Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00030

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 79

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00030

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00030 Chr01 109936447-112346394 Chr01 44348191-46054694 mixed High 79 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00030`	Chr01:109936447-112346394	Chr01:44348191-46054694	mixed	79	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 79 · Showing 1–79 · Page 1/1

Download All Anchors TSV

TkA01G440660 → LXL04_002229

99.6%

TkA01G440670 → LXL04_002230

100.0%

TkA01G440770 → LXL04_002231

99.4%

TkA01G440800 → LXL04_002232

96.4%

TkA01G440850 → LXL04_002234

100.0%

TkA01G440920 → LXL04_002235

100.0%

TkA01G440980 → LXL04_002237

100.0%

TkA01G440990 → LXL04_002238

100.0%

TkA01G441000 → LXL04_002239

99.4%

TkA01G441070 → LXL04_002241

74.0%

TkA01G441100 → LXL04_002242

91.7%

TkA01G441110 → LXL04_002243

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G440660`	`LXL04_002229`	`JCVI_TKOH_00030`	99.6	99.627 / 97.445	Strict
`TkA01G440670`	`LXL04_002230`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Review
`TkA01G440770`	`LXL04_002231`	`JCVI_TKOH_00030`	99.4	92.368 / 82.517	Strict
`TkA01G440800`	`LXL04_002232`	`JCVI_TKOH_00030`	96.4	94.186 / 92.798	Complex
`TkA01G440850`	`LXL04_002234`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Strict
`TkA01G440920`	`LXL04_002235`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Strict
`TkA01G440980`	`LXL04_002237`	`JCVI_TKOH_00030`	100.0	99.194 / 53.017	Review
`TkA01G440990`	`LXL04_002238`	`JCVI_TKOH_00030`	100.0	99.292 / 72.461	Complex
`TkA01G441000`	`LXL04_002239`	`JCVI_TKOH_00030`	99.4	96.471 / 21.607	Review
`TkA01G441070`	`LXL04_002241`	`JCVI_TKOH_00030`	74.0	100.0 / 100.0	Complex
`TkA01G441100`	`LXL04_002242`	`JCVI_TKOH_00030`	91.7	92.308 / 32.636	Complex
`TkA01G441110`	`LXL04_002243`	`JCVI_TKOH_00030`	100.0	100.0 / 70.787	Complex
`TkA01G441120`	`LXL04_002244`	`JCVI_TKOH_00030`	80.6	73.134 / 25.258	Complex
`TkA01G441130`	`LXL04_002245`	`JCVI_TKOH_00030`	91.8	93.388 / 64.474	Complex
`TkA01G441140`	`LXL04_002246`	`JCVI_TKOH_00030`	99.8	100.0 / 100.0	Review
`TkA01G441170`	`LXL04_002247`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex
`TkA01G441200`	`LXL04_002248`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Strict
`TkA01G441280`	`LXL04_002250`	`JCVI_TKOH_00030`	71.6	55.581 / 38.095	Complex
`TkA01G441340`	`LXL04_002249`	`JCVI_TKOH_00030`	99.8	100.0 / 100.0	Strict
`TkA01G441430`	`LXL04_002250`	`JCVI_TKOH_00030`	99.1	95.671 / 60.136	Complex
`TkA01G441540`	`LXL04_002255`	`JCVI_TKOH_00030`	72.8	99.045 / 42.105	Complex
`TkA01G441560`	`LXL04_002255`	`JCVI_TKOH_00030`	95.7	99.561 / 24.252	Review
`TkA01G441590`	`LXL04_002239`	`JCVI_TKOH_00030`	97.8	98.995 / 79.183	Complex
`TkA01G441620`	`LXL04_002240`	`JCVI_TKOH_00030`	99.5	100.0 / 100.0	Strict
`TkA01G441680`	`LXL04_002241`	`JCVI_TKOH_00030`	78.0	100.0 / 98.928	Complex
`TkA01G441710`	`LXL04_002242`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Strict
`TkA01G441720`	`LXL04_002243`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Review
`TkA01G441730`	`LXL04_002244`	`JCVI_TKOH_00030`	97.1	86.07 / 44.588	Review
`TkA01G441750`	`LXL04_002245`	`JCVI_TKOH_00030`	94.7	97.554 / 99.474	Complex
`TkA01G441760`	`LXL04_002246`	`JCVI_TKOH_00030`	99.6	100.0 / 100.0	Review
`TkA01G441810`	`LXL04_002247`	`JCVI_TKOH_00030`	97.8	100.0 / 100.0	Complex
`TkA01G441820`	`LXL04_002250`	`JCVI_TKOH_00030`	71.6	55.581 / 38.095	Complex
