Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00259

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 78

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00259

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00259 Chr06 24937-2511235 Chr05 127019195-129621829 mixed High 78 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00259`	Chr06:24937-2511235	Chr05:127019195-129621829	mixed	78	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 78 · Showing 1–78 · Page 1/1

Download All Anchors TSV

TkA06G000190 → LXL04_026612

100.0%

TkA06G000600 → LXL04_026611

96.5%

TkA06G000630 → LXL04_026610

99.7%

TkA06G000730 → LXL04_026609

98.2%

TkA06G000850 → LXL04_026608

94.6%

TkA06G000860 → LXL04_026607

54.1%

TkA06G000930 → LXL04_026606

96.3%

TkA06G000950 → LXL04_026604

100.0%

TkA06G001020 → LXL04_026602

99.9%

TkA06G001030 → LXL04_026601

99.1%

TkA06G001710 → LXL04_026599

99.8%

TkA06G002700 → LXL04_026587

98.7%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G000190`	`LXL04_026612`	`JCVI_TKOH_00259`	100.0	95.614 / 42.578	Review
`TkA06G000600`	`LXL04_026611`	`JCVI_TKOH_00259`	96.5	100.0 / 100.0	Review
`TkA06G000630`	`LXL04_026610`	`JCVI_TKOH_00259`	99.7	100.0 / 57.958	Review
`TkA06G000730`	`LXL04_026609`	`JCVI_TKOH_00259`	98.2	100.0 / 100.0	Complex
`TkA06G000850`	`LXL04_026608`	`JCVI_TKOH_00259`	94.6	100.0 / 58.824	Review
`TkA06G000860`	`LXL04_026607`	`JCVI_TKOH_00259`	54.1	96.0 / 17.918	Complex
`TkA06G000930`	`LXL04_026606`	`JCVI_TKOH_00259`	96.3	100.0 / 100.0	Strict
`TkA06G000950`	`LXL04_026604`	`JCVI_TKOH_00259`	100.0	88.038 / 82.143	Strict
`TkA06G001020`	`LXL04_026602`	`JCVI_TKOH_00259`	99.9	100.0 / 100.0	Strict
`TkA06G001030`	`LXL04_026601`	`JCVI_TKOH_00259`	99.1	100.0 / 100.0	Strict
`TkA06G001710`	`LXL04_026599`	`JCVI_TKOH_00259`	99.8	100.0 / 100.0	Strict
`TkA06G002700`	`LXL04_026587`	`JCVI_TKOH_00259`	98.7	100.0 / 95.652	Review
`TkA06G002730`	`LXL04_026587`	`JCVI_TKOH_00259`	99.4	100.0 / 95.652	Review
`TkA06G003160`	`LXL04_026588`	`JCVI_TKOH_00259`	74.5	94.444 / 81.452	Complex
`TkA06G003270`	`LXL04_026583`	`JCVI_TKOH_00259`	98.3	100.0 / 100.0	Strict
`TkA06G003300`	`LXL04_026582`	`JCVI_TKOH_00259`	99.3	100.0 / 100.0	Complex
`TkA06G003680`	`LXL04_026580`	`JCVI_TKOH_00259`	99.0	100.0 / 100.0	Strict
`TkA06G003770`	`LXL04_026579`	`JCVI_TKOH_00259`	97.4	83.212 / 88.716	Review
`TkA06G003850`	`LXL04_026577`	`JCVI_TKOH_00259`	95.3	100.0 / 100.0	Strict
`TkA06G004060`	`LXL04_026576`	`JCVI_TKOH_00259`	100.0	100.0 / 83.817	Strict
`TkA06G004300`	`LXL04_026573`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G004410`	`LXL04_026571`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G004480`	`LXL04_026568`	`JCVI_TKOH_00259`	88.8	100.0 / 100.0	Complex
`TkA06G004570`	`LXL04_026565`	`JCVI_TKOH_00259`	69.6	92.0 / 69.851	Review
`TkA06G004630`	`LXL04_026563`	`JCVI_TKOH_00259`	99.6	95.222 / 100.0	Complex
`TkA06G004720`	`LXL04_026560`	`JCVI_TKOH_00259`	99.1	98.636 / 76.95	Complex
`TkA06G004920`	`LXL04_026556`	`JCVI_TKOH_00259`	99.6	100.0 / 99.804	Complex
`TkA06G004970`	`LXL04_026556`	`JCVI_TKOH_00259`	62.8	86.653 / 82.711	Complex
`TkA06G005020`	`LXL04_026554`	`JCVI_TKOH_00259`	80.7	99.485 / 98.5	Complex
`TkA06G005060`	`LXL04_026554`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Complex
`TkA06G005400`	`LXL04_026549`	`JCVI_TKOH_00259`	60.8	100.0 / 100.0	Complex
`TkA06G005680`	`LXL04_026548`	`JCVI_TKOH_00259`	97.8	100.0 / 100.0	Complex
`TkA06G005950`	`LXL04_026546`	`JCVI_TKOH_00259`	99.8	95.682 / 97.229	Strict
