LXL04_035201 | RubberDandelionOmics

Gene overview

LXL04_035201

Reference: OH-1004 Chr: Chr08 Coordinates: 17392777-17394020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_035201|LXL04_035201|OH1004|cDNA

ATGTTTTTGCGGAGGTTTGCTCGGCCATCATCATTGATGATGATGGCCAAAGTGAAGGAAACAACGGGGATCGTTGGTCTCGATGTGGTCCCTAATGCAAGGGACGTGCTAATTGGTCTATATAACAAAACCCTAAACGAGATCCAGCGTGTACCCGAGGACGAGGGCTATCGCAAGGCCGTTGAGAGCTTCACGCGCCACCGATTGAAGGTATGCCAAGAGGAAGAAGATTGGGAAGCCATTGAGAAACGACTTGGTTG...

CDS

Download CDS FASTA

525 bp · LXL04_035201|LXL04_035201|OH1004|CDS

ATGTTTTTGCGGAGGTTTGCTCGGCCATCATCATTGATGATGATGGCCAAAGTGAAGGAAACAACGGGGATCGTTGGTCTCGATGTGGTCCCTAATGCAAGGGACGTGCTAATTGGTCTATATAACAAAACCCTAAACGAGATCCAGCGTGTACCCGAGGACGAGGGCTATCGCAAGGCCGTTGAGAGCTTCACGCGCCACCGATTGAAGGTATGCCAAGAGGAAGAAGATTGGGAAGCCATTGAGAAACGACTTGGTTG...

Protein

Download Protein FASTA

174 aa · LXL04_035201|LXL04_035201|OH1004|PROTEIN

MFLRRFARPSSLMMMAKVKETTGIVGLDVVPNARDVLIGLYNKTLNEIQRVPEDEGYRKAVESFTRHRLKVCQEEEDWEAIEKRLGCGQVEELIEEAQDELKLIDKMIEWDPWGVPDDYECEVVENDAPVPKHVPLHRPGPLPEEFYKTLDAIMTGKLEPPAKKDESAIPASSQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035201`
TK1151 ID	TkA04G155850
OH-1004 ID	LXL04_035201
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035201

Location Chr08:17392777-17394020 (-)

Description Similar to At5g52840: Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52840`	Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035201 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009060 aerobic respiration Biological Process

GO:0009853 photorespiration Biological Process

GO:0022904 respiratory electron transport chain Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

KEGG gene cross-reference

ath:AT5G52840

bta:327714

ddi:DDB_G0272394

mmu:68202

rno:25488

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.956

Rank 1 · LXL04_035201 · OH-1004

Nucleus0.062

Rank 2 · LXL04_035201 · OH-1004

Cytoplasm0.054

Rank 3 · LXL04_035201 · OH-1004

Cell membrane0.017

Rank 4 · LXL04_035201 · OH-1004

Extracellular0.009

Rank 5 · LXL04_035201 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04716.20ETC_C1_NDUFA526-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035201	`PF04716.20`	ETC_C1_NDUFA5	26	92	4.5e-28	97.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLX7`	Arabidopsis thaliana	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial	78.528%	Swiss-Prot	strong database homology

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