Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00098
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 340
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00098

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00098 Chr02 147743073-157773519 Chr03 679290-10389123 mixed High 200 anchors
Chr02 147743073-157773519 Chr03 679290-10389123 JCVI_TKOH_00098 · 340 gene pairs TkA02G572230 | LXL04_012306 | 98.0% | non_reciprocal_best_hit | Complex TkA02G572440 | LXL04_012301 | 91.4% | non_reciprocal_best_hit | Complex TkA02G572500 | LXL04_012301 | 90.6% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G572510 | LXL04_012295 | 90.7% | RBH_sequence_supported | Probable TkA02G572520 | LXL04_012299 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G572540 | LXL04_012296 | 96.0% | multi_source_to_OH1004 | Complex TkA02G572570 | LXL04_012295 | 89.1% | non_reciprocal_best_hit | Complex TkA02G572670 | LXL04_012294 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G572680 | LXL04_012296 | 95.0% | sequence_supported_annotation_or_model_conflict | Review TkA02G572700 | LXL04_012292 | 97.3% | sequence_supported_annotation_or_model_conflict | Review TkA02G572940 | LXL04_012285 | 92.2% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G572960 | LXL04_012285 | 85.1% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00098 Chr02:147743073-157773519 Chr03:679290-10389123 mixed 340 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 340 · Showing 1–200 · Page 1/2

TkA02G572230 → LXL04_012306
98.0%
TkA02G572440 → LXL04_012301
91.4%
TkA02G572500 → LXL04_012301
90.6%
TkA02G572510 → LXL04_012295
90.7%
TkA02G572520 → LXL04_012299
100.0%
TkA02G572540 → LXL04_012296
96.0%
TkA02G572570 → LXL04_012295
89.1%
TkA02G572670 → LXL04_012294
100.0%
TkA02G572680 → LXL04_012296
95.0%
TkA02G572700 → LXL04_012292
97.3%
TkA02G572940 → LXL04_012285
92.2%
TkA02G572960 → LXL04_012285
85.1%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA02G572230LXL04_012306JCVI_TKOH_0009898.080.392 / 46.171Complex
TkA02G572440LXL04_012301JCVI_TKOH_0009891.497.846 / 29.196Complex
TkA02G572500LXL04_012301JCVI_TKOH_0009890.697.746 / 31.429Review
TkA02G572510LXL04_012295JCVI_TKOH_0009890.795.38 / 96.944Probable
TkA02G572520LXL04_012299JCVI_TKOH_00098100.0100.0 / 99.342Review
TkA02G572540LXL04_012296JCVI_TKOH_0009896.076.834 / 82.917Complex
TkA02G572570LXL04_012295JCVI_TKOH_0009889.187.143 / 35.556Complex
TkA02G572670LXL04_012294JCVI_TKOH_00098100.0100.0 / 99.342Review
TkA02G572680LXL04_012296JCVI_TKOH_0009895.0100.0 / 100.0Review
TkA02G572700LXL04_012292JCVI_TKOH_0009897.392.754 / 18.865Review
TkA02G572940LXL04_012285JCVI_TKOH_0009892.299.274 / 74.864Review
TkA02G572960LXL04_012285JCVI_TKOH_0009885.198.955 / 54.611Complex
TkA02G573080LXL04_012287JCVI_TKOH_0009883.736.441 / 97.727Review
TkA02G573270LXL04_012285JCVI_TKOH_0009892.556.684 / 19.168Complex
TkA02G573310LXL04_012289JCVI_TKOH_0009888.399.251 / 35.27Complex
TkA02G573340LXL04_012321JCVI_TKOH_0009870.899.501 / 27.921Complex
