Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00246
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 371
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00246

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00246 Chr05 107733919-119088086 Chr04 140584671-152192960 mixed High 200 anchors
Chr05 107733919-119088086 Chr04 140584671-152192960 JCVI_TKOH_00246 · 371 gene pairs TkA05G432030 | LXL04_021929 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA05G432040 | LXL04_021930 | 99.4% | sequence_supported_annotation_or_model_conflict | Review TkA05G432050 | LXL04_021930 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA05G432100 | LXL04_021931 | 98.0% | RBH_high_identity_coverage_synteny | Strict TkA05G432250 | LXL04_021933 | 100.0% | multi_source_to_OH1004 | Complex TkA05G432400 | LXL04_021935 | 85.1% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G432550 | LXL04_021938 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA05G432650 | LXL04_021941 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA05G432660 | LXL04_021942 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA05G432810 | LXL04_021943 | 99.1% | sequence_supported_annotation_or_model_conflict | Review TkA05G432830 | LXL04_021945 | 97.9% | RBH_sequence_supported | Probable TkA05G432980 | LXL04_021948 | 99.4% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00246 Chr05:107733919-119088086 Chr04:140584671-152192960 mixed 371 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 371 · Showing 1–200 · Page 1/2

TkA05G432030 → LXL04_021929
100.0%
TkA05G432040 → LXL04_021930
99.4%
TkA05G432050 → LXL04_021930
100.0%
TkA05G432100 → LXL04_021931
98.0%
TkA05G432250 → LXL04_021933
100.0%
TkA05G432400 → LXL04_021935
85.1%
TkA05G432550 → LXL04_021938
100.0%
TkA05G432650 → LXL04_021941
100.0%
TkA05G432660 → LXL04_021942
100.0%
TkA05G432810 → LXL04_021943
99.1%
TkA05G432830 → LXL04_021945
97.9%
TkA05G432980 → LXL04_021948
99.4%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA05G432030LXL04_021929JCVI_TKOH_00246100.086.577 / 100.0Strict
TkA05G432040LXL04_021930JCVI_TKOH_0024699.496.175 / 16.191Review
TkA05G432050LXL04_021930JCVI_TKOH_00246100.0100.0 / 37.718Review
TkA05G432100LXL04_021931JCVI_TKOH_0024698.0100.0 / 100.0Strict
TkA05G432250LXL04_021933JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G432400LXL04_021935JCVI_TKOH_0024685.1100.0 / 100.0Review
TkA05G432550LXL04_021938JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G432650LXL04_021941JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G432660LXL04_021942JCVI_TKOH_00246100.0100.0 / 25.622Review
TkA05G432810LXL04_021943JCVI_TKOH_0024699.1100.0 / 100.0Review
TkA05G432830LXL04_021945JCVI_TKOH_0024697.9100.0 / 70.715Probable
TkA05G432980LXL04_021948JCVI_TKOH_0024699.490.0 / 82.569Strict
TkA05G433170LXL04_021953JCVI_TKOH_0024699.3100.0 / 100.0Strict
TkA05G433180LXL04_021954JCVI_TKOH_0024693.299.595 / 78.088Probable
TkA05G433210LXL04_021955JCVI_TKOH_0024698.193.532 / 99.613Strict
TkA05G433410LXL04_021957JCVI_TKOH_0024699.5100.0 / 100.0Strict
