LXL04_035321 | RubberDandelionOmics

Gene overview

LXL04_035321

Reference: OH-1004 Chr: Chr08 Coordinates: 20306531-20308448 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1623 bp · LXL04_035321|LXL04_035321|OH1004|cDNA

ATGACCCAAACAGGTCCTCGGAGAATCCAGAACTCCGGCCTGGATGAAGAATCGCGGGAACAATCCCAATCTTCTTCAACAGGCATGAGACTCATTGTGCCCTTGCAAGGGATAGTTCAAGGTAGGGGTGGCTTAATTTTAGGTTCAGTAATTCCTTGCGCGATGTTCTACCTCCTCCAATTCTACCTCAAACGACGTCGTTCCCCGCCGAAACCGCCGCAAGAGCAGACCTCGAACCCTCCGTCTCCGACTTCTTCGAC...

CDS

Download CDS FASTA

1623 bp · LXL04_035321|LXL04_035321|OH1004|CDS

ATGACCCAAACAGGTCCTCGGAGAATCCAGAACTCCGGCCTGGATGAAGAATCGCGGGAACAATCCCAATCTTCTTCAACAGGCATGAGACTCATTGTGCCCTTGCAAGGGATAGTTCAAGGTAGGGGTGGCTTAATTTTAGGTTCAGTAATTCCTTGCGCGATGTTCTACCTCCTCCAATTCTACCTCAAACGACGTCGTTCCCCGCCGAAACCGCCGCAAGAGCAGACCTCGAACCCTCCGTCTCCGACTTCTTCGAC...

Protein

Download Protein FASTA

540 aa · LXL04_035321|LXL04_035321|OH1004|PROTEIN

MTQTGPRRIQNSGLDEESREQSQSSSTGMRLIVPLQGIVQGRGGLILGSVIPCAMFYLLQFYLKRRRSPPKPPQEQTSNPPSPTSSTSNLPELSRSASRSNLLLSRGSIVRPHVSARVHSIAKSNDSPYYIGLDRASEDPYDRVNNPNGVIQLGLAENRLTLDLIEKWITEKLNDSILGEEGLNVSGIATYQPFDGLMELKVAMAGFMSQVVGKSVSFDPSQIVLTSGATSAIEILCFALADQGNAFLIPAPYYPGFDRD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035321`
TK1151 ID	TkA04G142530
OH-1004 ID	LXL04_035321
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035321

Location Chr08:20306531-20308448 (+)

Description Similar to ACS12: Probable aminotransferase ACS12

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51690`	Probable aminotransferase.	No verified direct reference in this release
`At1g62960`	Probable aminotransferase.	No verified direct reference in this release
`At3g49700`	1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.	No verified direct reference in this release
`At4g37770`	1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0130400`	Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants (By similarity).	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm.2016 · DOI: 10.1104/pp.15.01811

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035321 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006417 regulation of translation Biological Process

GO:0006520 amino acid metabolic process Biological Process

GO:0009693 ethylene biosynthetic process Biological Process

GO:0009835 fruit ripening Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0033097 amyloplast membrane Cellular Component

GO:0008483 transaminase activity Molecular Function

GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G62960

ath:AT3G49700

ath:AT4G37770

ath:AT5G51690

dosa:Os06g0130400

osa:4340002

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.260

Rank 1 · LXL04_035321 · OH-1004

Mitochondrion0.251

Rank 2 · LXL04_035321 · OH-1004

Peroxisome0.228

Rank 3 · LXL04_035321 · OH-1004

Cytoplasm0.117

Rank 4 · LXL04_035321 · OH-1004

Endoplasmic reticulum0.088

Rank 5 · LXL04_035321 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155.28Aminotran_1_2151-529 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035321	`PF00155.28`	Aminotran_1_2	151	529	3.4e-79	267.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYY0`	Arabidopsis thaliana	Probable aminotransferase ACS12	58.398%	Swiss-Prot	strong database homology
`Q9LQ10`	Arabidopsis thaliana	Probable aminotransferase ACS10	58.240%	Swiss-Prot	strong database homology
`Q9M2Y8`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate synthase 9	46.636%	Swiss-Prot	moderate database homology
`Q9T065`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate synthase 8	45.540%	Swiss-Prot	moderate database homology
`Q9SNN8`	Oryza sativa subsp. japonica	1-aminocyclopropane-1-carboxylate synthase 6	56.464%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card