Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00193
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 224
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00193

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00193 Chr04 35195530-48013578 Chr08 10359612-21432966 mixed High 200 anchors
Chr04 35195530-48013578 Chr08 10359612-21432966 JCVI_TKOH_00193 · 224 gene pairs TkA04G135640 | LXL04_035349 | 90.7% | multi_source_to_OH1004 | Complex TkA04G135670 | LXL04_035350 | 83.3% | multi_source_to_OH1004 | Complex TkA04G135690 | LXL04_035351 | 94.8% | non_reciprocal_best_hit | Complex TkA04G135800 | LXL04_035352 | 98.0% | multi_source_to_OH1004 | Complex TkA04G136050 | LXL04_035353 | 98.0% | sequence_supported_annotation_or_model_conflict | Review TkA04G136210 | LXL04_035354 | 100.0% | multi_source_to_OH1004 | Complex TkA04G136280 | LXL04_035355 | 100.0% | multi_source_to_OH1004 | Complex TkA04G136300 | LXL04_035356 | 99.7% | multi_source_to_OH1004 | Complex TkA04G136880 | LXL04_035359 | 95.9% | sequence_supported_annotation_or_model_conflict | Review TkA04G136890 | LXL04_035359 | 89.1% | non_reciprocal_best_hit | Complex TkA04G136990 | LXL04_035361 | 50.9% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G137010 | LXL04_035362 | 96.1% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00193 Chr04:35195530-48013578 Chr08:10359612-21432966 mixed 224 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 224 · Showing 1–200 · Page 1/2

TkA04G135640 → LXL04_035349
90.7%
TkA04G135670 → LXL04_035350
83.3%
TkA04G135690 → LXL04_035351
94.8%
TkA04G135800 → LXL04_035352
98.0%
TkA04G136050 → LXL04_035353
98.0%
TkA04G136210 → LXL04_035354
100.0%
TkA04G136280 → LXL04_035355
100.0%
TkA04G136300 → LXL04_035356
99.7%
TkA04G136880 → LXL04_035359
95.9%
TkA04G136890 → LXL04_035359
89.1%
TkA04G136990 → LXL04_035361
50.9%
TkA04G137010 → LXL04_035362
96.1%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA04G135640LXL04_035349JCVI_TKOH_0019390.7100.0 / 99.578Complex
TkA04G135670LXL04_035350JCVI_TKOH_0019383.397.222 / 54.783Complex
TkA04G135690LXL04_035351JCVI_TKOH_0019394.8100.0 / 47.619Complex
TkA04G135800LXL04_035352JCVI_TKOH_0019398.0100.0 / 100.0Complex
TkA04G136050LXL04_035353JCVI_TKOH_0019398.0100.0 / 100.0Review
TkA04G136210LXL04_035354JCVI_TKOH_00193100.0100.0 / 89.046Complex
TkA04G136280LXL04_035355JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G136300LXL04_035356JCVI_TKOH_0019399.791.917 / 82.744Complex
TkA04G136880LXL04_035359JCVI_TKOH_0019395.997.748 / 19.069Review
TkA04G136890LXL04_035359JCVI_TKOH_0019389.199.599 / 44.288Complex
TkA04G136990LXL04_035361JCVI_TKOH_0019350.985.841 / 65.769Review
TkA04G137010LXL04_035362JCVI_TKOH_0019396.1100.0 / 100.0Complex
TkA04G137060LXL04_035363JCVI_TKOH_0019372.9100.0 / 50.542Complex
TkA04G137110LXL04_035374JCVI_TKOH_0019399.2100.0 / 100.0Review
TkA04G137400LXL04_035369JCVI_TKOH_00193100.0100.0 / 89.822Strict
TkA04G137430LXL04_035368JCVI_TKOH_00193100.0100.0 / 95.614Complex