TkA05G433460LXL04_021962JCVI_TKOH_0024675.699.731 / 98.677Complex
TkA05G433560LXL04_021962JCVI_TKOH_0024693.4100.0 / 100.0Complex
TkA05G433910LXL04_021963JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G434440LXL04_021964JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G435840LXL04_021964JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G435900LXL04_021965JCVI_TKOH_0024691.4100.0 / 85.876Probable
TkA05G435980LXL04_021966JCVI_TKOH_00246100.094.904 / 96.753Complex
TkA05G435990LXL04_021967JCVI_TKOH_0024687.599.829 / 48.434Complex
TkA05G436000LXL04_021968JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G436010LXL04_021969JCVI_TKOH_0024699.8100.0 / 100.0Strict
TkA05G436100LXL04_021971JCVI_TKOH_00246100.0100.0 / 41.199Review
TkA05G436210LXL04_021975JCVI_TKOH_0024661.095.909 / 37.092Complex
TkA05G436270LXL04_021972JCVI_TKOH_00246100.065.143 / 94.215Review
TkA05G436340LXL04_021975JCVI_TKOH_0024654.897.409 / 40.033Complex
TkA05G436460LXL04_021975JCVI_TKOH_0024654.195.098 / 37.418Complex
TkA05G436540LXL04_021975JCVI_TKOH_0024666.995.294 / 37.745Complex
TkA05G436580LXL04_021975JCVI_TKOH_0024699.695.804 / 44.935Review
TkA05G436660LXL04_021976JCVI_TKOH_00246100.0100.0 / 87.097Complex
TkA05G436670LXL04_021977JCVI_TKOH_0024698.499.607 / 98.842Strict
TkA05G436870LXL04_021978JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G436890LXL04_021979JCVI_TKOH_00246100.0100.0 / 92.208Strict
TkA05G436910LXL04_021980JCVI_TKOH_0024690.8100.0 / 32.853Complex
TkA05G436920LXL04_021980JCVI_TKOH_0024699.277.922 / 17.291Complex
TkA05G436930LXL04_021980JCVI_TKOH_0024699.696.341 / 34.15Review
TkA05G436940LXL04_021981JCVI_TKOH_0024690.499.278 / 72.772Probable
TkA05G436950LXL04_021981JCVI_TKOH_0024680.3100.0 / 14.274Complex
TkA05G437060LXL04_021984JCVI_TKOH_00246100.046.584 / 12.69Complex
TkA05G437130LXL04_021986JCVI_TKOH_0024667.699.362 / 89.371Complex
TkA05G437430LXL04_021987JCVI_TKOH_0024679.390.0 / 44.809Complex
TkA05G437700LXL04_021989JCVI_TKOH_0024699.791.26 / 59.966Review
TkA05G437900LXL04_021990JCVI_TKOH_0024659.4100.0 / 73.453Review
TkA05G438050LXL04_021993JCVI_TKOH_0024693.329.126 / 23.438Review
TkA05G438390LXL04_021996JCVI_TKOH_0024695.0100.0 / 62.393Complex
TkA05G438400LXL04_021997JCVI_TKOH_0024669.8100.0 / 100.0Complex
TkA05G438410LXL04_021998JCVI_TKOH_0024697.099.691 / 74.041Complex
TkA05G438430LXL04_021999JCVI_TKOH_0024699.588.066 / 63.314Complex
TkA05G438440LXL04_022000JCVI_TKOH_0024685.4100.0 / 100.0Complex
TkA05G438480LXL04_022001JCVI_TKOH_0024698.9100.0 / 91.042Complex
TkA05G438490LXL04_022002JCVI_TKOH_00246100.096.22 / 96.22Complex
TkA05G438570LXL04_022004JCVI_TKOH_0024697.2100.0 / 98.77Complex
TkA05G438580LXL04_022005JCVI_TKOH_0024698.896.886 / 98.602Strict
TkA05G438870LXL04_022008JCVI_TKOH_00246100.091.364 / 49.024Review
TkA05G438880LXL04_022008JCVI_TKOH_00246100.082.843 / 41.22Complex
TkA05G438920LXL04_022009JCVI_TKOH_0024699.6100.0 / 100.0Strict
TkA05G438940LXL04_022010JCVI_TKOH_0024699.1100.0 / 14.046Review
TkA05G439160LXL04_022015JCVI_TKOH_0024693.7100.0 / 81.18Probable
