Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00209

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 117

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00209

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00209 Chr04 123444583-130224206 Chr09 54795397-62204971 mixed High 117 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00209`	Chr04:123444583-130224206	Chr09:54795397-62204971	mixed	117	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 117 · Showing 1–117 · Page 1/1

Download All Anchors TSV

TkA04G488280 → LXL04_038964

98.2%

TkA04G488480 → LXL04_038964

82.3%

TkA04G488670 → LXL04_038966

99.2%

TkA04G488710 → LXL04_038966

100.0%

TkA04G488950 → LXL04_038969

99.8%

TkA04G488970 → LXL04_038970

97.9%

TkA04G489010 → LXL04_038972

99.2%

TkA04G489090 → LXL04_038975

98.4%

TkA04G489130 → LXL04_038976

97.0%

TkA04G489140 → LXL04_038977

97.5%

TkA04G489900 → LXL04_038981

70.4%

TkA04G489970 → LXL04_038981

96.3%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G488280`	`LXL04_038964`	`JCVI_TKOH_00209`	98.2	100.0 / 100.0	Complex
`TkA04G488480`	`LXL04_038964`	`JCVI_TKOH_00209`	82.3	99.872 / 92.562	Complex
`TkA04G488670`	`LXL04_038966`	`JCVI_TKOH_00209`	99.2	90.909 / 27.65	Review
`TkA04G488710`	`LXL04_038966`	`JCVI_TKOH_00209`	100.0	89.855 / 28.571	Review
`TkA04G488950`	`LXL04_038969`	`JCVI_TKOH_00209`	99.8	100.0 / 55.901	Review
`TkA04G488970`	`LXL04_038970`	`JCVI_TKOH_00209`	97.9	99.793 / 89.289	Strict
`TkA04G489010`	`LXL04_038972`	`JCVI_TKOH_00209`	99.2	100.0 / 100.0	Review
`TkA04G489090`	`LXL04_038975`	`JCVI_TKOH_00209`	98.4	89.291 / 98.916	Strict
`TkA04G489130`	`LXL04_038976`	`JCVI_TKOH_00209`	97.0	48.529 / 43.709	Complex
`TkA04G489140`	`LXL04_038977`	`JCVI_TKOH_00209`	97.5	99.871 / 86.952	Strict
`TkA04G489900`	`LXL04_038981`	`JCVI_TKOH_00209`	70.4	50.711 / 25.234	Complex
`TkA04G489970`	`LXL04_038981`	`JCVI_TKOH_00209`	96.3	23.684 / 6.308	Complex
`TkA04G490370`	`LXL04_038983`	`JCVI_TKOH_00209`	89.3	100.0 / 100.0	Review
`TkA04G490980`	`LXL04_038989`	`JCVI_TKOH_00209`	99.2	100.0 / 82.207	Complex
`TkA04G491330`	`LXL04_038994`	`JCVI_TKOH_00209`	99.8	100.0 / 100.0	Complex
`TkA04G491370`	`LXL04_038995`	`JCVI_TKOH_00209`	95.4	100.0 / 99.847	Complex
`TkA04G491840`	`LXL04_038998`	`JCVI_TKOH_00209`	80.6	99.085 / 99.387	Complex
`TkA04G491900`	`LXL04_038998`	`JCVI_TKOH_00209`	98.5	100.0 / 100.0	Complex
`TkA04G493280`	`LXL04_039008`	`JCVI_TKOH_00209`	97.9	100.0 / 100.0	Complex
