Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00097

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 58

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00097

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00097 Chr02 145800164-147650365 Chr03 10533941-12119470 mixed High 58 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00097`	Chr02:145800164-147650365	Chr03:10533941-12119470	mixed	58	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 58 · Showing 1–58 · Page 1/1

Download All Anchors TSV

TkA02G565750 → LXL04_012423

95.3%

TkA02G565760 → LXL04_012422

100.0%

TkA02G565930 → LXL04_012421

99.2%

TkA02G565940 → LXL04_012420

95.1%

TkA02G566370 → LXL04_012414

99.6%

TkA02G566480 → LXL04_012413

95.8%

TkA02G566490 → LXL04_012412

100.0%

TkA02G566510 → LXL04_012411

49.3%

TkA02G566520 → LXL04_012411

66.7%

TkA02G566770 → LXL04_012410

100.0%

TkA02G566780 → LXL04_012409

99.9%

TkA02G566790 → LXL04_012408

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G565750`	`LXL04_012423`	`JCVI_TKOH_00097`	95.3	99.845 / 99.848	Review
`TkA02G565760`	`LXL04_012422`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Review
`TkA02G565930`	`LXL04_012421`	`JCVI_TKOH_00097`	99.2	92.537 / 76.074	Complex
`TkA02G565940`	`LXL04_012420`	`JCVI_TKOH_00097`	95.1	100.0 / 81.053	Complex
`TkA02G566370`	`LXL04_012414`	`JCVI_TKOH_00097`	99.6	100.0 / 100.0	Strict
`TkA02G566480`	`LXL04_012413`	`JCVI_TKOH_00097`	95.8	100.0 / 100.0	Complex
`TkA02G566490`	`LXL04_012412`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Review
`TkA02G566510`	`LXL04_012411`	`JCVI_TKOH_00097`	49.3	87.356 / 72.757	Complex
`TkA02G566520`	`LXL04_012411`	`JCVI_TKOH_00097`	66.7	100.0 / 68.771	Complex
`TkA02G566770`	`LXL04_012410`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Review
`TkA02G566780`	`LXL04_012409`	`JCVI_TKOH_00097`	99.9	100.0 / 99.728	Complex
`TkA02G566790`	`LXL04_012408`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Review
`TkA02G566820`	`LXL04_012407`	`JCVI_TKOH_00097`	99.3	99.296 / 35.696	Review
`TkA02G566890`	`LXL04_012407`	`JCVI_TKOH_00097`	99.9	84.179 / 44.114	Review
`TkA02G566940`	`LXL04_012406`	`JCVI_TKOH_00097`	99.8	100.0 / 100.0	Complex
`TkA02G567040`	`LXL04_012404`	`JCVI_TKOH_00097`	99.4	92.982 / 100.0	Review
`TkA02G567050`	`LXL04_012403`	`JCVI_TKOH_00097`	66.9	100.0 / 100.0	Review
`TkA02G567060`	`LXL04_012402`	`JCVI_TKOH_00097`	99.9	100.0 / 100.0	Strict
`TkA02G567520`	`LXL04_012398`	`JCVI_TKOH_00097`	99.7	100.0 / 100.0	Complex
`TkA02G567530`	`LXL04_012396`	`JCVI_TKOH_00097`	65.6	97.806 / 78.903	Complex
`TkA02G567570`	`LXL04_012393`	`JCVI_TKOH_00097`	100.0	66.667 / 28.715	Complex
`TkA02G567580`	`LXL04_012392`	`JCVI_TKOH_00097`	96.6	93.814 / 99.846	Complex