TkA02G573510LXL04_012288JCVI_TKOH_0009892.268.99 / 39.919Complex
TkA02G573630LXL04_012321JCVI_TKOH_0009864.159.542 / 10.951Complex
TkA02G573700LXL04_012289JCVI_TKOH_0009884.7100.0 / 28.077Complex
TkA02G573800LXL04_012289JCVI_TKOH_0009892.598.361 / 41.909Complex
TkA02G574020LXL04_012288JCVI_TKOH_0009882.3100.0 / 100.0Complex
TkA02G574080LXL04_012289JCVI_TKOH_0009892.474.468 / 13.555Complex
TkA02G575610LXL04_012285JCVI_TKOH_0009885.2100.0 / 19.53Complex
TkA02G575680LXL04_012288JCVI_TKOH_0009885.098.85 / 100.0Complex
TkA02G576100LXL04_012282JCVI_TKOH_0009861.7100.0 / 100.0Review
TkA02G576120LXL04_012281JCVI_TKOH_0009887.0100.0 / 100.0Review
TkA02G576140LXL04_012280JCVI_TKOH_0009899.6100.0 / 100.0Complex
TkA02G576520LXL04_012278JCVI_TKOH_0009886.9100.0 / 100.0Review
TkA02G576820LXL04_012276JCVI_TKOH_0009859.6100.0 / 96.809Review
TkA02G576830LXL04_012275JCVI_TKOH_0009899.7100.0 / 100.0Strict
TkA02G576840LXL04_012274JCVI_TKOH_0009898.699.303 / 50.712Review
TkA02G576850LXL04_012273JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G576890LXL04_012270JCVI_TKOH_00098100.085.227 / 34.325Review
TkA02G577110LXL04_012269JCVI_TKOH_00098100.0100.0 / 20.721Review
TkA02G577120LXL04_012269JCVI_TKOH_0009889.790.312 / 48.048Review
TkA02G577750LXL04_012264JCVI_TKOH_00098100.0100.0 / 64.506Review
TkA02G577770LXL04_012263JCVI_TKOH_0009857.5100.0 / 100.0Complex
TkA02G577860LXL04_012261JCVI_TKOH_0009897.6100.0 / 100.0Strict
TkA02G577880LXL04_012260JCVI_TKOH_0009899.8100.0 / 100.0Strict
TkA02G577910LXL04_012259JCVI_TKOH_0009899.7100.0 / 100.0Complex
TkA02G578210LXL04_012257JCVI_TKOH_0009899.285.808 / 100.0Strict
TkA02G578220LXL04_012256JCVI_TKOH_0009894.676.131 / 85.014Complex
TkA02G578310LXL04_012255JCVI_TKOH_0009892.8100.0 / 86.842Complex
TkA02G578320LXL04_012253JCVI_TKOH_0009897.293.382 / 70.538Probable
TkA02G578340LXL04_012252JCVI_TKOH_00098100.099.531 / 85.141Strict
TkA02G578550LXL04_012251JCVI_TKOH_0009898.098.364 / 93.706Strict
TkA02G578560LXL04_012250JCVI_TKOH_0009898.3100.0 / 100.0Strict
TkA02G578570LXL04_012249JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G578600LXL04_012248JCVI_TKOH_0009898.8100.0 / 100.0Strict
TkA02G578610LXL04_012247JCVI_TKOH_0009899.389.241 / 72.308Probable
TkA02G578620LXL04_012246JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G578980LXL04_012240JCVI_TKOH_0009861.790.586 / 43.665Review
TkA02G579000LXL04_012243JCVI_TKOH_0009877.095.91 / 87.21Complex
TkA02G579010LXL04_012242JCVI_TKOH_0009893.677.778 / 34.94Complex
TkA02G579020LXL04_012243JCVI_TKOH_0009873.695.676 / 53.753Complex
TkA02G579150LXL04_012240JCVI_TKOH_0009844.473.898 / 34.001Complex
TkA02G579160LXL04_012240JCVI_TKOH_0009891.662.687 / 18.754Complex
TkA02G579170LXL04_012240JCVI_TKOH_0009894.262.215 / 13.672Complex
TkA02G579220LXL04_012243JCVI_TKOH_0009854.742.941 / 13.902Complex
TkA02G579390LXL04_012239JCVI_TKOH_0009899.2100.0 / 100.0Complex
TkA02G579410LXL04_012237JCVI_TKOH_0009899.1100.0 / 100.0Complex
TkA02G579420LXL04_012236JCVI_TKOH_0009895.3100.0 / 67.298Complex
TkA02G579440LXL04_012235JCVI_TKOH_0009899.1100.0 / 100.0Strict
