Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00240

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 113

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00240

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00240 Chr05 71553682-82903129 Chr04 104894729-116235532 mixed High 113 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00240`	Chr05:71553682-82903129	Chr04:104894729-116235532	mixed	113	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 113 · Showing 1–113 · Page 1/1

Download All Anchors TSV

TkA05G289600 → LXL04_020693

98.4%

TkA05G290140 → LXL04_020686

98.8%

TkA05G290410 → LXL04_020685

94.7%

TkA05G291160 → LXL04_020685

99.8%

TkA05G291170 → LXL04_020686

98.3%

TkA05G291660 → LXL04_020693

99.0%

TkA05G296680 → LXL04_020708

99.4%

TkA05G296960 → LXL04_020709

100.0%

TkA05G297600 → LXL04_020710

99.6%

TkA05G297780 → LXL04_020711

100.0%

TkA05G297790 → LXL04_020712

93.5%

TkA05G297800 → LXL04_020713

91.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA05G289600`	`LXL04_020693`	`JCVI_TKOH_00240`	98.4	100.0 / 100.0	Complex
`TkA05G290140`	`LXL04_020686`	`JCVI_TKOH_00240`	98.8	91.549 / 69.002	Complex
`TkA05G290410`	`LXL04_020685`	`JCVI_TKOH_00240`	94.7	100.0 / 100.0	Complex
`TkA05G291160`	`LXL04_020685`	`JCVI_TKOH_00240`	99.8	100.0 / 100.0	Review
`TkA05G291170`	`LXL04_020686`	`JCVI_TKOH_00240`	98.3	93.023 / 76.433	Complex
`TkA05G291660`	`LXL04_020693`	`JCVI_TKOH_00240`	99.0	100.0 / 100.0	Complex
`TkA05G296680`	`LXL04_020708`	`JCVI_TKOH_00240`	99.4	100.0 / 100.0	Strict
`TkA05G296960`	`LXL04_020709`	`JCVI_TKOH_00240`	100.0	97.887 / 49.291	Review
`TkA05G297600`	`LXL04_020710`	`JCVI_TKOH_00240`	99.6	100.0 / 100.0	Strict
`TkA05G297780`	`LXL04_020711`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex
`TkA05G297790`	`LXL04_020712`	`JCVI_TKOH_00240`	93.5	100.0 / 100.0	Probable
`TkA05G297800`	`LXL04_020713`	`JCVI_TKOH_00240`	91.4	100.0 / 48.333	Review
`TkA05G298180`	`LXL04_020715`	`JCVI_TKOH_00240`	83.5	20.412 / 100.0	Review
`TkA05G298310`	`LXL04_020715`	`JCVI_TKOH_00240`	90.6	100.0 / 32.215	Complex
`TkA05G298610`	`LXL04_020720`	`JCVI_TKOH_00240`	98.0	100.0 / 61.111	Complex
`TkA05G298950`	`LXL04_020725`	`JCVI_TKOH_00240`	99.3	98.444 / 81.734	Strict
`TkA05G298960`	`LXL04_020727`	`JCVI_TKOH_00240`	89.9	99.533 / 94.007	Review
`TkA05G299260`	`LXL04_020728`	`JCVI_TKOH_00240`	86.3	100.0 / 100.0	Review
`TkA05G299270`	`LXL04_020729`	`JCVI_TKOH_00240`	98.6	90.506 / 84.118	Strict
`TkA05G299670`	`LXL04_020731`	`JCVI_TKOH_00240`	99.1	100.0 / 100.0	Review
`TkA05G299800`	`LXL04_020733`	`JCVI_TKOH_00240`	98.5	90.644 / 100.0	Strict
`TkA05G300010`	`LXL04_020735`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Strict
`TkA05G300040`	`LXL04_020738`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Strict
`TkA05G300050`	`LXL04_020739`	`JCVI_TKOH_00240`	77.7	100.0 / 100.0	Review
`TkA05G300140`	`LXL04_020740`	`JCVI_TKOH_00240`	91.6	98.352 / 100.0	Complex
`TkA05G300680`	`LXL04_020741`	`JCVI_TKOH_00240`	94.0	99.738 / 78.556	Complex
`TkA05G300830`	`LXL04_020744`	`JCVI_TKOH_00240`	92.6	100.0 / 100.0	Probable
`TkA05G300940`	`LXL04_020745`	`JCVI_TKOH_00240`	94.2	99.593 / 71.409	Probable
`TkA05G300950`	`LXL04_020746`	`JCVI_TKOH_00240`	100.0	100.0 / 85.922	Strict
