Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00243
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 287
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00243

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00243 Chr05 97670650-107054038 Chr04 129078094-138565451 mixed High 200 anchors
Chr05 97670650-107054038 Chr04 129078094-138565451 JCVI_TKOH_00243 · 287 gene pairs TkA05G393020 | LXL04_021409 | 100.0% | multi_source_to_OH1004 | Complex TkA05G393030 | LXL04_021410 | 98.2% | RBH_high_identity_coverage_synteny | Strict TkA05G393150 | LXL04_021411 | 98.8% | multi_source_to_OH1004 | Complex TkA05G393190 | LXL04_021412 | 99.6% | RBH_high_identity_coverage_synteny | Strict TkA05G394400 | LXL04_021432 | 65.4% | multi_source_to_OH1004 | Complex TkA05G394480 | LXL04_021435 | 98.8% | sequence_supported_annotation_or_model_conflict | Review TkA05G394580 | LXL04_021436 | 99.7% | multi_source_to_OH1004 | Complex TkA05G394630 | LXL04_021437 | 98.6% | non_reciprocal_best_hit | Complex TkA05G394650 | LXL04_021437 | 99.8% | sequence_supported_annotation_or_model_conflict | Review TkA05G394680 | LXL04_021438 | 99.6% | RBH_high_identity_coverage_synteny | Strict TkA05G394970 | LXL04_021439 | 100.0% | multi_source_to_OH1004 | Complex TkA05G394980 | LXL04_021440 | 100.0% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00243 Chr05:97670650-107054038 Chr04:129078094-138565451 mixed 287 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 287 · Showing 1–200 · Page 1/2

TkA05G393020 → LXL04_021409
100.0%
TkA05G393030 → LXL04_021410
98.2%
TkA05G393150 → LXL04_021411
98.8%
TkA05G393190 → LXL04_021412
99.6%
TkA05G394400 → LXL04_021432
65.4%
TkA05G394480 → LXL04_021435
98.8%
TkA05G394580 → LXL04_021436
99.7%
TkA05G394630 → LXL04_021437
98.6%
TkA05G394650 → LXL04_021437
99.8%
TkA05G394680 → LXL04_021438
99.6%
TkA05G394970 → LXL04_021439
100.0%
TkA05G394980 → LXL04_021440
100.0%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA05G393020LXL04_021409JCVI_TKOH_00243100.099.582 / 98.96Complex
TkA05G393030LXL04_021410JCVI_TKOH_0024398.2100.0 / 97.232Strict
TkA05G393150LXL04_021411JCVI_TKOH_0024398.885.361 / 100.0Complex
TkA05G393190LXL04_021412JCVI_TKOH_0024399.6100.0 / 100.0Strict
TkA05G394400LXL04_021432JCVI_TKOH_0024365.499.621 / 79.108Complex
TkA05G394480LXL04_021435JCVI_TKOH_0024398.8100.0 / 35.549Review
TkA05G394580LXL04_021436JCVI_TKOH_0024399.7100.0 / 100.0Complex
TkA05G394630LXL04_021437JCVI_TKOH_0024398.680.734 / 42.822Complex
TkA05G394650LXL04_021437JCVI_TKOH_0024399.8100.0 / 51.095Review
TkA05G394680LXL04_021438JCVI_TKOH_0024399.6100.0 / 99.006Strict
TkA05G394970LXL04_021439JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G394980LXL04_021440JCVI_TKOH_00243100.094.574 / 84.722Strict
TkA05G395060LXL04_021441JCVI_TKOH_0024397.6100.0 / 100.0Strict
TkA05G395830LXL04_021445JCVI_TKOH_0024399.898.71 / 92.727Complex
TkA05G397000LXL04_021454JCVI_TKOH_0024399.7100.0 / 100.0Strict
TkA05G397010LXL04_021455JCVI_TKOH_00243100.084.856 / 92.068Complex
