkA01G031060 | LXL04_005605 | 94.4% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA01G031300 | LXL04_005604 | 62.1% | multi_source_to_OH1004 | Complex TkA01G031360 | LXL04_005602 | 98.1% | sequence_supported_annotation_or_model_conflict | Review TkA01G031380 | LXL04_005600 | 89.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA01G031400 | LXL04_005604 | 97.1% | multi_source_to_OH1004 | Complex TkA01G031420 | LXL04_005597 | 90.4% | RBH_sequence_supported | Probable TkA01G031710 | LXL04_005594 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G031810 | LXL04_005592 | 99.7% | multi_source_to_OH1004 | Complex TkA01G031880 | LXL04_005591 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G031990 | LXL04_005590 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G032000 | LXL04_005589 | 99.8% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00004 Chr01:7986373-20414648 Chr01:156617442-169107166 mixed 266 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 266 · Showing 1–200 · Page 1/2

TkA01G031050 → LXL04_005605
83.3%
TkA01G031060 → LXL04_005605
94.4%
TkA01G031300 → LXL04_005604
62.1%
TkA01G031360 → LXL04_005602
98.1%
TkA01G031380 → LXL04_005600
89.0%
TkA01G031400 → LXL04_005604
97.1%
TkA01G031420 → LXL04_005597
90.4%
TkA01G031710 → LXL04_005594
100.0%
TkA01G031810 → LXL04_005592
99.7%
TkA01G031880 → LXL04_005591
100.0%
TkA01G031990 → LXL04_005590
100.0%
TkA01G032000 → LXL04_005589
99.8%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G031050LXL04_005605JCVI_TKOH_0000483.399.324 / 22.963Complex
TkA01G031060LXL04_005605JCVI_TKOH_0000494.4100.0 / 58.074Review
TkA01G031300LXL04_005604JCVI_TKOH_0000462.1100.0 / 53.846Complex
TkA01G031360LXL04_005602JCVI_TKOH_0000498.1100.0 / 42.52Review
TkA01G031380LXL04_005600JCVI_TKOH_0000489.0100.0 / 100.0Review
TkA01G031400LXL04_005604JCVI_TKOH_0000497.1100.0 / 89.744Complex
TkA01G031420LXL04_005597JCVI_TKOH_0000490.4100.0 / 90.432Probable
TkA01G031710LXL04_005594JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G031810LXL04_005592JCVI_TKOH_0000499.7100.0 / 100.0Complex
TkA01G031880LXL04_005591JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G031990LXL04_005590JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G032000LXL04_005589JCVI_TKOH_0000499.898.15 / 89.003Complex
TkA01G032020LXL04_005588JCVI_TKOH_0000499.698.053 / 67.143Review
TkA01G032120LXL04_005587JCVI_TKOH_0000495.772.543 / 27.67Complex
TkA01G032130LXL04_005587JCVI_TKOH_0000498.393.466 / 56.041Review
TkA01G032250LXL04_005584JCVI_TKOH_0000498.299.298 / 97.913Strict
TkA01G032320LXL04_005583JCVI_TKOH_0000498.3100.0 / 100.0Strict
TkA01G032330LXL04_005582JCVI_TKOH_0000499.1100.0 / 83.301Complex
TkA01G032380LXL04_005581JCVI_TKOH_0000490.4100.0 / 100.0Probable
TkA01G032770LXL04_005580JCVI_TKOH_0000498.696.73 / 98.886Strict
TkA01G032800LXL04_005570JCVI_TKOH_0000484.096.987 / 63.442Complex
TkA01G032820LXL04_005577JCVI_TKOH_0000499.194.865 / 97.5Complex