TkA04G138420LXL04_035362JCVI_TKOH_0019396.1100.0 / 100.0Complex
TkA04G138480LXL04_035359JCVI_TKOH_0019363.594.118 / 33.216Complex
TkA04G138490LXL04_035359JCVI_TKOH_0019389.997.525 / 19.069Complex
TkA04G139190LXL04_035356JCVI_TKOH_0019399.291.917 / 82.744Complex
TkA04G139200LXL04_035355JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G139260LXL04_035354JCVI_TKOH_0019399.6100.0 / 89.046Complex
TkA04G139270LXL04_035353JCVI_TKOH_0019399.6100.0 / 100.0Review
TkA04G139310LXL04_035352JCVI_TKOH_0019398.0100.0 / 100.0Complex
TkA04G139470LXL04_035351JCVI_TKOH_0019399.4100.0 / 100.0Strict
TkA04G139490LXL04_035350JCVI_TKOH_0019399.598.03 / 86.522Review
TkA04G139520LXL04_035349JCVI_TKOH_0019398.897.661 / 70.464Complex
TkA04G140590LXL04_035377JCVI_TKOH_0019398.8100.0 / 82.266Strict
TkA04G140630LXL04_035378JCVI_TKOH_0019395.2100.0 / 69.231Review
TkA04G140680LXL04_035379JCVI_TKOH_0019396.8100.0 / 85.021Strict
TkA04G141340LXL04_035346JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G141370LXL04_035344JCVI_TKOH_0019399.6100.0 / 51.554Review
TkA04G141490LXL04_035343JCVI_TKOH_0019344.399.399 / 83.211Complex
TkA04G141660LXL04_035341JCVI_TKOH_0019381.497.917 / 91.512Review
TkA04G141670LXL04_035340JCVI_TKOH_0019399.299.835 / 55.75Review
TkA04G141710LXL04_035339JCVI_TKOH_00193100.049.138 / 3.915Complex
TkA04G141720LXL04_035338JCVI_TKOH_0019398.8100.0 / 100.0Strict
TkA04G141780LXL04_035337JCVI_TKOH_0019399.3100.0 / 100.0Strict
TkA04G141790LXL04_035336JCVI_TKOH_0019398.4100.0 / 100.0Strict
TkA04G141990LXL04_035334JCVI_TKOH_00193100.098.222 / 37.268Review
TkA04G142030LXL04_035329JCVI_TKOH_0019388.3100.0 / 97.354Complex
TkA04G142220LXL04_035328JCVI_TKOH_0019399.6100.0 / 100.0Strict
TkA04G142420LXL04_035325JCVI_TKOH_0019399.6100.0 / 40.12Review
TkA04G142480LXL04_035323JCVI_TKOH_00193100.097.59 / 52.769Review
TkA04G142510LXL04_035322JCVI_TKOH_0019399.798.408 / 47.465Review
TkA04G142530LXL04_035321JCVI_TKOH_0019399.4100.0 / 100.0Strict
TkA04G143180LXL04_035317JCVI_TKOH_0019396.9100.0 / 100.0Strict
TkA04G143290LXL04_035316JCVI_TKOH_0019393.7100.0 / 79.943Probable
TkA04G144010LXL04_035310JCVI_TKOH_0019396.6100.0 / 100.0Strict
TkA04G144060LXL04_035309JCVI_TKOH_0019396.298.256 / 99.388Strict
TkA04G144090LXL04_035308JCVI_TKOH_0019399.4100.0 / 100.0Strict
TkA04G144310LXL04_035305JCVI_TKOH_0019398.6100.0 / 91.521Complex
TkA04G144560LXL04_035300JCVI_TKOH_0019391.5100.0 / 100.0Probable
TkA04G144600LXL04_035299JCVI_TKOH_0019391.1100.0 / 90.094Probable
TkA04G144740LXL04_035297JCVI_TKOH_0019389.8100.0 / 63.043Review
TkA04G144760LXL04_035296JCVI_TKOH_00193100.089.427 / 93.548Review
TkA04G144920LXL04_035294JCVI_TKOH_0019399.4100.0 / 72.477Probable
TkA04G145400LXL04_035290JCVI_TKOH_0019367.678.448 / 47.034Complex
TkA04G145500LXL04_035292JCVI_TKOH_00193100.090.476 / 94.57Complex
TkA04G145590LXL04_035292JCVI_TKOH_0019392.888.559 / 94.57Complex
TkA04G146020LXL04_035292JCVI_TKOH_0019394.287.931 / 93.665Complex
TkA04G146420LXL04_035288JCVI_TKOH_0019376.9100.0 / 54.97Review
TkA04G146540LXL04_035287JCVI_TKOH_0019392.8100.0 / 95.276Probable