`TkA01G442010`	`LXL04_002249`	`JCVI_TKOH_00030`	77.3	75.0 / 16.481	Complex
`TkA01G442050`	`LXL04_002250`	`JCVI_TKOH_00030`	99.3	95.879 / 60.136	Complex
`TkA01G442080`	`LXL04_002250`	`JCVI_TKOH_00030`	97.8	100.0 / 24.354	Review
`TkA01G442090`	`LXL04_002251`	`JCVI_TKOH_00030`	98.3	100.0 / 40.592	Review
`TkA01G442100`	`LXL04_002251`	`JCVI_TKOH_00030`	100.0	99.44 / 46.429	Review
`TkA01G442120`	`LXL04_002253`	`JCVI_TKOH_00030`	93.7	100.0 / 100.0	Probable
`TkA01G442140`	`LXL04_002255`	`JCVI_TKOH_00030`	96.7	82.218 / 40.557	Review
`TkA01G442160`	`LXL04_002255`	`JCVI_TKOH_00030`	94.5	99.561 / 24.252	Complex
`TkA01G442210`	`LXL04_002256`	`JCVI_TKOH_00030`	98.0	81.075 / 78.685	Probable
`TkA01G442950`	`LXL04_002259`	`JCVI_TKOH_00030`	99.8	87.159 / 100.0	Complex
`TkA01G442990`	`LXL04_002260`	`JCVI_TKOH_00030`	98.3	100.0 / 100.0	Strict
`TkA01G443000`	`LXL04_002261`	`JCVI_TKOH_00030`	76.4	100.0 / 98.582	Complex
`TkA01G443010`	`LXL04_002262`	`JCVI_TKOH_00030`	99.5	100.0 / 100.0	Strict
`TkA01G443030`	`LXL04_002263`	`JCVI_TKOH_00030`	98.7	79.0 / 36.916	Complex
`TkA01G443260`	`LXL04_002263`	`JCVI_TKOH_00030`	95.8	100.0 / 66.355	Review
`TkA01G443280`	`LXL04_002264`	`JCVI_TKOH_00030`	100.0	98.561 / 74.054	Complex
`TkA01G443310`	`LXL04_002266`	`JCVI_TKOH_00030`	99.7	100.0 / 100.0	Complex
`TkA01G443320`	`LXL04_002267`	`JCVI_TKOH_00030`	92.7	100.0 / 100.0	Review
`TkA01G443510`	`LXL04_002269`	`JCVI_TKOH_00030`	87.6	63.571 / 13.841	Complex
`TkA01G443630`	`LXL04_002270`	`JCVI_TKOH_00030`	98.3	100.0 / 100.0	Strict
`TkA01G443850`	`LXL04_002271`	`JCVI_TKOH_00030`	98.2	100.0 / 100.0	Strict
`TkA01G443930`	`LXL04_002272`	`JCVI_TKOH_00030`	97.9	100.0 / 100.0	Strict
`TkA01G443940`	`LXL04_002273`	`JCVI_TKOH_00030`	82.3	100.0 / 98.583	Review
`TkA01G444650`	`LXL04_002278`	`JCVI_TKOH_00030`	97.3	100.0 / 100.0	Complex
`TkA01G444660`	`LXL04_002279`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex
`TkA01G444670`	`LXL04_002280`	`JCVI_TKOH_00030`	99.7	100.0 / 100.0	Complex
`TkA01G444860`	`LXL04_002281`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex
`TkA01G444900`	`LXL04_002284`	`JCVI_TKOH_00030`	96.5	100.0 / 100.0	Complex
`TkA01G444910`	`LXL04_002283`	`JCVI_TKOH_00030`	99.5	100.0 / 100.0	Complex
`TkA01G444930`	`LXL04_002282`	`JCVI_TKOH_00030`	99.0	97.101 / 57.925	Review
`TkA01G445470`	`LXL04_002289`	`JCVI_TKOH_00030`	99.9	100.0 / 100.0	Complex
`TkA01G445550`	`LXL04_002291`	`JCVI_TKOH_00030`	76.8	100.0 / 100.0	Review
`TkA01G445820`	`LXL04_002293`	`JCVI_TKOH_00030`	99.0	100.0 / 100.0	Strict
`TkA01G446030`	`LXL04_002320`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex
`TkA01G446080`	`LXL04_002318`	`JCVI_TKOH_00030`	99.1	88.333 / 89.076	Review
`TkA01G446130`	`LXL04_002316`	`JCVI_TKOH_00030`	65.5	97.973 / 61.453	Complex
`TkA01G446250`	`LXL04_002315`	`JCVI_TKOH_00030`	82.0	65.926 / 60.959	Complex
`TkA01G446680`	`LXL04_002313`	`JCVI_TKOH_00030`	85.1	100.0 / 79.447	Complex
`TkA01G446690`	`LXL04_002312`	`JCVI_TKOH_00030`	100.0	23.118 / 28.477	Review
`TkA01G446780`	`LXL04_002311`	`JCVI_TKOH_00030`	66.8	95.349 / 57.716	Complex
`TkA01G446810`	`LXL04_002310`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex
`TkA01G447150`	`LXL04_002307`	`JCVI_TKOH_00030`	99.7	100.0 / 50.333	Review
`TkA01G447190`	`LXL04_002306`	`JCVI_TKOH_00030`	99.7	100.0 / 100.0	Complex
`TkA01G447300`	`LXL04_002305`	`JCVI_TKOH_00030`	97.9	94.843 / 85.081	Strict
`TkA01G447440`	`LXL04_002304`	`JCVI_TKOH_00030`	99.3	88.235 / 50.68	Review
`TkA01G447450`	`LXL04_002303`	`JCVI_TKOH_00030`	89.7	100.0 / 83.454	Complex
`TkA01G447660`	`LXL04_002301`	`JCVI_TKOH_00030`	100.0	100.0 / 100.0	Complex