TkA05G397480LXL04_021457JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G397690LXL04_021458JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G397900LXL04_021459JCVI_TKOH_0024397.3100.0 / 100.0Strict
TkA05G398080LXL04_021461JCVI_TKOH_0024389.4100.0 / 69.399Review
TkA05G398100LXL04_021462JCVI_TKOH_0024396.379.412 / 100.0Complex
TkA05G398130LXL04_021464JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G398140LXL04_021466JCVI_TKOH_0024397.7100.0 / 100.0Strict
TkA05G398170LXL04_021467JCVI_TKOH_0024399.898.507 / 98.507Strict
TkA05G398610LXL04_021471JCVI_TKOH_0024388.8100.0 / 100.0Review
TkA05G398690LXL04_021472JCVI_TKOH_0024398.4100.0 / 100.0Strict
TkA05G398730LXL04_021473JCVI_TKOH_0024397.1100.0 / 48.412Review
TkA05G398740LXL04_021474JCVI_TKOH_0024399.8100.0 / 100.0Complex
TkA05G399160LXL04_021483JCVI_TKOH_0024399.2100.0 / 63.212Review
TkA05G399220LXL04_021484JCVI_TKOH_0024394.291.842 / 69.808Review
TkA05G399250LXL04_021486JCVI_TKOH_0024398.599.785 / 71.002Complex
TkA05G399260LXL04_021487JCVI_TKOH_0024399.598.353 / 95.216Complex
TkA05G399270LXL04_021488JCVI_TKOH_0024395.5100.0 / 100.0Review
TkA05G399280LXL04_021489JCVI_TKOH_0024397.6100.0 / 100.0Complex
TkA05G399290LXL04_021490JCVI_TKOH_00243100.0100.0 / 100.0Review
TkA05G399360LXL04_021491JCVI_TKOH_00243100.0100.0 / 100.0Review
TkA05G399390LXL04_021493JCVI_TKOH_0024392.1100.0 / 100.0Complex
TkA05G399810LXL04_021486JCVI_TKOH_0024399.8100.0 / 100.0Complex
TkA05G399820LXL04_021487JCVI_TKOH_0024399.398.353 / 95.216Complex
TkA05G399860LXL04_021488JCVI_TKOH_0024397.2100.0 / 100.0Review
TkA05G399890LXL04_021489JCVI_TKOH_0024397.4100.0 / 100.0Complex
TkA05G399910LXL04_021490JCVI_TKOH_0024399.8100.0 / 100.0Complex
TkA05G399980LXL04_021491JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G400010LXL04_021493JCVI_TKOH_0024392.1100.0 / 100.0Complex
TkA05G400410LXL04_021494JCVI_TKOH_00243100.0100.0 / 20.736Review
TkA05G400510LXL04_021496JCVI_TKOH_0024398.086.842 / 16.981Review
TkA05G400630LXL04_021497JCVI_TKOH_0024356.025.26 / 36.742Complex
TkA05G400650LXL04_021497JCVI_TKOH_0024394.1100.0 / 100.0Probable
TkA05G400840LXL04_021498JCVI_TKOH_0024376.294.702 / 19.346Complex
TkA05G400860LXL04_021499JCVI_TKOH_0024399.0100.0 / 100.0Complex
TkA05G400870LXL04_021500JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G400880LXL04_021501JCVI_TKOH_0024399.4100.0 / 80.815Strict
TkA05G400890LXL04_021502JCVI_TKOH_0024397.374.206 / 68.0Review
TkA05G400920LXL04_021509JCVI_TKOH_0024358.199.805 / 99.472Complex
TkA05G401120LXL04_021509JCVI_TKOH_0024370.599.177 / 65.757Complex
TkA05G401130LXL04_021509JCVI_TKOH_0024391.2100.0 / 100.0Complex
TkA05G401150LXL04_021511JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G401180LXL04_021512JCVI_TKOH_0024399.4100.0 / 100.0Complex
TkA05G401210LXL04_021513JCVI_TKOH_0024397.0100.0 / 97.586Strict
TkA05G401350LXL04_021514JCVI_TKOH_0024383.786.458 / 81.259Review
TkA05G401360LXL04_021515JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G401380LXL04_021517JCVI_TKOH_0024375.6100.0 / 100.0Review