TkA05G439170LXL04_022016JCVI_TKOH_0024699.387.5 / 50.0Review
TkA05G439180LXL04_022017JCVI_TKOH_0024652.590.503 / 49.673Review
TkA05G439260LXL04_022021JCVI_TKOH_0024699.579.051 / 64.725Complex
TkA05G439320LXL04_022022JCVI_TKOH_0024685.380.147 / 36.7Complex
TkA05G439640LXL04_022023JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G439780LXL04_022024JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G442190LXL04_022038JCVI_TKOH_0024690.9100.0 / 100.0Probable
TkA05G442200LXL04_022039JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G442210LXL04_022040JCVI_TKOH_0024693.399.029 / 59.116Review
TkA05G442620LXL04_022043JCVI_TKOH_00246100.0100.0 / 53.091Review
TkA05G442640LXL04_022044JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G442780LXL04_022045JCVI_TKOH_0024699.8100.0 / 100.0Strict
TkA05G442940LXL04_022045JCVI_TKOH_0024698.965.693 / 16.364Complex
TkA05G442950LXL04_022048JCVI_TKOH_0024699.188.115 / 54.987Review
TkA05G443010LXL04_022050JCVI_TKOH_0024699.6100.0 / 100.0Strict
TkA05G443020LXL04_022051JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G443030LXL04_022052JCVI_TKOH_0024697.4100.0 / 100.0Strict
TkA05G443050LXL04_022053JCVI_TKOH_0024697.4100.0 / 65.411Review
TkA05G443060LXL04_022055JCVI_TKOH_0024683.2100.0 / 100.0Review
TkA05G443070LXL04_022058JCVI_TKOH_0024697.5100.0 / 77.528Complex
TkA05G443150LXL04_022057JCVI_TKOH_0024699.3100.0 / 100.0Strict
TkA05G443160LXL04_022058JCVI_TKOH_0024699.6100.0 / 77.809Complex
TkA05G443170LXL04_022059JCVI_TKOH_0024692.492.671 / 94.556Probable
TkA05G443380LXL04_022064JCVI_TKOH_0024697.9100.0 / 92.473Strict
TkA05G443400LXL04_022066JCVI_TKOH_0024698.9100.0 / 100.0Complex
TkA05G443950LXL04_022072JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G443970LXL04_022073JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G443980LXL04_022074JCVI_TKOH_0024697.8100.0 / 100.0Complex
TkA05G443990LXL04_022076JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G444010LXL04_022078JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G444020LXL04_022081JCVI_TKOH_0024698.684.351 / 84.351Strict
TkA05G444030LXL04_022080JCVI_TKOH_0024699.5100.0 / 100.0Strict
TkA05G444050LXL04_022083JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G444130LXL04_022084JCVI_TKOH_0024696.3100.0 / 98.123Strict
TkA05G444140LXL04_022085JCVI_TKOH_0024699.8100.0 / 100.0Strict
TkA05G444150LXL04_022086JCVI_TKOH_0024695.0100.0 / 100.0Strict
TkA05G444180LXL04_022088JCVI_TKOH_0024699.7100.0 / 100.0Strict
TkA05G444200LXL04_022090JCVI_TKOH_0024698.792.742 / 94.262Strict
TkA05G444250LXL04_022091JCVI_TKOH_0024699.1100.0 / 100.0Complex
TkA05G444370LXL04_022092JCVI_TKOH_0024697.497.965 / 86.935Strict
TkA05G444380LXL04_022093JCVI_TKOH_0024696.690.261 / 80.778Strict
TkA05G444390LXL04_022094JCVI_TKOH_0024697.6100.0 / 100.0Strict
TkA05G444640LXL04_022096JCVI_TKOH_0024697.7100.0 / 94.553Strict
TkA05G444690LXL04_022098JCVI_TKOH_0024699.4100.0 / 100.0Strict
TkA05G444700LXL04_022099JCVI_TKOH_0024699.9100.0 / 75.184Probable
TkA05G444760LXL04_022100JCVI_TKOH_0024694.6100.0 / 70.71Probable