TkA02G579480LXL04_012232JCVI_TKOH_0009899.5100.0 / 100.0Strict
TkA02G580090LXL04_012231JCVI_TKOH_0009899.9100.0 / 100.0Strict
TkA02G580220LXL04_012229JCVI_TKOH_0009898.4100.0 / 100.0Review
TkA02G580240LXL04_012228JCVI_TKOH_0009899.797.759 / 80.974Strict
TkA02G580340LXL04_012227JCVI_TKOH_0009895.597.492 / 100.0Strict
TkA02G580410LXL04_012226JCVI_TKOH_0009899.6100.0 / 100.0Strict
TkA02G580490LXL04_012224JCVI_TKOH_0009899.8100.0 / 100.0Complex
TkA02G580510LXL04_012223JCVI_TKOH_0009899.6100.0 / 100.0Strict
TkA02G580720LXL04_012220JCVI_TKOH_0009899.699.859 / 41.588Review
TkA02G580740LXL04_012219JCVI_TKOH_0009898.3100.0 / 100.0Strict
TkA02G580800LXL04_012218JCVI_TKOH_0009894.9100.0 / 100.0Complex
TkA02G580850LXL04_012217JCVI_TKOH_0009893.7100.0 / 100.0Probable
TkA02G580940LXL04_012216JCVI_TKOH_0009885.6100.0 / 100.0Review
TkA02G581000LXL04_012215JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G581030LXL04_012214JCVI_TKOH_00098100.0100.0 / 99.321Strict
TkA02G581640LXL04_012211JCVI_TKOH_0009899.4100.0 / 100.0Strict
TkA02G581650LXL04_012210JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G581690LXL04_012209JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G581770LXL04_012207JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G581820LXL04_012205JCVI_TKOH_0009899.087.879 / 100.0Complex
TkA02G581930LXL04_012203JCVI_TKOH_0009899.8100.0 / 100.0Strict
TkA02G581950LXL04_012202JCVI_TKOH_0009899.8100.0 / 100.0Strict
TkA02G581960LXL04_012200JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G582230LXL04_012197JCVI_TKOH_0009898.296.801 / 100.0Strict
TkA02G582240LXL04_012198JCVI_TKOH_0009899.581.057 / 84.722Complex
TkA02G582550LXL04_012192JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G582770LXL04_012189JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G582790LXL04_012188JCVI_TKOH_0009899.8100.0 / 100.0Complex
TkA02G582800LXL04_012187JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G582820LXL04_012186JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G582920LXL04_012185JCVI_TKOH_00098100.0100.0 / 65.726Complex
TkA02G582930LXL04_012184JCVI_TKOH_0009899.6100.0 / 100.0Strict
TkA02G583040LXL04_012183JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G583280LXL04_012180JCVI_TKOH_0009899.383.968 / 78.612Probable
TkA02G583300LXL04_012179JCVI_TKOH_0009899.4100.0 / 100.0Complex
TkA02G583630LXL04_012178JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G583640LXL04_012177JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G583660LXL04_012175JCVI_TKOH_0009899.5100.0 / 78.099Probable
TkA02G583670LXL04_012173JCVI_TKOH_0009896.1100.0 / 100.0Complex
TkA02G583740LXL04_012172JCVI_TKOH_0009899.1100.0 / 100.0Strict
TkA02G584000LXL04_012170JCVI_TKOH_0009899.297.727 / 100.0Strict
TkA02G584030LXL04_012168JCVI_TKOH_0009893.7100.0 / 98.27Complex
TkA02G584330LXL04_012167JCVI_TKOH_0009899.7100.0 / 100.0Strict
TkA02G584340LXL04_012166JCVI_TKOH_0009899.9100.0 / 100.0Strict
TkA02G584690LXL04_012164JCVI_TKOH_0009899.6100.0 / 76.331Probable