`TkA04G493730`	`LXL04_039010`	`JCVI_TKOH_00209`	96.9	98.148 / 96.364	Complex
`TkA04G493890`	`LXL04_039013`	`JCVI_TKOH_00209`	99.1	100.0 / 100.0	Complex
`TkA04G495050`	`LXL04_039017`	`JCVI_TKOH_00209`	87.2	100.0 / 100.0	Complex
`TkA04G495640`	`LXL04_039013`	`JCVI_TKOH_00209`	62.1	94.064 / 94.064	Complex
`TkA04G496580`	`LXL04_039013`	`JCVI_TKOH_00209`	83.5	97.309 / 99.543	Complex
`TkA04G496760`	`LXL04_039027`	`JCVI_TKOH_00209`	93.8	100.0 / 100.0	Complex
`TkA04G496770`	`LXL04_039029`	`JCVI_TKOH_00209`	88.7	100.0 / 100.0	Review
`TkA04G496800`	`LXL04_039030`	`JCVI_TKOH_00209`	94.5	86.199 / 96.193	Probable
`TkA04G496810`	`LXL04_039031`	`JCVI_TKOH_00209`	92.5	92.823 / 82.378	Probable
`TkA04G496820`	`LXL04_039032`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G496970`	`LXL04_039035`	`JCVI_TKOH_00209`	98.8	70.796 / 59.259	Review
`TkA04G497460`	`LXL04_039037`	`JCVI_TKOH_00209`	98.3	100.0 / 100.0	Strict
`TkA04G497490`	`LXL04_039040`	`JCVI_TKOH_00209`	98.8	100.0 / 100.0	Strict
`TkA04G497680`	`LXL04_039041`	`JCVI_TKOH_00209`	100.0	100.0 / 33.835	Review
`TkA04G497960`	`LXL04_039045`	`JCVI_TKOH_00209`	97.2	93.243 / 75.673	Probable
`TkA04G499960`	`LXL04_039054`	`JCVI_TKOH_00209`	86.3	100.0 / 100.0	Review
`TkA04G499970`	`LXL04_039053`	`JCVI_TKOH_00209`	97.9	95.567 / 55.429	Review
`TkA04G500420`	`LXL04_039047`	`JCVI_TKOH_00209`	98.5	96.092 / 57.068	Review
`TkA04G500510`	`LXL04_039046`	`JCVI_TKOH_00209`	78.0	36.283 / 47.619	Review
`TkA04G500780`	`LXL04_039045`	`JCVI_TKOH_00209`	100.0	94.815 / 12.762	Review
`TkA04G500870`	`LXL04_039067`	`JCVI_TKOH_00209`	99.4	93.716 / 63.401	Review
`TkA04G500930`	`LXL04_039068`	`JCVI_TKOH_00209`	100.0	100.0 / 64.54	Review
`TkA04G501090`	`LXL04_039069`	`JCVI_TKOH_00209`	100.0	100.0 / 90.426	Complex
`TkA04G501240`	`LXL04_039070`	`JCVI_TKOH_00209`	98.1	100.0 / 61.254	Review
`TkA04G501260`	`LXL04_039071`	`JCVI_TKOH_00209`	98.8	99.919 / 97.456	Strict
`TkA04G501270`	`LXL04_039072`	`JCVI_TKOH_00209`	99.4	98.489 / 93.541	Complex
`TkA04G501750`	`LXL04_039072`	`JCVI_TKOH_00209`	99.8	98.665 / 100.0	Complex
`TkA04G501870`	`LXL04_039073`	`JCVI_TKOH_00209`	97.2	78.247 / 99.799	Probable
`TkA04G502100`	`LXL04_039075`	`JCVI_TKOH_00209`	98.8	100.0 / 95.977	Strict
`TkA04G502670`	`LXL04_039080`	`JCVI_TKOH_00209`	92.9	75.785 / 78.037	Probable
`TkA04G502680`	`LXL04_039081`	`JCVI_TKOH_00209`	95.2	94.993 / 85.695	Strict
`TkA04G502720`	`LXL04_039082`	`JCVI_TKOH_00209`	87.0	97.149 / 66.579	Review
`TkA04G503170`	`LXL04_039087`	`JCVI_TKOH_00209`	99.6	100.0 / 100.0	Complex