`TkA05G301990`	`LXL04_020748`	`JCVI_TKOH_00240`	92.0	97.139 / 93.286	Probable
`TkA05G302020`	`LXL04_020749`	`JCVI_TKOH_00240`	92.8	99.413 / 76.596	Probable
`TkA05G302030`	`LXL04_020750`	`JCVI_TKOH_00240`	99.8	93.607 / 71.057	Probable
`TkA05G302050`	`LXL04_020751`	`JCVI_TKOH_00240`	97.7	100.0 / 100.0	Strict
`TkA05G302320`	`LXL04_020752`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Review
`TkA05G303310`	`LXL04_020762`	`JCVI_TKOH_00240`	99.0	100.0 / 100.0	Strict
`TkA05G304290`	`LXL04_020774`	`JCVI_TKOH_00240`	93.3	100.0 / 100.0	Probable
`TkA05G305620`	`LXL04_020778`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex
`TkA05G305870`	`LXL04_020779`	`JCVI_TKOH_00240`	84.4	100.0 / 100.0	Complex
`TkA05G305880`	`LXL04_020781`	`JCVI_TKOH_00240`	100.0	96.814 / 93.824	Review
`TkA05G307470`	`LXL04_020786`	`JCVI_TKOH_00240`	96.7	58.738 / 32.44	Complex
`TkA05G307560`	`LXL04_020786`	`JCVI_TKOH_00240`	98.9	100.0 / 100.0	Complex
`TkA05G307730`	`LXL04_020793`	`JCVI_TKOH_00240`	98.9	100.0 / 100.0	Strict
`TkA05G308420`	`LXL04_020809`	`JCVI_TKOH_00240`	98.9	100.0 / 100.0	Complex
`TkA05G309010`	`LXL04_020802`	`JCVI_TKOH_00240`	95.5	100.0 / 97.5	Strict
`TkA05G309490`	`LXL04_020794`	`JCVI_TKOH_00240`	99.4	99.444 / 79.204	Complex
`TkA05G309510`	`LXL04_020798`	`JCVI_TKOH_00240`	99.0	51.02 / 26.385	Complex
`TkA05G309820`	`LXL04_020794`	`JCVI_TKOH_00240`	99.0	98.558 / 90.708	Complex
`TkA05G310260`	`LXL04_020779`	`JCVI_TKOH_00240`	94.0	100.0 / 98.049	Complex
`TkA05G310290`	`LXL04_020781`	`JCVI_TKOH_00240`	99.5	96.814 / 93.824	Review
`TkA05G311010`	`LXL04_020786`	`JCVI_TKOH_00240`	99.2	100.0 / 100.0	Complex
`TkA05G311600`	`LXL04_020807`	`JCVI_TKOH_00240`	98.2	81.618 / 77.622	Probable
`TkA05G311750`	`LXL04_020809`	`JCVI_TKOH_00240`	96.2	100.0 / 100.0	Complex
`TkA05G312570`	`LXL04_020811`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Strict
`TkA05G312730`	`LXL04_020812`	`JCVI_TKOH_00240`	94.8	100.0 / 93.209	Probable
`TkA05G312960`	`LXL04_020815`	`JCVI_TKOH_00240`	87.2	100.0 / 100.0	Review
`TkA05G313380`	`LXL04_020820`	`JCVI_TKOH_00240`	96.7	100.0 / 57.512	Review
`TkA05G314120`	`LXL04_020822`	`JCVI_TKOH_00240`	99.6	99.909 / 88.71	Complex
`TkA05G314140`	`LXL04_020822`	`JCVI_TKOH_00240`	99.6	99.909 / 88.71	Complex
`TkA05G314320`	`LXL04_020824`	`JCVI_TKOH_00240`	99.4	100.0 / 100.0	Review
`TkA05G314440`	`LXL04_020825`	`JCVI_TKOH_00240`	99.8	100.0 / 100.0	Complex
`TkA05G314700`	`LXL04_020827`	`JCVI_TKOH_00240`	97.8	100.0 / 94.889	Strict
`TkA05G314710`	`LXL04_020829`	`JCVI_TKOH_00240`	98.9	100.0 / 100.0	Complex
`TkA05G314850`	`LXL04_020831`	`JCVI_TKOH_00240`	60.9	99.65 / 99.758	Complex
`TkA05G314980`	`LXL04_020834`	`JCVI_TKOH_00240`	100.0	100.0 / 54.217	Review
`TkA05G315000`	`LXL04_020843`	`JCVI_TKOH_00240`	94.7	100.0 / 41.728	Complex
`TkA05G315130`	`LXL04_020838`	`JCVI_TKOH_00240`	99.2	100.0 / 89.189	Strict
`TkA05G315220`	`LXL04_020841`	`JCVI_TKOH_00240`	99.4	100.0 / 66.122	Complex
`TkA05G315430`	`LXL04_020843`	`JCVI_TKOH_00240`	97.8	100.0 / 88.642	Strict
`TkA05G315960`	`LXL04_020846`	`JCVI_TKOH_00240`	99.7	100.0 / 48.818	Review
`TkA05G316510`	`LXL04_020848`	`JCVI_TKOH_00240`	99.4	100.0 / 97.892	Complex
`TkA05G317590`	`LXL04_020850`	`JCVI_TKOH_00240`	98.6	100.0 / 100.0	Complex