TkA05G444900LXL04_022101JCVI_TKOH_0024699.4100.0 / 100.0Complex
TkA05G444950LXL04_022101JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G445190LXL04_022102JCVI_TKOH_0024695.3100.0 / 100.0Strict
TkA05G445200LXL04_022103JCVI_TKOH_0024690.3100.0 / 100.0Probable
TkA05G445590LXL04_022105JCVI_TKOH_0024698.996.658 / 51.791Review
TkA05G445660LXL04_022107JCVI_TKOH_0024699.0100.0 / 100.0Strict
TkA05G445670LXL04_022108JCVI_TKOH_0024699.7100.0 / 100.0Complex
TkA05G445830LXL04_022111JCVI_TKOH_0024674.8100.0 / 100.0Complex
TkA05G445840LXL04_022113JCVI_TKOH_0024698.8100.0 / 100.0Strict
TkA05G445870LXL04_022114JCVI_TKOH_0024699.6100.0 / 83.784Strict
TkA05G446200LXL04_022116JCVI_TKOH_00246100.067.586 / 21.973Complex
TkA05G446300LXL04_022117JCVI_TKOH_00246100.0100.0 / 82.059Strict
TkA05G446380LXL04_022119JCVI_TKOH_00246100.088.636 / 30.116Review
TkA05G446390LXL04_022120JCVI_TKOH_00246100.099.495 / 51.842Review
TkA05G446510LXL04_022122JCVI_TKOH_0024697.6100.0 / 100.0Strict
TkA05G446520LXL04_022123JCVI_TKOH_0024698.299.494 / 27.311Review
TkA05G446530LXL04_022123JCVI_TKOH_0024699.099.03 / 49.896Review
TkA05G446540LXL04_022125JCVI_TKOH_00246100.0100.0 / 88.778Strict
TkA05G446610LXL04_022127JCVI_TKOH_0024694.399.029 / 80.916Complex
TkA05G447050LXL04_022143JCVI_TKOH_0024688.697.222 / 81.07Review
TkA05G447260LXL04_022140JCVI_TKOH_0024698.0100.0 / 100.0Complex
TkA05G447270LXL04_022138JCVI_TKOH_0024696.8100.0 / 100.0Strict
TkA05G447290LXL04_022137JCVI_TKOH_00246100.0100.0 / 57.975Review
TkA05G447300LXL04_022136JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G447610LXL04_022146JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G447620LXL04_022147JCVI_TKOH_00246100.096.403 / 61.468Complex
TkA05G447660LXL04_022149JCVI_TKOH_0024688.091.509 / 83.862Complex
TkA05G447670LXL04_022149JCVI_TKOH_00246100.087.467 / 94.524Review
TkA05G447730LXL04_022151JCVI_TKOH_0024698.9100.0 / 97.35Complex
TkA05G447760LXL04_022152JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G447920LXL04_022153JCVI_TKOH_0024699.2100.0 / 91.367Complex
TkA05G448000LXL04_022154JCVI_TKOH_0024699.3100.0 / 100.0Strict
TkA05G448420LXL04_022157JCVI_TKOH_0024699.385.03 / 58.025Review
TkA05G448430LXL04_022158JCVI_TKOH_0024699.5100.0 / 57.31Review
TkA05G448440LXL04_022158JCVI_TKOH_00246100.0100.0 / 19.006Review
TkA05G448510LXL04_022159JCVI_TKOH_0024694.0100.0 / 100.0Probable
TkA05G448580LXL04_022162JCVI_TKOH_0024680.991.383 / 78.889Review
TkA05G448630LXL04_022163JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G448660LXL04_022164JCVI_TKOH_0024699.8100.0 / 100.0Complex
TkA05G448680LXL04_022166JCVI_TKOH_0024699.1100.0 / 100.0Strict
TkA05G448690LXL04_022167JCVI_TKOH_0024697.297.994 / 99.711Strict
TkA05G448720LXL04_022168JCVI_TKOH_0024697.799.895 / 73.41Probable
TkA05G448730LXL04_022169JCVI_TKOH_0024685.5100.0 / 89.463Review
TkA05G448790LXL04_022173JCVI_TKOH_0024698.684.672 / 100.0Complex
TkA05G448890LXL04_022175JCVI_TKOH_0024694.784.982 / 86.17Probable
TkA05G448900LXL04_022176JCVI_TKOH_00246100.0100.0 / 30.702Review
