Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1217 bp · LXL04_021556|LXL04_021556|OH1004|cDNA
ATGCCGGCCGTACGTATACGGTTGGTGAATCTAACGTGTATATATAGAATGCTTCATCCATACTCACTCTCACACCAAAACGAACACAAACCCAcaatacacacacacacttcTCCGACGAAATGGGGTCAACCACAGCACCTGCAAGTTTTCCGGCGGAATCAAACCACGACGACGAAGCTTTCCTCTTCGCCATGAACCTAGCAACAGCATCCGTCTTACCAATGGTCGTGAAAACCGCCATCGAGCTTAATCTTCTC...
1095 bp · LXL04_021556|LXL04_021556|OH1004|CDS
ATGGGGTCAACCACAGCACCTGCAAGTTTTCCGGCGGAATCAAACCACGACGACGAAGCTTTCCTCTTCGCCATGAACCTAGCAACAGCATCCGTCTTACCAATGGTCGTGAAAACCGCCATCGAGCTTAATCTTCTCGAGATCATATCCAAATCCGGCACCGGAGCTTCACTCTCATCTTCCGACCTCGCTTCCCAGATTCCCAACACCAACCCCGAAGCTCCGGCGATGCTCGAAAGAATCTGCAGTCTTCTCGCCAG...
Protein
Download Protein FASTA364 aa · LXL04_021556|LXL04_021556|OH1004|PROTEIN
MGSTTAPASFPAESNHDDEAFLFAMNLATASVLPMVVKTAIELNLLEIISKSGTGASLSSSDLASQIPNTNPEAPAMLERICSLLASHSVLTCTLKETDDGGVERLYGLAPVCKFLTKNENGVSLAPLLLMNQDKILMESWYHLKDAVVDGGIPFNKAYGMSAFEYHGKDQRFNKVFNSGMFNHSTMTMEKIVDLYDGFNGVKTLVDVGGGIGASLNKIIAKHSSVKGVNFDLPHVIEDAASFPGIEHVGGDMFESVPKG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_021556 |
|---|---|
| TK1151 ID | TkA05G405700 |
| OH-1004 ID | LXL04_021556 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 89.216 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_021556 |
|---|---|
| Location | Chr04:132308953-132310756 (+) |
| Description | Similar to Caffeic acid 3-O-methyltransferase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009805 coumarin biosynthetic process Biological Process GO:0009809 lignin biosynthetic process Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0032259 methylation Biological Process GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function GO:0046983 protein dimerization activity Molecular Function GO:0047763 caffeate O-methyltransferase activity Molecular Function |
| KEGG gene cross-reference | cann:107862991 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08100.19Dimerisation25-118 aaPF00891.25Methyltransf_2141-346 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_021556 | PF08100.19 | Dimerisation | 25 | 118 | 4.8e-17 | 62.4 |
| LXL04_021556 | PF00891.25 | Methyltransf_2 | 141 | 346 | 1.4e-73 | 247.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.