`TkA06G006180`	`LXL04_026545`	`JCVI_TKOH_00259`	94.8	97.306 / 12.399	Complex
`TkA06G006310`	`LXL04_026543`	`JCVI_TKOH_00259`	100.0	98.913 / 68.012	Review
`TkA06G006320`	`LXL04_026542`	`JCVI_TKOH_00259`	99.6	95.714 / 66.667	Review
`TkA06G006390`	`LXL04_026538`	`JCVI_TKOH_00259`	90.6	97.71 / 48.462	Complex
`TkA06G006440`	`LXL04_026537`	`JCVI_TKOH_00259`	94.4	83.618 / 50.913	Review
`TkA06G006460`	`LXL04_026535`	`JCVI_TKOH_00259`	99.7	95.484 / 43.086	Review
`TkA06G006540`	`LXL04_026532`	`JCVI_TKOH_00259`	93.3	81.395 / 52.041	Review
`TkA06G006570`	`LXL04_026530`	`JCVI_TKOH_00259`	98.8	99.609 / 59.155	Review
`TkA06G006580`	`LXL04_026530`	`JCVI_TKOH_00259`	97.8	100.0 / 32.16	Review
`TkA06G006590`	`LXL04_026529`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G006600`	`LXL04_026528`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Complex
`TkA06G006610`	`LXL04_026527`	`JCVI_TKOH_00259`	99.4	99.096 / 91.899	Strict
`TkA06G006660`	`LXL04_026524`	`JCVI_TKOH_00259`	99.6	100.0 / 100.0	Complex
`TkA06G006720`	`LXL04_026523`	`JCVI_TKOH_00259`	81.3	100.0 / 100.0	Complex
`TkA06G006980`	`LXL04_026521`	`JCVI_TKOH_00259`	85.9	100.0 / 100.0	Review
`TkA06G007000`	`LXL04_026520`	`JCVI_TKOH_00259`	100.0	81.452 / 37.269	Review
`TkA06G007010`	`LXL04_026519`	`JCVI_TKOH_00259`	92.3	100.0 / 100.0	Review
`TkA06G007060`	`LXL04_026517`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Complex
`TkA06G007510`	`LXL04_026515`	`JCVI_TKOH_00259`	99.6	100.0 / 100.0	Strict
`TkA06G007520`	`LXL04_026514`	`JCVI_TKOH_00259`	78.8	100.0 / 83.019	Complex
`TkA06G007650`	`LXL04_026510`	`JCVI_TKOH_00259`	85.9	100.0 / 31.444	Complex
`TkA06G007670`	`LXL04_026510`	`JCVI_TKOH_00259`	98.9	75.61 / 17.002	Complex
`TkA06G007740`	`LXL04_026508`	`JCVI_TKOH_00259`	99.5	100.0 / 100.0	Strict
`TkA06G007760`	`LXL04_026507`	`JCVI_TKOH_00259`	99.7	100.0 / 100.0	Review
`TkA06G007840`	`LXL04_026506`	`JCVI_TKOH_00259`	96.6	99.659 / 58.635	Review
`TkA06G008020`	`LXL04_026505`	`JCVI_TKOH_00259`	99.6	100.0 / 100.0	Strict
`TkA06G008030`	`LXL04_026504`	`JCVI_TKOH_00259`	99.5	100.0 / 87.373	Strict
`TkA06G008600`	`LXL04_026500`	`JCVI_TKOH_00259`	99.4	88.722 / 74.526	Probable
`TkA06G008610`	`LXL04_026499`	`JCVI_TKOH_00259`	87.0	96.013 / 38.182	Review
`TkA06G008620`	`LXL04_026499`	`JCVI_TKOH_00259`	99.5	95.631 / 23.879	Review
`TkA06G008660`	`LXL04_026498`	`JCVI_TKOH_00259`	99.4	99.678 / 99.678	Strict
`TkA06G008670`	`LXL04_026497`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G008720`	`LXL04_026496`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G008760`	`LXL04_026495`	`JCVI_TKOH_00259`	99.8	100.0 / 100.0	Complex
`TkA06G008810`	`LXL04_026495`	`JCVI_TKOH_00259`	76.6	100.0 / 63.68	Complex
`TkA06G008820`	`LXL04_026494`	`JCVI_TKOH_00259`	100.0	100.0 / 100.0	Strict
`TkA06G008840`	`LXL04_026493`	`JCVI_TKOH_00259`	92.9	65.608 / 44.427	Complex
`TkA06G008920`	`LXL04_026493`	`JCVI_TKOH_00259`	99.8	97.133 / 43.969	Review
`TkA06G008950`	`LXL04_026492`	`JCVI_TKOH_00259`	99.7	100.0 / 100.0	Strict
`TkA06G009030`	`LXL04_026490`	`JCVI_TKOH_00259`	88.5	100.0 / 100.0	Complex
`TkA06G009340`	`LXL04_026488`	`JCVI_TKOH_00259`	94.7	100.0 / 100.0	Probable
`TkA06G009670`	`LXL04_026484`	`JCVI_TKOH_00259`	99.2	100.0 / 100.0	Strict
`TkA06G009690`	`LXL04_026483`	`JCVI_TKOH_00259`	100.0	85.47 / 97.087	Strict
`TkA06G009730`	`LXL04_026482`	`JCVI_TKOH_00259`	99.6	100.0 / 100.0	Strict
`TkA06G009740`	`LXL04_026481`	`JCVI_TKOH_00259`	99.8	100.0 / 100.0	Strict