TkA02G584700LXL04_012163JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G584860LXL04_012161JCVI_TKOH_0009899.682.876 / 93.273Strict
TkA02G584870LXL04_012160JCVI_TKOH_0009899.8100.0 / 100.0Strict
TkA02G584890LXL04_012159JCVI_TKOH_0009898.7100.0 / 100.0Complex
TkA02G585060LXL04_012156JCVI_TKOH_0009899.7100.0 / 100.0Strict
TkA02G585080LXL04_012155JCVI_TKOH_0009894.2100.0 / 100.0Probable
TkA02G585100LXL04_012154JCVI_TKOH_0009899.3100.0 / 100.0Strict
TkA02G585130LXL04_012153JCVI_TKOH_0009899.6100.0 / 100.0Strict
TkA02G585150LXL04_012152JCVI_TKOH_00098100.0100.0 / 67.616Review
TkA02G585220LXL04_012151JCVI_TKOH_0009884.3100.0 / 100.0Review
TkA02G585250LXL04_012150JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G585270LXL04_012149JCVI_TKOH_0009863.335.252 / 14.08Complex
TkA02G585470LXL04_012133JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G585550LXL04_012122JCVI_TKOH_0009884.4100.0 / 100.0Complex
TkA02G585630LXL04_012120JCVI_TKOH_0009885.569.892 / 36.686Review
TkA02G585690LXL04_012115JCVI_TKOH_0009834.142.54 / 48.25Complex
TkA02G586000LXL04_012117JCVI_TKOH_00098100.0100.0 / 100.0Review
TkA02G586140LXL04_012115JCVI_TKOH_00098100.0100.0 / 61.75Complex
TkA02G586270LXL04_012130JCVI_TKOH_0009898.497.638 / 82.667Strict
TkA02G586330LXL04_012126JCVI_TKOH_0009896.799.668 / 61.814Complex
TkA02G586350LXL04_012124JCVI_TKOH_00098100.0100.0 / 88.73Strict
TkA02G586370LXL04_012123JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G586390LXL04_012122JCVI_TKOH_0009893.6100.0 / 100.0Complex
TkA02G586430LXL04_012121JCVI_TKOH_0009899.5100.0 / 100.0Strict
TkA02G586460LXL04_012120JCVI_TKOH_0009891.161.585 / 14.164Complex
TkA02G586470LXL04_012120JCVI_TKOH_0009898.561.321 / 9.207Complex
TkA02G586540LXL04_012115JCVI_TKOH_0009834.566.984 / 48.25Complex
TkA02G586550LXL04_012115JCVI_TKOH_0009864.061.983 / 17.0Complex
TkA02G586710LXL04_012118JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G586730LXL04_012117JCVI_TKOH_00098100.0100.0 / 100.0Review
TkA02G586830LXL04_012115JCVI_TKOH_0009896.091.411 / 37.25Review
TkA02G586850LXL04_012115JCVI_TKOH_0009882.692.157 / 99.25Complex
TkA02G586930LXL04_012114JCVI_TKOH_0009898.9100.0 / 90.643Complex
TkA02G586940LXL04_012113JCVI_TKOH_0009899.2100.0 / 100.0Complex
TkA02G587010LXL04_012112JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G587190LXL04_012105JCVI_TKOH_0009898.896.532 / 47.042Review
TkA02G587300LXL04_012103JCVI_TKOH_0009896.9100.0 / 43.631Review
TkA02G587410LXL04_012103JCVI_TKOH_0009889.484.685 / 56.098Complex
TkA02G587500LXL04_012101JCVI_TKOH_0009849.3100.0 / 77.234Review
TkA02G587510LXL04_012099JCVI_TKOH_00098100.0100.0 / 54.724Review
TkA02G587610LXL04_012098JCVI_TKOH_0009877.4100.0 / 100.0Review
TkA02G587640LXL04_012097JCVI_TKOH_00098100.0100.0 / 21.401Review
TkA02G587780LXL04_012096JCVI_TKOH_0009860.7100.0 / 91.9Review
TkA02G587840LXL04_012095JCVI_TKOH_0009893.7100.0 / 69.474Review
TkA02G587860LXL04_012094JCVI_TKOH_0009899.2100.0 / 100.0Strict
TkA02G588030LXL04_012091JCVI_TKOH_0009890.796.575 / 62.241Review