TkA05G401600LXL04_021522JCVI_TKOH_0024398.3100.0 / 87.222Strict
TkA05G401610LXL04_021523JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G401620LXL04_021524JCVI_TKOH_0024399.1100.0 / 100.0Strict
TkA05G401630LXL04_021525JCVI_TKOH_0024398.9100.0 / 100.0Complex
TkA05G401660LXL04_021528JCVI_TKOH_00243100.090.735 / 88.199Strict
TkA05G401700LXL04_021526JCVI_TKOH_0024372.294.37 / 91.192Complex
TkA05G401940LXL04_021529JCVI_TKOH_0024386.594.534 / 79.286Complex
TkA05G402050LXL04_021530JCVI_TKOH_0024398.893.889 / 27.614Review
TkA05G402120LXL04_021532JCVI_TKOH_0024397.599.792 / 87.035Strict
TkA05G402370LXL04_021533JCVI_TKOH_0024390.997.059 / 44.595Complex
TkA05G402640LXL04_021534JCVI_TKOH_0024389.9100.0 / 100.0Review
TkA05G403410LXL04_021536JCVI_TKOH_0024369.992.401 / 25.664Complex
TkA05G403420LXL04_021536JCVI_TKOH_0024396.9100.0 / 31.728Review
TkA05G403430LXL04_021536JCVI_TKOH_0024399.3100.0 / 45.598Review
TkA05G403620LXL04_021538JCVI_TKOH_0024399.797.885 / 98.182Review
TkA05G403770LXL04_021539JCVI_TKOH_0024399.6100.0 / 100.0Strict
TkA05G403800LXL04_021540JCVI_TKOH_0024398.5100.0 / 100.0Strict
TkA05G403970LXL04_021542JCVI_TKOH_00243100.090.244 / 70.701Complex
TkA05G404300LXL04_021541JCVI_TKOH_00243100.036.842 / 59.829Review
TkA05G404330LXL04_021542JCVI_TKOH_0024398.196.914 / 100.0Complex
TkA05G405020LXL04_021544JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G405170LXL04_021545JCVI_TKOH_0024397.899.702 / 62.466Complex
TkA05G405200LXL04_021546JCVI_TKOH_0024399.196.522 / 98.214Complex
TkA05G405210LXL04_021547JCVI_TKOH_0024394.7100.0 / 100.0Probable
TkA05G405320LXL04_021551JCVI_TKOH_0024396.191.606 / 97.727Strict
TkA05G405370LXL04_021552JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G405380LXL04_021553JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G405490LXL04_021554JCVI_TKOH_0024398.9100.0 / 100.0Complex
TkA05G405550LXL04_021555JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G405700LXL04_021556JCVI_TKOH_0024399.789.216 / 100.0Complex
TkA05G405710LXL04_021557JCVI_TKOH_00243100.092.756 / 100.0Strict
TkA05G405870LXL04_021559JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G405910LXL04_021560JCVI_TKOH_00243100.049.398 / 100.0Review
TkA05G405960LXL04_021561JCVI_TKOH_0024393.992.453 / 54.438Review
TkA05G406020LXL04_021562JCVI_TKOH_0024387.292.814 / 39.269Complex
TkA05G406030LXL04_021563JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G406930LXL04_021564JCVI_TKOH_0024399.8100.0 / 100.0Strict
TkA05G406950LXL04_021566JCVI_TKOH_0024396.158.108 / 53.975Review
TkA05G406980LXL04_021567JCVI_TKOH_0024396.7100.0 / 100.0Strict
TkA05G407000LXL04_021568JCVI_TKOH_0024399.7100.0 / 100.0Complex
TkA05G407010LXL04_021569JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G407020LXL04_021570JCVI_TKOH_0024399.799.443 / 54.671Review
TkA05G407200LXL04_021572JCVI_TKOH_0024387.9100.0 / 87.643Review
TkA05G407490LXL04_021573JCVI_TKOH_0024391.6100.0 / 100.0Probable
TkA05G407500LXL04_021574JCVI_TKOH_00243100.0100.0 / 51.093Review
TkA05G407520LXL04_021575JCVI_TKOH_0024399.7100.0 / 100.0Strict