TkA01G032830LXL04_005576JCVI_TKOH_0000497.785.452 / 85.524Complex
TkA01G032840LXL04_005575JCVI_TKOH_0000493.5100.0 / 98.316Complex
TkA01G033030LXL04_005574JCVI_TKOH_0000497.7100.0 / 100.0Complex
TkA01G033070LXL04_005571JCVI_TKOH_0000485.297.006 / 33.732Complex
TkA01G033080LXL04_005570JCVI_TKOH_0000499.1100.0 / 5.719Review
TkA01G033130LXL04_005570JCVI_TKOH_0000493.546.537 / 9.086Complex
TkA01G033230LXL04_005573JCVI_TKOH_0000496.362.941 / 3.715Complex
TkA01G033250LXL04_005571JCVI_TKOH_0000485.299.42 / 14.321Complex
TkA01G033400LXL04_005571JCVI_TKOH_0000490.498.903 / 20.189Complex
TkA01G033420LXL04_005571JCVI_TKOH_0000488.197.304 / 33.176Review
TkA01G033510LXL04_005572JCVI_TKOH_0000482.197.61 / 93.924Complex
TkA01G033520LXL04_005570JCVI_TKOH_0000487.2100.0 / 57.67Complex
TkA01G033540LXL04_005569JCVI_TKOH_0000493.296.914 / 62.384Review
TkA01G033580LXL04_005568JCVI_TKOH_0000499.399.306 / 87.195Strict
TkA01G034190LXL04_005566JCVI_TKOH_00004100.0100.0 / 100.0Review
TkA01G034200LXL04_005565JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G034210LXL04_005564JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G034220LXL04_005562JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G034230LXL04_005561JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G034310LXL04_005558JCVI_TKOH_0000498.9100.0 / 100.0Review
TkA01G034320LXL04_005557JCVI_TKOH_0000499.196.203 / 34.545Review
TkA01G034330LXL04_005556JCVI_TKOH_00004100.0100.0 / 75.98Complex
TkA01G034420LXL04_005555JCVI_TKOH_0000491.582.0 / 100.0Probable
TkA01G034470LXL04_005554JCVI_TKOH_0000494.9100.0 / 100.0Review
TkA01G034480LXL04_005553JCVI_TKOH_0000476.0100.0 / 51.144Complex
TkA01G034940LXL04_005549JCVI_TKOH_0000498.091.743 / 38.023Review
TkA01G035230LXL04_005548JCVI_TKOH_00004100.092.655 / 50.0Review
TkA01G035330LXL04_005547JCVI_TKOH_0000465.894.479 / 99.153Complex
TkA01G035440LXL04_005546JCVI_TKOH_0000497.385.632 / 89.759Complex
TkA01G035820LXL04_005544JCVI_TKOH_0000499.5100.0 / 100.0Strict
TkA01G036040LXL04_005542JCVI_TKOH_0000461.1100.0 / 100.0Complex
TkA01G036050LXL04_005543JCVI_TKOH_0000493.499.077 / 75.591Complex
TkA01G036150LXL04_005540JCVI_TKOH_0000499.8100.0 / 100.0Complex
TkA01G036220LXL04_005537JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G036560LXL04_005534JCVI_TKOH_0000489.4100.0 / 73.248Complex
TkA01G036940LXL04_005532JCVI_TKOH_0000483.5100.0 / 98.578Review
TkA01G037480LXL04_005526JCVI_TKOH_00004100.0100.0 / 99.389Complex
TkA01G037580LXL04_005524JCVI_TKOH_0000498.5100.0 / 40.764Review
TkA01G037720LXL04_005519JCVI_TKOH_0000490.294.326 / 27.31Review
TkA01G037730LXL04_005519JCVI_TKOH_0000481.097.203 / 29.158Complex
TkA01G038260LXL04_005518JCVI_TKOH_0000499.4100.0 / 100.0Complex
TkA01G038350LXL04_005517JCVI_TKOH_0000491.6100.0 / 100.0Complex
