Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00078

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 111

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00078

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00078 Chr02 25461282-31048994 Chr03 128902093-135615212 mixed High 111 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00078`	Chr02:25461282-31048994	Chr03:128902093-135615212	mixed	111	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 111 · Showing 1–111 · Page 1/1

Download All Anchors TSV

TkA02G097720 → LXL04_016850

98.7%

TkA02G097930 → LXL04_016848

97.7%

TkA02G097940 → LXL04_016847

98.1%

TkA02G097950 → LXL04_016846

88.3%

TkA02G097960 → LXL04_016844

91.4%

TkA02G098000 → LXL04_016843

88.5%

TkA02G098270 → LXL04_016842

88.9%

TkA02G098280 → LXL04_016841

95.7%

TkA02G098420 → LXL04_016834

66.5%

TkA02G098880 → LXL04_016839

74.9%

TkA02G098890 → LXL04_016837

84.3%

TkA02G099290 → LXL04_016834

76.9%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G097720`	`LXL04_016850`	`JCVI_TKOH_00078`	98.7	100.0 / 96.11	Complex
`TkA02G097930`	`LXL04_016848`	`JCVI_TKOH_00078`	97.7	90.779 / 88.508	Strict
`TkA02G097940`	`LXL04_016847`	`JCVI_TKOH_00078`	98.1	100.0 / 100.0	Strict
`TkA02G097950`	`LXL04_016846`	`JCVI_TKOH_00078`	88.3	100.0 / 68.504	Review
`TkA02G097960`	`LXL04_016844`	`JCVI_TKOH_00078`	91.4	100.0 / 100.0	Probable
`TkA02G098000`	`LXL04_016843`	`JCVI_TKOH_00078`	88.5	100.0 / 100.0	Review
`TkA02G098270`	`LXL04_016842`	`JCVI_TKOH_00078`	88.9	100.0 / 100.0	Review
`TkA02G098280`	`LXL04_016841`	`JCVI_TKOH_00078`	95.7	100.0 / 100.0	Strict
`TkA02G098420`	`LXL04_016834`	`JCVI_TKOH_00078`	66.5	99.459 / 98.556	Review
`TkA02G098880`	`LXL04_016839`	`JCVI_TKOH_00078`	74.9	100.0 / 89.973	Complex
`TkA02G098890`	`LXL04_016837`	`JCVI_TKOH_00078`	84.3	100.0 / 90.714	Review
`TkA02G099290`	`LXL04_016834`	`JCVI_TKOH_00078`	76.9	94.737 / 14.173	Complex
`TkA02G099390`	`LXL04_016839`	`JCVI_TKOH_00078`	73.4	99.163 / 31.551	Complex
`TkA02G099440`	`LXL04_016834`	`JCVI_TKOH_00078`	48.7	100.0 / 91.601	Complex
`TkA02G099580`	`LXL04_016833`	`JCVI_TKOH_00078`	94.7	100.0 / 94.906	Probable
`TkA02G099600`	`LXL04_016832`	`JCVI_TKOH_00078`	92.1	100.0 / 100.0	Probable
`TkA02G099630`	`LXL04_016831`	`JCVI_TKOH_00078`	99.4	100.0 / 100.0	Strict
`TkA02G099660`	`LXL04_016830`	`JCVI_TKOH_00078`	83.8	100.0 / 99.647	Complex
`TkA02G099830`	`LXL04_016829`	`JCVI_TKOH_00078`	99.1	100.0 / 100.0	Strict
`TkA02G100220`	`LXL04_016810`	`JCVI_TKOH_00078`	97.0	100.0 / 100.0	Strict
`TkA02G100520`	`LXL04_016809`	`JCVI_TKOH_00078`	90.3	96.782 / 94.08	Complex
`TkA02G101430`	`LXL04_016809`	`JCVI_TKOH_00078`	74.4	91.892 / 84.144	Complex