TkA05G407560LXL04_021576JCVI_TKOH_0024397.399.465 / 81.223Complex
TkA05G408150LXL04_021579JCVI_TKOH_0024398.599.865 / 89.372Strict
TkA05G408170LXL04_021581JCVI_TKOH_0024399.6100.0 / 100.0Strict
TkA05G408180LXL04_021582JCVI_TKOH_0024397.8100.0 / 97.624Complex
TkA05G408210LXL04_021583JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G408270LXL04_021585JCVI_TKOH_0024396.0100.0 / 100.0Strict
TkA05G408300LXL04_021586JCVI_TKOH_0024395.091.371 / 44.444Review
TkA05G408310LXL04_021586JCVI_TKOH_0024394.869.948 / 32.099Complex
TkA05G408450LXL04_021588JCVI_TKOH_0024398.697.263 / 72.182Probable
TkA05G408520LXL04_021589JCVI_TKOH_0024399.7100.0 / 100.0Complex
TkA05G409060LXL04_021595JCVI_TKOH_00243100.097.778 / 59.661Review
TkA05G409100LXL04_021596JCVI_TKOH_0024399.8100.0 / 100.0Strict
TkA05G409740LXL04_021597JCVI_TKOH_0024398.2100.0 / 100.0Strict
TkA05G409830LXL04_021599JCVI_TKOH_0024399.2100.0 / 100.0Strict
TkA05G409840LXL04_021600JCVI_TKOH_0024399.099.839 / 88.244Complex
TkA05G410390LXL04_021605JCVI_TKOH_0024392.693.13 / 91.729Probable
TkA05G410730LXL04_021610JCVI_TKOH_0024396.1100.0 / 100.0Complex
TkA05G410740LXL04_021611JCVI_TKOH_0024398.9100.0 / 100.0Strict
TkA05G410840LXL04_021612JCVI_TKOH_0024399.6100.0 / 100.0Strict
TkA05G411300LXL04_021613JCVI_TKOH_0024394.7100.0 / 19.498Complex
TkA05G411370LXL04_021615JCVI_TKOH_0024397.0100.0 / 100.0Review
TkA05G411400LXL04_021616JCVI_TKOH_0024399.7100.0 / 100.0Complex
TkA05G411670LXL04_021618JCVI_TKOH_0024399.3100.0 / 55.682Review
TkA05G411830LXL04_021619JCVI_TKOH_0024393.6100.0 / 100.0Probable
TkA05G411870LXL04_021620JCVI_TKOH_0024393.8100.0 / 86.647Probable
TkA05G412140LXL04_021621JCVI_TKOH_0024399.1100.0 / 100.0Strict
TkA05G412160LXL04_021622JCVI_TKOH_0024399.7100.0 / 97.854Strict
TkA05G412170LXL04_021623JCVI_TKOH_0024399.8100.0 / 100.0Strict
TkA05G412180LXL04_021624JCVI_TKOH_0024399.7100.0 / 100.0Strict
TkA05G412190LXL04_021625JCVI_TKOH_0024396.5100.0 / 100.0Strict
TkA05G412410LXL04_021628JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G412570LXL04_021630JCVI_TKOH_0024399.6100.0 / 100.0Complex
TkA05G412610LXL04_021631JCVI_TKOH_0024399.8100.0 / 100.0Complex
TkA05G412620LXL04_021632JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G412730LXL04_021633JCVI_TKOH_0024399.6100.0 / 99.128Strict
TkA05G412740LXL04_021634JCVI_TKOH_0024399.2100.0 / 100.0Review
TkA05G412820LXL04_021636JCVI_TKOH_0024392.273.885 / 22.153Complex
TkA05G413590LXL04_021645JCVI_TKOH_0024398.386.139 / 26.905Review
TkA05G413600LXL04_021645JCVI_TKOH_00243100.072.0 / 11.198Complex
TkA05G413680LXL04_021648JCVI_TKOH_0024399.7100.0 / 100.0Complex
TkA05G413970LXL04_021651JCVI_TKOH_0024392.738.318 / 7.765Review
TkA05G413980LXL04_021652JCVI_TKOH_0024394.3100.0 / 49.646Review
TkA05G413990LXL04_021654JCVI_TKOH_0024399.193.617 / 69.401Complex
TkA05G414000LXL04_021655JCVI_TKOH_0024393.399.408 / 78.603Complex
TkA05G414340LXL04_021657JCVI_TKOH_0024345.5100.0 / 100.0Review
TkA05G414350LXL04_021658JCVI_TKOH_0024399.6100.0 / 92.119Strict