TkA04G146550LXL04_035286JCVI_TKOH_0019398.498.058 / 90.504Complex
TkA04G146570LXL04_035285JCVI_TKOH_00193100.0100.0 / 18.625Review
TkA04G146770LXL04_035283JCVI_TKOH_00193100.0100.0 / 25.796Review
TkA04G146780LXL04_035283JCVI_TKOH_0019398.292.974 / 63.217Review
TkA04G146930LXL04_035281JCVI_TKOH_00193100.0100.0 / 100.0Review
TkA04G147300LXL04_035277JCVI_TKOH_0019395.9100.0 / 100.0Review
TkA04G147330LXL04_035276JCVI_TKOH_0019396.1100.0 / 100.0Complex
TkA04G147500LXL04_035275JCVI_TKOH_0019399.580.769 / 39.457Review
TkA04G147670LXL04_035274JCVI_TKOH_00193100.098.319 / 85.401Review
TkA04G147720LXL04_035273JCVI_TKOH_0019395.499.602 / 71.117Probable
TkA04G148390LXL04_035269JCVI_TKOH_0019397.4100.0 / 100.0Strict
TkA04G148510LXL04_035268JCVI_TKOH_0019398.8100.0 / 100.0Strict
TkA04G148520LXL04_035267JCVI_TKOH_0019396.4100.0 / 100.0Strict
TkA04G148890LXL04_035266JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G149090LXL04_035261JCVI_TKOH_0019372.1100.0 / 100.0Complex
TkA04G149380LXL04_035248JCVI_TKOH_00193100.069.63 / 20.614Complex
TkA04G149390LXL04_035247JCVI_TKOH_00193100.0100.0 / 94.872Complex
TkA04G149490LXL04_035244JCVI_TKOH_0019399.899.661 / 100.0Strict
TkA04G149780LXL04_035241JCVI_TKOH_00193100.0100.0 / 100.0Review
TkA04G150440LXL04_035235JCVI_TKOH_00193100.0100.0 / 97.183Complex
TkA04G151120LXL04_035232JCVI_TKOH_0019397.6100.0 / 100.0Strict
TkA04G151560LXL04_035226JCVI_TKOH_0019398.8100.0 / 100.0Review
TkA04G151940LXL04_035224JCVI_TKOH_0019397.3100.0 / 21.807Review
TkA04G152030LXL04_035224JCVI_TKOH_0019398.274.667 / 22.004Complex
TkA04G152150LXL04_035222JCVI_TKOH_0019349.677.703 / 34.835Complex
TkA04G152200LXL04_035220JCVI_TKOH_0019399.6100.0 / 100.0Complex
TkA04G152240LXL04_035218JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G152320LXL04_035224JCVI_TKOH_0019394.660.0 / 18.271Complex
TkA04G152330LXL04_035218JCVI_TKOH_0019399.2100.0 / 37.812Review
TkA04G153130LXL04_035226JCVI_TKOH_0019394.9100.0 / 100.0Complex
TkA04G153310LXL04_035224JCVI_TKOH_0019382.3100.0 / 59.332Review
TkA04G153390LXL04_035222JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G153470LXL04_035220JCVI_TKOH_0019399.574.409 / 67.742Complex
TkA04G153850LXL04_035213JCVI_TKOH_0019391.594.788 / 95.752Review
TkA04G153890LXL04_035213JCVI_TKOH_0019389.6100.0 / 94.118Complex
TkA04G154090LXL04_035209JCVI_TKOH_0019399.7100.0 / 100.0Strict
TkA04G154140LXL04_035207JCVI_TKOH_0019399.297.236 / 100.0Strict
TkA04G154390LXL04_035206JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G154780LXL04_035204JCVI_TKOH_0019396.927.119 / 13.913Complex
TkA04G155740LXL04_035204JCVI_TKOH_0019396.927.119 / 13.913Complex
TkA04G155830LXL04_035203JCVI_TKOH_0019382.398.525 / 47.418Review
TkA04G155840LXL04_035202JCVI_TKOH_0019399.8100.0 / 100.0Strict
TkA04G155850LXL04_035201JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G156010LXL04_035200JCVI_TKOH_0019365.6100.0 / 61.555Complex
TkA04G156340LXL04_035198JCVI_TKOH_0019396.487.907 / 75.29Complex