TkA02G588140LXL04_012089JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G588160LXL04_012088JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G588170LXL04_012087JCVI_TKOH_0009899.498.99 / 87.657Strict
TkA02G588190LXL04_012086JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G588200LXL04_012085JCVI_TKOH_0009899.8100.0 / 68.013Review
TkA02G588310LXL04_012083JCVI_TKOH_0009888.599.115 / 88.153Review
TkA02G588420LXL04_012080JCVI_TKOH_0009886.9100.0 / 100.0Complex
TkA02G588530LXL04_012079JCVI_TKOH_00098100.099.558 / 84.906Complex
TkA02G588570LXL04_012078JCVI_TKOH_0009867.427.922 / 5.284Complex
TkA02G588610LXL04_012078JCVI_TKOH_0009882.090.062 / 22.061Complex
TkA02G588810LXL04_012075JCVI_TKOH_0009899.4100.0 / 100.0Strict
TkA02G588820LXL04_012076JCVI_TKOH_0009899.098.095 / 83.065Strict
TkA02G589000LXL04_012074JCVI_TKOH_0009894.2100.0 / 96.988Probable
TkA02G589010LXL04_012073JCVI_TKOH_00098100.085.0 / 99.655Strict
TkA02G589020LXL04_012071JCVI_TKOH_0009893.498.413 / 53.721Review
TkA02G589030LXL04_012071JCVI_TKOH_0009899.299.219 / 23.049Review
TkA02G589040LXL04_012070JCVI_TKOH_0009897.6100.0 / 100.0Complex
TkA02G589270LXL04_012070JCVI_TKOH_0009883.3100.0 / 100.0Complex
TkA02G589280LXL04_012067JCVI_TKOH_0009894.5100.0 / 100.0Probable
TkA02G589310LXL04_012066JCVI_TKOH_00098100.0100.0 / 100.0Strict
TkA02G589400LXL04_012065JCVI_TKOH_0009884.7100.0 / 100.0Complex
TkA02G589410LXL04_012070JCVI_TKOH_0009870.8100.0 / 100.0Complex
TkA02G589460LXL04_012063JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G589940LXL04_012061JCVI_TKOH_0009898.379.787 / 73.71Complex
TkA02G590010LXL04_012061JCVI_TKOH_0009892.790.361 / 73.71Complex
TkA02G590050LXL04_012061JCVI_TKOH_0009892.9100.0 / 41.769Complex
TkA02G590070LXL04_012056JCVI_TKOH_0009872.492.237 / 45.431Review
TkA02G590080LXL04_012056JCVI_TKOH_0009898.196.049 / 26.985Review
TkA02G590090LXL04_012055JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G590100LXL04_012054JCVI_TKOH_0009892.4100.0 / 100.0Complex
TkA02G590110LXL04_012053JCVI_TKOH_00098100.0100.0 / 100.0Review
TkA02G590150LXL04_012051JCVI_TKOH_0009898.1100.0 / 100.0Strict
TkA02G590250LXL04_012049JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G590320LXL04_012044JCVI_TKOH_0009899.6100.0 / 100.0Strict
TkA02G590900LXL04_012042JCVI_TKOH_0009894.8100.0 / 53.043Review
TkA02G591080LXL04_012040JCVI_TKOH_0009878.1100.0 / 100.0Review
TkA02G591090LXL04_012039JCVI_TKOH_0009899.7100.0 / 100.0Strict
TkA02G591180LXL04_012038JCVI_TKOH_00098100.095.879 / 71.224Probable
TkA02G591590LXL04_012034JCVI_TKOH_0009898.399.423 / 75.806Probable
TkA02G591690LXL04_012033JCVI_TKOH_0009899.3100.0 / 100.0Strict
TkA02G591820LXL04_012031JCVI_TKOH_00098100.099.383 / 90.619Complex
TkA02G591830LXL04_012030JCVI_TKOH_0009891.7100.0 / 100.0Complex
TkA02G591900LXL04_012029JCVI_TKOH_0009899.0100.0 / 100.0Strict
TkA02G591920LXL04_012028JCVI_TKOH_00098100.0100.0 / 100.0Complex
TkA02G592170LXL04_012024JCVI_TKOH_0009899.2100.0 / 100.0Strict
TkA02G592190LXL04_012023JCVI_TKOH_0009897.199.031 / 69.252Review