TkA01G038440LXL04_005516JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G038470LXL04_005515JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G038480LXL04_005514JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G040230LXL04_005510JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G040600LXL04_005510JCVI_TKOH_0000453.398.02 / 84.211Complex
TkA01G040850LXL04_005506JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G041160LXL04_005504JCVI_TKOH_0000495.2100.0 / 100.0Strict
TkA01G041220LXL04_005503JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G041260LXL04_005502JCVI_TKOH_0000486.692.562 / 17.713Complex
TkA01G041420LXL04_005500JCVI_TKOH_0000492.8100.0 / 98.81Probable
TkA01G042080LXL04_005494JCVI_TKOH_0000498.0100.0 / 100.0Strict
TkA01G042990LXL04_005492JCVI_TKOH_0000497.397.124 / 97.199Complex
TkA01G043190LXL04_005491JCVI_TKOH_0000497.5100.0 / 100.0Strict
TkA01G043290LXL04_005484JCVI_TKOH_00004100.099.468 / 52.381Review
TkA01G043430LXL04_005483JCVI_TKOH_0000497.2100.0 / 100.0Strict
TkA01G043590LXL04_005482JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G043610LXL04_005481JCVI_TKOH_0000495.6100.0 / 100.0Complex
TkA01G043760LXL04_005480JCVI_TKOH_0000499.795.946 / 97.127Strict
TkA01G044030LXL04_005477JCVI_TKOH_0000483.095.779 / 71.495Complex
TkA01G044390LXL04_005473JCVI_TKOH_0000499.3100.0 / 28.437Review
TkA01G044460LXL04_005472JCVI_TKOH_0000465.928.671 / 20.725Complex
TkA01G044660LXL04_005472JCVI_TKOH_0000462.399.296 / 85.492Complex
TkA01G044740LXL04_005472JCVI_TKOH_0000471.126.761 / 19.171Complex
TkA01G044790LXL04_005472JCVI_TKOH_00004100.043.86 / 38.86Complex
TkA01G044900LXL04_005472JCVI_TKOH_0000479.1100.0 / 96.891Complex
TkA01G045010LXL04_005472JCVI_TKOH_0000453.1100.0 / 100.0Complex
TkA01G045160LXL04_005469JCVI_TKOH_0000499.7100.0 / 46.791Review
TkA01G048560LXL04_005453JCVI_TKOH_0000487.299.56 / 49.26Review
TkA01G048570LXL04_005453JCVI_TKOH_0000499.399.813 / 30.467Review
TkA01G048910LXL04_005452JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G048930LXL04_005450JCVI_TKOH_0000497.3100.0 / 100.0Strict
TkA01G048970LXL04_005447JCVI_TKOH_0000499.3100.0 / 48.649Review
TkA01G048980LXL04_005446JCVI_TKOH_0000499.799.11 / 99.11Strict
TkA01G049040LXL04_005445JCVI_TKOH_0000499.4100.0 / 61.597Review
TkA01G049060LXL04_005444JCVI_TKOH_00004100.097.189 / 30.44Review
TkA01G049070LXL04_005444JCVI_TKOH_0000499.6100.0 / 57.862Review
TkA01G049080LXL04_005443JCVI_TKOH_0000499.387.117 / 100.0Complex
TkA01G049230LXL04_005442JCVI_TKOH_0000499.795.082 / 100.0Review
TkA01G050130LXL04_005441JCVI_TKOH_0000499.5100.0 / 76.224Probable
TkA01G050430LXL04_005440JCVI_TKOH_0000497.979.573 / 69.786Review
TkA01G050460LXL04_005439JCVI_TKOH_0000492.9100.0 / 100.0Probable
TkA01G050510LXL04_005437JCVI_TKOH_0000499.2100.0 / 100.0Strict
TkA01G050520LXL04_005436JCVI_TKOH_00004100.062.069 / 57.754Complex
TkA01G050610LXL04_005434JCVI_TKOH_0000498.6100.0 / 79.57Complex
TkA01G050620LXL04_005432JCVI_TKOH_00004100.0100.0 / 90.526Complex
TkA01G050700LXL04_005431JCVI_TKOH_0000498.599.259 / 38.068Review
TkA01G050830LXL04_005429JCVI_TKOH_0000493.392.25 / 48.37Review