TkA04G156350LXL04_035197JCVI_TKOH_0019399.696.917 / 60.807Review
TkA04G156680LXL04_035194JCVI_TKOH_0019399.8100.0 / 100.0Strict
TkA04G156690LXL04_035193JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G156800LXL04_035192JCVI_TKOH_0019395.8100.0 / 100.0Strict
TkA04G156810LXL04_035191JCVI_TKOH_0019374.6100.0 / 100.0Review
TkA04G156820LXL04_035190JCVI_TKOH_0019391.294.984 / 75.837Probable
TkA04G157110LXL04_035188JCVI_TKOH_0019396.7100.0 / 74.439Probable
TkA04G157390LXL04_035186JCVI_TKOH_0019399.599.548 / 74.324Probable
TkA04G157400LXL04_035185JCVI_TKOH_0019399.6100.0 / 100.0Complex
TkA04G157660LXL04_035182JCVI_TKOH_00193100.053.14 / 26.829Complex
TkA04G157940LXL04_035180JCVI_TKOH_00193100.0100.0 / 77.313Probable
TkA04G158090LXL04_035179JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G158100LXL04_035178JCVI_TKOH_0019399.8100.0 / 100.0Strict
TkA04G160010LXL04_035175JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G160100LXL04_035173JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G160260LXL04_035172JCVI_TKOH_0019399.9100.0 / 100.0Strict
TkA04G160730LXL04_035171JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G160880LXL04_035170JCVI_TKOH_0019399.7100.0 / 100.0Strict
TkA04G161040LXL04_035168JCVI_TKOH_00193100.090.8 / 65.797Review
TkA04G161180LXL04_035167JCVI_TKOH_0019395.5100.0 / 64.638Review
TkA04G161610LXL04_035164JCVI_TKOH_0019399.597.694 / 97.533Strict
TkA04G161640LXL04_035163JCVI_TKOH_0019396.371.698 / 76.923Probable
TkA04G161900LXL04_035158JCVI_TKOH_00193100.0100.0 / 97.838Strict
TkA04G162130LXL04_035157JCVI_TKOH_0019396.650.877 / 42.647Review
TkA04G162320LXL04_035156JCVI_TKOH_0019397.1100.0 / 100.0Strict
TkA04G163030LXL04_035154JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G163040LXL04_035153JCVI_TKOH_0019399.6100.0 / 100.0Strict
TkA04G163050LXL04_035152JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G163110LXL04_035150JCVI_TKOH_0019351.196.629 / 37.9Review
TkA04G163120LXL04_035149JCVI_TKOH_0019397.297.425 / 39.16Review
TkA04G163160LXL04_035147JCVI_TKOH_0019399.087.527 / 89.648Strict
TkA04G163310LXL04_035144JCVI_TKOH_0019399.697.674 / 64.888Complex
TkA04G163480LXL04_035142JCVI_TKOH_0019399.697.849 / 76.901Probable
TkA04G163680LXL04_035140JCVI_TKOH_0019399.7100.0 / 69.956Review
TkA04G163790LXL04_035138JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G163870LXL04_035137JCVI_TKOH_0019399.8100.0 / 100.0Strict
TkA04G164070LXL04_035136JCVI_TKOH_0019399.6100.0 / 97.619Complex
TkA04G164080LXL04_035135JCVI_TKOH_0019395.599.683 / 72.018Probable
TkA04G164710LXL04_035129JCVI_TKOH_0019399.8100.0 / 84.103Strict
TkA04G164740LXL04_035128JCVI_TKOH_0019394.4100.0 / 90.614Complex
TkA04G164880LXL04_035126JCVI_TKOH_0019393.0100.0 / 100.0Complex
TkA04G165040LXL04_035122JCVI_TKOH_0019399.399.544 / 71.522Probable
TkA04G165060LXL04_035122JCVI_TKOH_0019399.271.598 / 19.804Complex
TkA04G165170LXL04_035120JCVI_TKOH_00193100.0100.0 / 100.0Review
TkA04G165460LXL04_035119JCVI_TKOH_0019399.2100.0 / 100.0Complex
TkA04G165860LXL04_035118JCVI_TKOH_0019399.3100.0 / 100.0Complex