`TkA04G503680`	`LXL04_039090`	`JCVI_TKOH_00209`	91.6	100.0 / 100.0	Probable
`TkA04G503690`	`LXL04_039091`	`JCVI_TKOH_00209`	93.6	100.0 / 100.0	Probable
`TkA04G504060`	`LXL04_039093`	`JCVI_TKOH_00209`	99.8	100.0 / 100.0	Strict
`TkA04G504250`	`LXL04_039096`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G504350`	`LXL04_039098`	`JCVI_TKOH_00209`	99.8	100.0 / 100.0	Strict
`TkA04G504440`	`LXL04_039100`	`JCVI_TKOH_00209`	98.7	95.567 / 44.546	Review
`TkA04G504480`	`LXL04_039103`	`JCVI_TKOH_00209`	99.2	100.0 / 100.0	Complex
`TkA04G504540`	`LXL04_039105`	`JCVI_TKOH_00209`	99.4	100.0 / 100.0	Complex
`TkA04G504550`	`LXL04_039106`	`JCVI_TKOH_00209`	99.2	100.0 / 100.0	Strict
`TkA04G504600`	`LXL04_039108`	`JCVI_TKOH_00209`	99.1	99.892 / 99.892	Strict
`TkA04G504790`	`LXL04_039109`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Complex
`TkA04G504930`	`LXL04_039110`	`JCVI_TKOH_00209`	97.5	100.0 / 65.432	Complex
`TkA04G504970`	`LXL04_039111`	`JCVI_TKOH_00209`	99.1	98.34 / 86.083	Complex
`TkA04G505010`	`LXL04_039113`	`JCVI_TKOH_00209`	99.4	100.0 / 100.0	Strict
`TkA04G505020`	`LXL04_039115`	`JCVI_TKOH_00209`	78.4	94.69 / 100.0	Complex
`TkA04G505090`	`LXL04_039117`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Review
`TkA04G505220`	`LXL04_039118`	`JCVI_TKOH_00209`	100.0	77.297 / 73.333	Review
`TkA04G505530`	`LXL04_039120`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Review
`TkA04G505740`	`LXL04_039122`	`JCVI_TKOH_00209`	89.0	100.0 / 100.0	Review
`TkA04G505750`	`LXL04_039123`	`JCVI_TKOH_00209`	99.6	100.0 / 87.5	Strict
`TkA04G505970`	`LXL04_039124`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G506040`	`LXL04_039125`	`JCVI_TKOH_00209`	83.7	100.0 / 95.378	Review
`TkA04G506470`	`LXL04_039126`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G506630`	`LXL04_039137`	`JCVI_TKOH_00209`	96.7	88.056 / 77.872	Complex
`TkA04G506680`	`LXL04_039136`	`JCVI_TKOH_00209`	99.3	98.958 / 96.569	Complex
`TkA04G506980`	`LXL04_039134`	`JCVI_TKOH_00209`	90.6	100.0 / 100.0	Probable
`TkA04G507020`	`LXL04_039111`	`JCVI_TKOH_00209`	98.7	98.34 / 86.083	Complex
`TkA04G507070`	`LXL04_039133`	`JCVI_TKOH_00209`	99.1	100.0 / 100.0	Strict
`TkA04G507110`	`LXL04_039132`	`JCVI_TKOH_00209`	89.8	100.0 / 100.0	Review
`TkA04G507180`	`LXL04_039128`	`JCVI_TKOH_00209`	97.2	100.0 / 100.0	Strict
`TkA04G508050`	`LXL04_039138`	`JCVI_TKOH_00209`	87.2	100.0 / 100.0	Review
`TkA04G508260`	`LXL04_039142`	`JCVI_TKOH_00209`	97.3	100.0 / 100.0	Strict