`TkA05G317610`	`LXL04_020850`	`JCVI_TKOH_00240`	78.5	100.0 / 100.0	Complex
`TkA05G318340`	`LXL04_020855`	`JCVI_TKOH_00240`	99.1	100.0 / 100.0	Strict
`TkA05G318650`	`LXL04_020857`	`JCVI_TKOH_00240`	97.7	100.0 / 100.0	Strict
`TkA05G318890`	`LXL04_020860`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex
`TkA05G318940`	`LXL04_020861`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Review
`TkA05G319060`	`LXL04_020863`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex
`TkA05G322710`	`LXL04_020876`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex
`TkA05G323370`	`LXL04_020877`	`JCVI_TKOH_00240`	93.7	100.0 / 99.097	Probable
`TkA05G323550`	`LXL04_020878`	`JCVI_TKOH_00240`	99.8	99.816 / 99.816	Complex
`TkA05G323600`	`LXL04_020879`	`JCVI_TKOH_00240`	99.5	100.0 / 100.0	Complex
`TkA05G323610`	`LXL04_020880`	`JCVI_TKOH_00240`	83.5	100.0 / 100.0	Complex
`TkA05G324060`	`LXL04_020878`	`JCVI_TKOH_00240`	99.4	99.816 / 99.816	Complex
`TkA05G324750`	`LXL04_020879`	`JCVI_TKOH_00240`	97.5	100.0 / 100.0	Complex
`TkA05G324770`	`LXL04_020880`	`JCVI_TKOH_00240`	84.6	100.0 / 100.0	Complex
`TkA05G325490`	`LXL04_020882`	`JCVI_TKOH_00240`	93.2	100.0 / 100.0	Complex
`TkA05G325720`	`LXL04_020883`	`JCVI_TKOH_00240`	63.9	100.0 / 100.0	Complex
`TkA05G325770`	`LXL04_020884`	`JCVI_TKOH_00240`	93.5	100.0 / 55.703	Complex
`TkA05G326300`	`LXL04_020887`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Strict
`TkA05G326760`	`LXL04_020890`	`JCVI_TKOH_00240`	100.0	100.0 / 96.685	Review
`TkA05G326860`	`LXL04_020892`	`JCVI_TKOH_00240`	99.6	100.0 / 48.205	Review
`TkA05G327050`	`LXL04_020894`	`JCVI_TKOH_00240`	99.7	100.0 / 100.0	Complex
`TkA05G329470`	`LXL04_020903`	`JCVI_TKOH_00240`	98.2	52.866 / 16.355	Complex
`TkA05G331440`	`LXL04_020906`	`JCVI_TKOH_00240`	99.1	100.0 / 100.0	Strict
`TkA05G331970`	`LXL04_020908`	`JCVI_TKOH_00240`	72.7	37.692 / 96.117	Review
`TkA05G331980`	`LXL04_020909`	`JCVI_TKOH_00240`	89.8	100.0 / 72.571	Review
`TkA05G332600`	`LXL04_020910`	`JCVI_TKOH_00240`	96.0	100.0 / 100.0	Strict
`TkA05G332910`	`LXL04_020914`	`JCVI_TKOH_00240`	96.7	97.422 / 59.815	Review
`TkA05G333000`	`LXL04_020917`	`JCVI_TKOH_00240`	95.0	86.022 / 80.987	Strict
`TkA05G333090`	`LXL04_020918`	`JCVI_TKOH_00240`	99.6	100.0 / 100.0	Strict
`TkA05G333180`	`LXL04_020919`	`JCVI_TKOH_00240`	92.7	100.0 / 100.0	Review
`TkA05G333510`	`LXL04_020923`	`JCVI_TKOH_00240`	74.5	70.0 / 86.096	Complex
`TkA05G333690`	`LXL04_020922`	`JCVI_TKOH_00240`	99.6	92.164 / 68.994	Complex
`TkA05G333920`	`LXL04_020951`	`JCVI_TKOH_00240`	97.1	98.945 / 66.132	Complex
`TkA05G333950`	`LXL04_020949`	`JCVI_TKOH_00240`	99.2	99.742 / 50.13	Review
`TkA05G333970`	`LXL04_020948`	`JCVI_TKOH_00240`	94.1	100.0 / 100.0	Probable
`TkA05G334270`	`LXL04_020947`	`JCVI_TKOH_00240`	97.5	99.39 / 99.39	Review
`TkA05G334520`	`LXL04_020944`	`JCVI_TKOH_00240`	99.8	100.0 / 100.0	Strict
`TkA05G334570`	`LXL04_020943`	`JCVI_TKOH_00240`	92.3	100.0 / 100.0	Probable
`TkA05G334800`	`LXL04_020942`	`JCVI_TKOH_00240`	99.2	100.0 / 100.0	Complex
`TkA05G334850`	`LXL04_020941`	`JCVI_TKOH_00240`	97.8	94.578 / 100.0	Review
`TkA05G334860`	`LXL04_020940`	`JCVI_TKOH_00240`	99.7	100.0 / 100.0	Complex
`TkA05G335510`	`LXL04_020936`	`JCVI_TKOH_00240`	100.0	100.0 / 100.0	Complex