`TkA02G101450`	`LXL04_016802`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G101530`	`LXL04_016799`	`JCVI_TKOH_00078`	86.8	100.0 / 100.0	Complex
`TkA02G101840`	`LXL04_016798`	`JCVI_TKOH_00078`	93.8	88.136 / 68.861	Review
`TkA02G101930`	`LXL04_016797`	`JCVI_TKOH_00078`	95.5	100.0 / 100.0	Strict
`TkA02G102100`	`LXL04_016795`	`JCVI_TKOH_00078`	98.8	100.0 / 61.639	Review
`TkA02G102480`	`LXL04_016791`	`JCVI_TKOH_00078`	100.0	99.55 / 68.421	Complex
`TkA02G102490`	`LXL04_016790`	`JCVI_TKOH_00078`	73.9	97.719 / 33.333	Complex
`TkA02G102500`	`LXL04_016789`	`JCVI_TKOH_00078`	94.0	69.271 / 21.113	Review
`TkA02G102610`	`LXL04_016788`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G103260`	`LXL04_016762`	`JCVI_TKOH_00078`	66.2	92.727 / 49.655	Complex
`TkA02G103270`	`LXL04_016783`	`JCVI_TKOH_00078`	100.0	100.0 / 95.752	Strict
`TkA02G103280`	`LXL04_016782`	`JCVI_TKOH_00078`	97.7	100.0 / 68.993	Complex
`TkA02G103360`	`LXL04_016781`	`JCVI_TKOH_00078`	86.0	100.0 / 64.802	Review
`TkA02G103380`	`LXL04_016780`	`JCVI_TKOH_00078`	99.5	100.0 / 100.0	Complex
`TkA02G104250`	`LXL04_016773`	`JCVI_TKOH_00078`	99.4	100.0 / 100.0	Complex
`TkA02G104260`	`LXL04_016772`	`JCVI_TKOH_00078`	99.7	100.0 / 100.0	Strict
`TkA02G104370`	`LXL04_016771`	`JCVI_TKOH_00078`	99.5	100.0 / 100.0	Review
`TkA02G104380`	`LXL04_016770`	`JCVI_TKOH_00078`	96.2	56.272 / 91.329	Review
`TkA02G104390`	`LXL04_016769`	`JCVI_TKOH_00078`	99.6	87.313 / 87.313	Complex
`TkA02G104400`	`LXL04_016768`	`JCVI_TKOH_00078`	98.3	95.96 / 89.962	Strict
`TkA02G104490`	`LXL04_016767`	`JCVI_TKOH_00078`	96.0	100.0 / 100.0	Strict
`TkA02G104630`	`LXL04_016766`	`JCVI_TKOH_00078`	85.3	83.73 / 47.309	Review
`TkA02G104640`	`LXL04_016754`	`JCVI_TKOH_00078`	70.6	90.909 / 77.492	Complex
`TkA02G104690`	`LXL04_016759`	`JCVI_TKOH_00078`	63.1	99.042 / 97.535	Complex
`TkA02G104930`	`LXL04_016759`	`JCVI_TKOH_00078`	99.1	100.0 / 100.0	Complex
`TkA02G104940`	`LXL04_016759`	`JCVI_TKOH_00078`	80.6	99.762 / 50.235	Complex
`TkA02G105180`	`LXL04_016758`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G105190`	`LXL04_016759`	`JCVI_TKOH_00078`	80.7	99.338 / 70.54	Complex
`TkA02G105710`	`LXL04_016754`	`JCVI_TKOH_00078`	98.5	82.036 / 15.342	Complex
`TkA02G105730`	`LXL04_016759`	`JCVI_TKOH_00078`	76.5	97.34 / 73.944	Complex
`TkA02G105900`	`LXL04_016747`	`JCVI_TKOH_00078`	92.7	76.332 / 75.179	Complex
`TkA02G105950`	`LXL04_016746`	`JCVI_TKOH_00078`	98.9	99.62 / 96.324	Complex
`TkA02G105960`	`LXL04_016745`	`JCVI_TKOH_00078`	96.4	94.769 / 100.0	Complex
`TkA02G106050`	`LXL04_016742`	`JCVI_TKOH_00078`	73.8	90.533 / 62.805	Complex
`TkA02G106070`	`LXL04_016741`	`JCVI_TKOH_00078`	99.6	100.0 / 100.0	Complex