`TkA02G567600`	`LXL04_012391`	`JCVI_TKOH_00097`	85.0	100.0 / 100.0	Complex
`TkA02G567610`	`LXL04_012390`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G567710`	`LXL04_012389`	`JCVI_TKOH_00097`	99.6	100.0 / 100.0	Complex
`TkA02G567720`	`LXL04_012388`	`JCVI_TKOH_00097`	98.0	93.795 / 87.528	Complex
`TkA02G568020`	`LXL04_012382`	`JCVI_TKOH_00097`	83.9	100.0 / 96.0	Complex
`TkA02G568030`	`LXL04_012381`	`JCVI_TKOH_00097`	99.7	98.726 / 66.81	Complex
`TkA02G568080`	`LXL04_012379`	`JCVI_TKOH_00097`	99.4	66.288 / 23.026	Complex
`TkA02G568100`	`LXL04_012378`	`JCVI_TKOH_00097`	98.3	96.648 / 57.033	Review
`TkA02G568660`	`LXL04_012377`	`JCVI_TKOH_00097`	99.7	100.0 / 83.457	Complex
`TkA02G569120`	`LXL04_012375`	`JCVI_TKOH_00097`	100.0	95.213 / 89.055	Complex
`TkA02G569320`	`LXL04_012372`	`JCVI_TKOH_00097`	98.6	100.0 / 100.0	Complex
`TkA02G569330`	`LXL04_012371`	`JCVI_TKOH_00097`	98.1	90.864 / 54.118	Review
`TkA02G569400`	`LXL04_012370`	`JCVI_TKOH_00097`	94.6	98.667 / 98.835	Complex
`TkA02G569780`	`LXL04_012368`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G569860`	`LXL04_012367`	`JCVI_TKOH_00097`	99.4	100.0 / 100.0	Complex
`TkA02G569890`	`LXL04_012366`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G569930`	`LXL04_012365`	`JCVI_TKOH_00097`	98.4	100.0 / 100.0	Complex
`TkA02G569940`	`LXL04_012363`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G570560`	`LXL04_012362`	`JCVI_TKOH_00097`	99.4	100.0 / 100.0	Review
`TkA02G570700`	`LXL04_012359`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G570970`	`LXL04_012356`	`JCVI_TKOH_00097`	97.8	99.458 / 100.0	Complex
`TkA02G570990`	`LXL04_012355`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Complex
`TkA02G571040`	`LXL04_012353`	`JCVI_TKOH_00097`	99.4	100.0 / 100.0	Complex
`TkA02G571050`	`LXL04_012352`	`JCVI_TKOH_00097`	93.5	100.0 / 100.0	Complex
`TkA02G571110`	`LXL04_012351`	`JCVI_TKOH_00097`	97.7	100.0 / 100.0	Strict
`TkA02G571120`	`LXL04_012349`	`JCVI_TKOH_00097`	90.1	100.0 / 56.612	Complex
`TkA02G571190`	`LXL04_012349`	`JCVI_TKOH_00097`	71.1	97.927 / 79.132	Complex
`TkA02G571290`	`LXL04_012343`	`JCVI_TKOH_00097`	95.7	100.0 / 100.0	Strict
`TkA02G571380`	`LXL04_012340`	`JCVI_TKOH_00097`	85.8	99.425 / 48.67	Review
`TkA02G571390`	`LXL04_012339`	`JCVI_TKOH_00097`	91.9	100.0 / 100.0	Probable
`TkA02G571450`	`LXL04_012341`	`JCVI_TKOH_00097`	96.3	100.0 / 93.182	Strict
`TkA02G571480`	`LXL04_012340`	`JCVI_TKOH_00097`	86.5	92.157 / 33.245	Complex
`TkA02G571720`	`LXL04_012335`	`JCVI_TKOH_00097`	81.6	96.721 / 82.645	Complex
`TkA02G571730`	`LXL04_012334`	`JCVI_TKOH_00097`	100.0	100.0 / 100.0	Strict
`TkA02G571760`	`LXL04_012333`	`JCVI_TKOH_00097`	99.1	97.468 / 48.993	Review
`TkA02G571770`	`LXL04_012333`	`JCVI_TKOH_00097`	99.6	99.588 / 51.22	Review