TkA01G050880LXL04_005426JCVI_TKOH_0000478.1100.0 / 87.432Complex
TkA01G053200LXL04_005420JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G053380LXL04_005416JCVI_TKOH_0000496.6100.0 / 37.931Review
TkA01G053400LXL04_005416JCVI_TKOH_0000481.589.84 / 23.372Complex
TkA01G053860LXL04_005415JCVI_TKOH_0000496.390.083 / 44.13Review
TkA01G053870LXL04_005415JCVI_TKOH_0000499.3100.0 / 54.656Review
TkA01G054200LXL04_005412JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G054210LXL04_005411JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G054230LXL04_005410JCVI_TKOH_0000499.4100.0 / 100.0Complex
TkA01G054470LXL04_005408JCVI_TKOH_0000496.299.458 / 33.004Review
TkA01G054610LXL04_005407JCVI_TKOH_0000499.181.797 / 56.908Complex
TkA01G054900LXL04_005408JCVI_TKOH_0000499.8100.0 / 100.0Complex
TkA01G055060LXL04_005407JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G055470LXL04_005406JCVI_TKOH_00004100.0100.0 / 71.508Complex
TkA01G055480LXL04_005405JCVI_TKOH_0000489.088.673 / 36.836Complex
TkA01G055490LXL04_005403JCVI_TKOH_0000478.289.595 / 38.155Complex
TkA01G055520LXL04_005403JCVI_TKOH_00004100.0100.0 / 39.651Review
TkA01G055530LXL04_005403JCVI_TKOH_0000499.199.533 / 53.117Review
TkA01G055620LXL04_005401JCVI_TKOH_0000470.381.915 / 30.038Complex
TkA01G055640LXL04_005401JCVI_TKOH_0000492.481.366 / 24.525Complex
TkA01G055650LXL04_005401JCVI_TKOH_00004100.098.817 / 31.749Review
TkA01G055790LXL04_005400JCVI_TKOH_0000497.8100.0 / 100.0Strict
TkA01G055820LXL04_005398JCVI_TKOH_0000499.2100.0 / 100.0Strict
TkA01G056110LXL04_005393JCVI_TKOH_0000499.697.297 / 100.0Strict
TkA01G056120LXL04_005394JCVI_TKOH_0000499.1100.0 / 100.0Strict
TkA01G056160LXL04_005392JCVI_TKOH_0000479.695.29 / 45.618Review
TkA01G056290LXL04_005388JCVI_TKOH_0000462.573.659 / 14.217Complex
TkA01G056490LXL04_005388JCVI_TKOH_0000497.399.613 / 48.319Review
TkA01G056500LXL04_005388JCVI_TKOH_0000493.5100.0 / 21.134Complex
TkA01G056540LXL04_005387JCVI_TKOH_0000498.8100.0 / 73.551Probable
TkA01G056550LXL04_005387JCVI_TKOH_00004100.070.44 / 20.29Complex
TkA01G057550LXL04_005383JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G057750LXL04_005382JCVI_TKOH_0000499.174.567 / 48.318Review
TkA01G057760LXL04_005382JCVI_TKOH_00004100.0100.0 / 21.3Review
TkA01G058100LXL04_005380JCVI_TKOH_0000495.3100.0 / 100.0Complex
TkA01G060100LXL04_005372JCVI_TKOH_0000487.795.93 / 65.328Review
TkA01G061040LXL04_005367JCVI_TKOH_0000481.3100.0 / 77.907Review
TkA01G061120LXL04_005366JCVI_TKOH_0000496.087.719 / 90.909Strict
TkA01G061130LXL04_005365JCVI_TKOH_0000499.6100.0 / 99.557Complex
TkA01G061330LXL04_005361JCVI_TKOH_0000498.997.238 / 91.667Strict
TkA01G061690LXL04_005360JCVI_TKOH_0000490.669.065 / 61.935Review
TkA01G061960LXL04_005355JCVI_TKOH_0000499.698.491 / 95.604Complex
TkA01G062030LXL04_005354JCVI_TKOH_0000496.985.333 / 57.919Review
TkA01G062310LXL04_005349JCVI_TKOH_0000498.3100.0 / 100.0Complex