TkA05G449000LXL04_022178JCVI_TKOH_0024676.299.02 / 37.687Complex
TkA05G449170LXL04_022177JCVI_TKOH_0024692.6100.0 / 38.434Complex
TkA05G449310LXL04_022178JCVI_TKOH_0024699.3100.0 / 100.0Strict
TkA05G449360LXL04_022181JCVI_TKOH_0024699.183.333 / 32.023Review
TkA05G449380LXL04_022183JCVI_TKOH_00246100.032.75 / 31.323Complex
TkA05G449390LXL04_022184JCVI_TKOH_0024698.492.836 / 90.533Review
TkA05G449410LXL04_022185JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G449690LXL04_022187JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G449790LXL04_022189JCVI_TKOH_0024699.799.934 / 97.508Complex
TkA05G449840LXL04_022190JCVI_TKOH_0024699.8100.0 / 100.0Complex
TkA05G449890LXL04_022191JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G449920LXL04_022192JCVI_TKOH_00246100.088.482 / 24.493Review
TkA05G449930LXL04_022193JCVI_TKOH_0024698.7100.0 / 100.0Review
TkA05G450090LXL04_022196JCVI_TKOH_0024699.7100.0 / 100.0Strict
TkA05G450100LXL04_022197JCVI_TKOH_00246100.0100.0 / 57.983Review
TkA05G450110LXL04_022198JCVI_TKOH_0024695.8100.0 / 100.0Complex
TkA05G450320LXL04_022200JCVI_TKOH_0024692.0100.0 / 100.0Probable
TkA05G450340LXL04_022202JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G450370LXL04_022203JCVI_TKOH_0024699.2100.0 / 100.0Complex
TkA05G450410LXL04_022204JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G450450LXL04_022206JCVI_TKOH_0024697.7100.0 / 100.0Strict
TkA05G450730LXL04_022208JCVI_TKOH_0024699.7100.0 / 29.892Review
TkA05G450780LXL04_022209JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G451020LXL04_022211JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G451450LXL04_022215JCVI_TKOH_0024699.7100.0 / 100.0Complex
TkA05G451520LXL04_022211JCVI_TKOH_00246100.0100.0 / 100.0Complex
TkA05G451620LXL04_022215JCVI_TKOH_0024699.7100.0 / 100.0Complex
TkA05G451630LXL04_022214JCVI_TKOH_0024689.249.307 / 18.269Review
TkA05G451650LXL04_022215JCVI_TKOH_0024699.1100.0 / 100.0Complex
TkA05G451780LXL04_022217JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G451800LXL04_022219JCVI_TKOH_0024696.6100.0 / 100.0Strict
TkA05G451840LXL04_022221JCVI_TKOH_0024660.299.32 / 60.709Complex
TkA05G451940LXL04_022224JCVI_TKOH_0024699.145.965 / 45.833Review
TkA05G451950LXL04_022225JCVI_TKOH_0024693.8100.0 / 100.0Probable
TkA05G451960LXL04_022226JCVI_TKOH_0024698.997.017 / 98.07Strict
TkA05G451970LXL04_022227JCVI_TKOH_0024694.097.943 / 72.482Complex
TkA05G452000LXL04_022229JCVI_TKOH_00246100.0100.0 / 100.0Strict
TkA05G452380LXL04_022233JCVI_TKOH_0024699.899.004 / 48.441Review
TkA05G452390LXL04_022233JCVI_TKOH_00246100.099.797 / 47.856Review
TkA05G452420LXL04_022234JCVI_TKOH_0024694.5100.0 / 79.479Complex
TkA05G452430LXL04_022234JCVI_TKOH_0024699.279.394 / 13.646Complex
TkA05G452440LXL04_022235JCVI_TKOH_0024699.8100.0 / 54.113Review
TkA05G452450LXL04_022235JCVI_TKOH_0024696.0100.0 / 38.56Review
TkA05G453030LXL04_022242JCVI_TKOH_0024697.6100.0 / 100.0Strict
TkA05G453140LXL04_022244JCVI_TKOH_0024690.997.074 / 44.143Review
TkA05G453150LXL04_022244JCVI_TKOH_00246100.0100.0 / 27.5Review