TkA05G414380LXL04_021659JCVI_TKOH_00243100.078.736 / 100.0Review
TkA05G414440LXL04_021660JCVI_TKOH_00243100.089.873 / 100.0Strict
TkA05G414540LXL04_021661JCVI_TKOH_0024399.3100.0 / 100.0Review
TkA05G414590LXL04_021662JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G414600LXL04_021663JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G415100LXL04_021664JCVI_TKOH_0024399.099.814 / 99.815Strict
TkA05G415120LXL04_021666JCVI_TKOH_00243100.0100.0 / 100.0Complex
TkA05G415130LXL04_021668JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G415210LXL04_021669JCVI_TKOH_0024399.499.707 / 42.184Review
TkA05G415230LXL04_021670JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G415840LXL04_021686JCVI_TKOH_0024399.292.248 / 77.44Complex
TkA05G415920LXL04_021687JCVI_TKOH_0024370.8100.0 / 81.951Complex
TkA05G416040LXL04_021688JCVI_TKOH_0024399.6100.0 / 64.55Review
TkA05G416050LXL04_021689JCVI_TKOH_00243100.0100.0 / 84.571Strict
TkA05G416060LXL04_021690JCVI_TKOH_0024399.8100.0 / 100.0Strict
TkA05G416430LXL04_021692JCVI_TKOH_00243100.095.683 / 84.177Review
TkA05G416440LXL04_021698JCVI_TKOH_0024396.4100.0 / 57.331Review
TkA05G416450LXL04_021699JCVI_TKOH_0024399.3100.0 / 100.0Strict
TkA05G416510LXL04_021700JCVI_TKOH_0024399.6100.0 / 100.0Strict
TkA05G416530LXL04_021702JCVI_TKOH_0024398.5100.0 / 100.0Strict
TkA05G416540LXL04_021703JCVI_TKOH_00243100.094.531 / 22.491Review
TkA05G416550LXL04_021703JCVI_TKOH_00243100.095.625 / 28.439Review
TkA05G416590LXL04_021703JCVI_TKOH_00243100.0100.0 / 29.554Review
TkA05G416600LXL04_021704JCVI_TKOH_0024398.2100.0 / 96.463Strict
TkA05G416620LXL04_021705JCVI_TKOH_0024396.581.953 / 68.276Review
TkA05G416630LXL04_021706JCVI_TKOH_0024392.688.35 / 49.524Review
TkA05G416660LXL04_021708JCVI_TKOH_0024398.5100.0 / 100.0Strict
TkA05G416720LXL04_021710JCVI_TKOH_0024367.986.689 / 42.705Review
TkA05G416750LXL04_021711JCVI_TKOH_0024387.495.261 / 71.875Review
TkA05G416830LXL04_021713JCVI_TKOH_0024392.1100.0 / 100.0Probable
TkA05G417140LXL04_021714JCVI_TKOH_00243100.070.558 / 40.173Complex
TkA05G417150LXL04_021714JCVI_TKOH_0024399.0100.0 / 29.769Review
TkA05G417270LXL04_021715JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G417310LXL04_021716JCVI_TKOH_0024394.999.86 / 99.021Probable
TkA05G417320LXL04_021717JCVI_TKOH_0024396.5100.0 / 69.362Complex
TkA05G417410LXL04_021721JCVI_TKOH_0024396.8100.0 / 100.0Strict
TkA05G417420LXL04_021722JCVI_TKOH_0024390.9100.0 / 100.0Complex
TkA05G417520LXL04_021725JCVI_TKOH_0024387.2100.0 / 100.0Review
TkA05G417560LXL04_021726JCVI_TKOH_0024394.6100.0 / 47.478Complex
TkA05G417570LXL04_021726JCVI_TKOH_00243100.0100.0 / 47.774Review
TkA05G417590LXL04_021728JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G417600LXL04_021729JCVI_TKOH_00243100.0100.0 / 87.736Complex
TkA05G417610LXL04_021730JCVI_TKOH_0024389.1100.0 / 100.0Review
TkA05G417620LXL04_021732JCVI_TKOH_00243100.0100.0 / 100.0Strict
TkA05G417740LXL04_021734JCVI_TKOH_0024399.394.04 / 56.8Review
TkA05G417820LXL04_021737JCVI_TKOH_0024397.4100.0 / 100.0Strict