`TkA04G508590`	`LXL04_039143`	`JCVI_TKOH_00209`	100.0	100.0 / 47.545	Review
`TkA04G508620`	`LXL04_039144`	`JCVI_TKOH_00209`	95.2	97.021 / 41.23	Review
`TkA04G508780`	`LXL04_039146`	`JCVI_TKOH_00209`	100.0	85.128 / 47.977	Review
`TkA04G509400`	`LXL04_039153`	`JCVI_TKOH_00209`	99.7	100.0 / 100.0	Strict
`TkA04G509600`	`LXL04_039154`	`JCVI_TKOH_00209`	100.0	91.22 / 98.768	Strict
`TkA04G509820`	`LXL04_039155`	`JCVI_TKOH_00209`	91.5	94.831 / 98.557	Probable
`TkA04G509830`	`LXL04_039157`	`JCVI_TKOH_00209`	86.6	100.0 / 100.0	Review
`TkA04G510050`	`LXL04_039160`	`JCVI_TKOH_00209`	99.4	100.0 / 100.0	Strict
`TkA04G510100`	`LXL04_039162`	`JCVI_TKOH_00209`	95.7	100.0 / 100.0	Strict
`TkA04G510890`	`LXL04_039169`	`JCVI_TKOH_00209`	100.0	100.0 / 53.333	Review
`TkA04G510910`	`LXL04_039169`	`JCVI_TKOH_00209`	99.3	100.0 / 53.333	Review
`TkA04G510990`	`LXL04_039172`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G511740`	`LXL04_039174`	`JCVI_TKOH_00209`	92.2	100.0 / 100.0	Probable
`TkA04G512740`	`LXL04_039177`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G513370`	`LXL04_039178`	`JCVI_TKOH_00209`	99.4	100.0 / 100.0	Strict
`TkA04G513380`	`LXL04_039180`	`JCVI_TKOH_00209`	85.5	100.0 / 100.0	Review
`TkA04G513390`	`LXL04_039181`	`JCVI_TKOH_00209`	99.4	100.0 / 100.0	Strict
`TkA04G513400`	`LXL04_039182`	`JCVI_TKOH_00209`	87.5	100.0 / 100.0	Complex
`TkA04G513440`	`LXL04_039183`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Complex
`TkA04G513840`	`LXL04_039183`	`JCVI_TKOH_00209`	73.2	99.666 / 70.709	Complex
`TkA04G513930`	`LXL04_039183`	`JCVI_TKOH_00209`	58.7	78.704 / 19.451	Complex
`TkA04G514130`	`LXL04_039184`	`JCVI_TKOH_00209`	92.4	51.974 / 68.103	Review
`TkA04G514150`	`LXL04_039187`	`JCVI_TKOH_00209`	90.7	100.0 / 100.0	Probable
`TkA04G514160`	`LXL04_039189`	`JCVI_TKOH_00209`	97.4	90.983 / 99.958	Strict
`TkA04G514470`	`LXL04_039190`	`JCVI_TKOH_00209`	98.3	100.0 / 98.615	Strict
`TkA04G514560`	`LXL04_039191`	`JCVI_TKOH_00209`	98.5	100.0 / 100.0	Strict
`TkA04G514600`	`LXL04_039192`	`JCVI_TKOH_00209`	93.8	94.989 / 81.801	Probable
`TkA04G514640`	`LXL04_039194`	`JCVI_TKOH_00209`	99.8	99.4 / 100.0	Strict
`TkA04G514650`	`LXL04_039195`	`JCVI_TKOH_00209`	99.7	100.0 / 100.0	Strict
`TkA04G514750`	`LXL04_039197`	`JCVI_TKOH_00209`	100.0	100.0 / 100.0	Strict
`TkA04G514880`	`LXL04_039198`	`JCVI_TKOH_00209`	97.2	100.0 / 54.969	Review
`TkA04G514960`	`LXL04_039201`	`JCVI_TKOH_00209`	83.9	100.0 / 100.0	Complex
`TkA04G515270`	`LXL04_039203`	`JCVI_TKOH_00209`	100.0	100.0 / 77.143	Probable