LXL04_039096 | RubberDandelionOmics

Gene overview

LXL04_039096

Reference: OH-1004 Chr: Chr09 Coordinates: 59252510-59253791 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_039096|LXL04_039096|OH1004|cDNA

ATGAACCCTGAAAGCCTAGTCCACTATGTGTCGGCAATCGTCACCGTCTTACTCGCTTCGACGCTTGTTCTCATAACCACCAGCGACTTGACGCCGGCTCCATCTTCACCGCCGCCTGGAGGCTGTGCCGACTCCGTCATCTCCTTTTCGCCTTGCCTTCCCTTCATATCCGCCCCGCCAAATGATCTCTCCGACGAACCTTCAACTCAATGCTGCGACATCTTCAACGGAGCTTTTGCTTCCGGCAAGGCCGAATGTCT...

CDS

Download CDS FASTA

654 bp · LXL04_039096|LXL04_039096|OH1004|CDS

ATGAACCCTGAAAGCCTAGTCCACTATGTGTCGGCAATCGTCACCGTCTTACTCGCTTCGACGCTTGTTCTCATAACCACCAGCGACTTGACGCCGGCTCCATCTTCACCGCCGCCTGGAGGCTGTGCCGACTCCGTCATCTCCTTTTCGCCTTGCCTTCCCTTCATATCCGCCCCGCCAAATGATCTCTCCGACGAACCTTCAACTCAATGCTGCGACATCTTCAACGGAGCTTTTGCTTCCGGCAAGGCCGAATGTCT...

Protein

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217 aa · LXL04_039096|LXL04_039096|OH1004|PROTEIN

MNPESLVHYVSAIVTVLLASTLVLITTSDLTPAPSSPPPGGCADSVISFSPCLPFISAPPNDLSDEPSTQCCDIFNGAFASGKAECLCYLVRQNTLLGFPLNASKLLSLSDQCPVNSNTQGFQANNTNTSLGSICSGSEILPPLISDTRNPHSGSNSNARRSPPASPTFRPPPPPPPPPPTSTNRSSVPPIPKPPKNNGNHLVPAVALMPIYLGFFV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039096`
TK1151 ID	TkA04G504250
OH-1004 ID	LXL04_039096
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039096

Location Chr09:59252510-59253791 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14805`	Probable lipid transfer protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_039096 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

KEGG gene cross-reference

ath:AT4G14805

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.694

Rank 1 · LXL04_039096 · OH-1004

Endoplasmic reticulum0.124

Rank 2 · LXL04_039096 · OH-1004

Extracellular0.102

Rank 3 · LXL04_039096 · OH-1004

Cytoplasm0.084

Rank 4 · LXL04_039096 · OH-1004

Nucleus0.062

Rank 5 · LXL04_039096 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368.12LTP_231-118 aa

PF00234.28Tryp_alpha_amyl42-118 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039096	`PF14368.12`	LTP_2	31	118	1.4e-12	48.3
LXL04_039096	`PF00234.28`	Tryp_alpha_amyl	42	118	1e-05	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JIG1`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 25	41.447%	Swiss-Prot	moderate database homology

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