TkA01G062970LXL04_005344JCVI_TKOH_0000498.1100.0 / 100.0Review
TkA01G063480LXL04_005341JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G063870LXL04_005340JCVI_TKOH_0000499.8100.0 / 100.0Strict
TkA01G064150LXL04_005338JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G064180LXL04_005337JCVI_TKOH_0000499.5100.0 / 100.0Strict
TkA01G064250LXL04_005336JCVI_TKOH_0000499.1100.0 / 100.0Strict
TkA01G064670LXL04_005331JCVI_TKOH_0000499.4100.0 / 100.0Complex
TkA01G064680LXL04_005331JCVI_TKOH_0000484.999.36 / 98.975Complex
TkA01G064970LXL04_005330JCVI_TKOH_0000497.5100.0 / 100.0Review
TkA01G066220LXL04_005326JCVI_TKOH_0000499.794.891 / 49.118Review
TkA01G066230LXL04_005325JCVI_TKOH_0000499.196.056 / 95.251Strict
TkA01G066280LXL04_005324JCVI_TKOH_0000498.5100.0 / 100.0Complex
TkA01G066720LXL04_005322JCVI_TKOH_0000497.591.667 / 44.322Review
TkA01G066740LXL04_005321JCVI_TKOH_0000495.8100.0 / 100.0Complex
TkA01G066750LXL04_005320JCVI_TKOH_0000499.5100.0 / 100.0Complex
TkA01G066800LXL04_005319JCVI_TKOH_0000489.356.667 / 96.951Complex
TkA01G066930LXL04_005318JCVI_TKOH_0000499.3100.0 / 91.131Complex
TkA01G067010LXL04_005317JCVI_TKOH_0000496.4100.0 / 96.31Strict
TkA01G067110LXL04_005315JCVI_TKOH_00004100.0100.0 / 100.0Strict
TkA01G067160LXL04_005314JCVI_TKOH_0000499.088.497 / 99.375Strict
TkA01G067240LXL04_005312JCVI_TKOH_0000487.9100.0 / 100.0Complex
TkA01G067440LXL04_005311JCVI_TKOH_0000498.993.426 / 21.344Review
TkA01G067790LXL04_005307JCVI_TKOH_0000499.599.739 / 87.991Complex
TkA01G067890LXL04_005302JCVI_TKOH_0000477.192.0 / 100.0Complex
TkA01G067960LXL04_005302JCVI_TKOH_0000498.5100.0 / 98.992Complex
TkA01G067980LXL04_005307JCVI_TKOH_0000467.898.489 / 90.069Complex
TkA01G067990LXL04_005307JCVI_TKOH_0000457.099.693 / 90.3Complex
TkA01G068010LXL04_005299JCVI_TKOH_0000490.787.029 / 46.421Complex
TkA01G068060LXL04_005299JCVI_TKOH_0000496.3100.0 / 100.0Strict
TkA01G068120LXL04_005298JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G068410LXL04_005297JCVI_TKOH_00004100.0100.0 / 100.0Complex
TkA01G068530LXL04_005295JCVI_TKOH_0000445.0100.0 / 99.027Complex
TkA01G068550LXL04_005291JCVI_TKOH_0000474.110.385 / 18.621Complex
TkA01G068560LXL04_005298JCVI_TKOH_0000496.499.546 / 92.857Complex
TkA01G069000LXL04_005295JCVI_TKOH_0000492.0100.0 / 100.0Complex
TkA01G069620LXL04_005293JCVI_TKOH_0000455.477.477 / 68.783Review
TkA01G069790LXL04_005287JCVI_TKOH_0000495.1100.0 / 66.397Complex
TkA01G069910LXL04_005288JCVI_TKOH_0000469.9100.0 / 100.0Review
TkA01G070250LXL04_005281JCVI_TKOH_0000498.454.783 / 22.662Complex
TkA01G070480LXL04_005279JCVI_TKOH_0000487.7100.0 / 61.804Review
TkA01G070550LXL04_005278JCVI_TKOH_0000485.0100.0 / 100.0Review
TkA01G070570LXL04_005277JCVI_TKOH_0000499.217.825 / 13.801Review
TkA01G070580LXL04_005276JCVI_TKOH_0000496.4100.0 / 74.286Complex
TkA01G070710LXL04_005275JCVI_TKOH_0000498.098.81 / 88.028Review
TkA01G070720LXL04_005274JCVI_TKOH_0000499.2100.0 / 93.052Strict