TkA04G165880LXL04_035117JCVI_TKOH_0019378.897.978 / 85.017Complex
TkA04G166090LXL04_035120JCVI_TKOH_0019398.3100.0 / 100.0Review
TkA04G166160LXL04_035119JCVI_TKOH_0019398.8100.0 / 100.0Complex
TkA04G166370LXL04_035118JCVI_TKOH_0019399.8100.0 / 100.0Complex
TkA04G166390LXL04_035117JCVI_TKOH_0019379.097.978 / 85.017Complex
TkA04G166620LXL04_035114JCVI_TKOH_0019399.1100.0 / 100.0Complex
TkA04G166690LXL04_035112JCVI_TKOH_0019395.291.772 / 51.237Review
TkA04G166780LXL04_035111JCVI_TKOH_0019399.6100.0 / 97.473Strict
TkA04G166880LXL04_035110JCVI_TKOH_0019391.055.455 / 53.509Review
TkA04G167090LXL04_035108JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G167550LXL04_035106JCVI_TKOH_00193100.0100.0 / 99.822Complex
TkA04G167620LXL04_035105JCVI_TKOH_0019399.7100.0 / 100.0Strict
TkA04G167660LXL04_035103JCVI_TKOH_0019396.9100.0 / 100.0Strict
TkA04G167830LXL04_035102JCVI_TKOH_0019394.499.866 / 87.871Complex
TkA04G167960LXL04_035101JCVI_TKOH_0019399.8100.0 / 99.326Strict
TkA04G168590LXL04_035098JCVI_TKOH_0019395.338.053 / 27.922Complex
TkA04G168640LXL04_035097JCVI_TKOH_0019385.6100.0 / 100.0Review
TkA04G169090LXL04_035084JCVI_TKOH_0019398.8100.0 / 100.0Complex
TkA04G169140LXL04_035085JCVI_TKOH_0019398.2100.0 / 95.69Complex
TkA04G169190LXL04_035086JCVI_TKOH_0019397.2100.0 / 100.0Strict
TkA04G169480LXL04_035089JCVI_TKOH_0019398.399.587 / 96.748Strict
TkA04G169570LXL04_035090JCVI_TKOH_0019397.1100.0 / 100.0Strict
TkA04G169740LXL04_035092JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G169900LXL04_035093JCVI_TKOH_0019398.8100.0 / 87.788Strict
TkA04G169950LXL04_035094JCVI_TKOH_0019399.9100.0 / 100.0Review
TkA04G170210LXL04_035095JCVI_TKOH_0019399.6100.0 / 100.0Strict
TkA04G170660LXL04_035082JCVI_TKOH_0019399.3100.0 / 100.0Strict
TkA04G170670LXL04_035081JCVI_TKOH_0019399.7100.0 / 71.938Review
TkA04G170740LXL04_035080JCVI_TKOH_0019378.775.177 / 90.37Complex
TkA04G170750LXL04_035079JCVI_TKOH_00193100.0100.0 / 100.0Strict
TkA04G171500LXL04_035075JCVI_TKOH_00193100.0100.0 / 96.552Strict
TkA04G171560LXL04_035070JCVI_TKOH_0019399.3100.0 / 93.706Strict
TkA04G171590LXL04_035068JCVI_TKOH_0019399.5100.0 / 100.0Review
TkA04G171900LXL04_035064JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G171910LXL04_035063JCVI_TKOH_0019399.482.368 / 64.803Review
TkA04G171940LXL04_035062JCVI_TKOH_0019377.2100.0 / 100.0Review
TkA04G171960LXL04_035061JCVI_TKOH_0019399.2100.0 / 100.0Strict
TkA04G172130LXL04_035060JCVI_TKOH_0019399.8100.0 / 98.821Strict
TkA04G172240LXL04_035059JCVI_TKOH_0019399.4100.0 / 100.0Strict
TkA04G172430LXL04_035058JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G173400LXL04_035058JCVI_TKOH_0019379.597.004 / 94.526Complex
TkA04G173790LXL04_035053JCVI_TKOH_0019399.793.569 / 97.651Strict
TkA04G174700LXL04_035052JCVI_TKOH_0019396.9100.0 / 100.0Complex
TkA04G174820LXL04_035052JCVI_TKOH_0019397.2100.0 / 100.0Complex
TkA04G175030LXL04_035050JCVI_TKOH_00193100.0100.0 / 100.0Complex
TkA04G175040LXL04_035049JCVI_TKOH_0019399.8100.0 / 100.0Strict