`TkA02G106080`	`LXL04_016740`	`JCVI_TKOH_00078`	99.8	100.0 / 100.0	Complex
`TkA02G106180`	`LXL04_016738`	`JCVI_TKOH_00078`	90.7	100.0 / 100.0	Probable
`TkA02G106680`	`LXL04_016740`	`JCVI_TKOH_00078`	100.0	99.162 / 57.166	Review
`TkA02G106690`	`LXL04_016741`	`JCVI_TKOH_00078`	99.2	100.0 / 100.0	Complex
`TkA02G106720`	`LXL04_016742`	`JCVI_TKOH_00078`	73.8	90.533 / 62.805	Complex
`TkA02G106780`	`LXL04_016745`	`JCVI_TKOH_00078`	96.5	100.0 / 99.751	Complex
`TkA02G106790`	`LXL04_016746`	`JCVI_TKOH_00078`	98.9	99.62 / 96.324	Complex
`TkA02G106800`	`LXL04_016747`	`JCVI_TKOH_00078`	96.3	92.816 / 69.727	Complex
`TkA02G106900`	`LXL04_016759`	`JCVI_TKOH_00078`	77.0	99.881 / 99.413	Complex
`TkA02G107480`	`LXL04_016737`	`JCVI_TKOH_00078`	99.0	91.202 / 82.933	Strict
`TkA02G107840`	`LXL04_016734`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G107860`	`LXL04_016719`	`JCVI_TKOH_00078`	97.5	90.423 / 100.0	Complex
`TkA02G108460`	`LXL04_016730`	`JCVI_TKOH_00078`	87.5	97.391 / 55.172	Complex
`TkA02G108620`	`LXL04_016726`	`JCVI_TKOH_00078`	80.6	94.94 / 62.896	Complex
`TkA02G108730`	`LXL04_016722`	`JCVI_TKOH_00078`	50.1	92.857 / 83.418	Complex
`TkA02G108810`	`LXL04_016719`	`JCVI_TKOH_00078`	98.1	90.678 / 100.0	Complex
`TkA02G109180`	`LXL04_016713`	`JCVI_TKOH_00078`	96.8	84.436 / 100.0	Strict
`TkA02G109190`	`LXL04_016712`	`JCVI_TKOH_00078`	97.9	100.0 / 100.0	Review
`TkA02G109420`	`LXL04_016709`	`JCVI_TKOH_00078`	98.3	99.718 / 98.061	Strict
`TkA02G109840`	`LXL04_016708`	`JCVI_TKOH_00078`	93.3	70.968 / 53.614	Review
`TkA02G110840`	`LXL04_016695`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G111470`	`LXL04_016691`	`JCVI_TKOH_00078`	99.8	100.0 / 100.0	Strict
`TkA02G111600`	`LXL04_016689`	`JCVI_TKOH_00078`	96.5	99.144 / 81.081	Strict
`TkA02G111630`	`LXL04_016685`	`JCVI_TKOH_00078`	98.8	97.824 / 100.0	Strict
`TkA02G112050`	`LXL04_016681`	`JCVI_TKOH_00078`	97.2	74.74 / 100.0	Probable
`TkA02G112160`	`LXL04_016680`	`JCVI_TKOH_00078`	95.0	100.0 / 100.0	Complex
`TkA02G112170`	`LXL04_016679`	`JCVI_TKOH_00078`	99.5	95.012 / 100.0	Strict
`TkA02G113000`	`LXL04_016670`	`JCVI_TKOH_00078`	99.9	100.0 / 33.534	Review
`TkA02G113200`	`LXL04_016668`	`JCVI_TKOH_00078`	98.7	86.667 / 11.08	Review
`TkA02G113360`	`LXL04_016668`	`JCVI_TKOH_00078`	98.4	50.82 / 4.403	Complex
`TkA02G113410`	`LXL04_016667`	`JCVI_TKOH_00078`	98.1	92.982 / 64.417	Complex
`TkA02G113420`	`LXL04_016666`	`JCVI_TKOH_00078`	99.4	85.014 / 82.105	Review
`TkA02G113440`	`LXL04_016663`	`JCVI_TKOH_00078`	83.8	100.0 / 52.557	Complex
`TkA02G114350`	`LXL04_016657`	`JCVI_TKOH_00078`	83.4	100.0 / 100.0	Complex
`TkA02G114420`	`LXL04_016655`	`JCVI_TKOH_00078`	100.0	42.446 / 24.895	Complex
`TkA02G114440`	`LXL04_016654`	`JCVI_TKOH_00078`	95.9	64.765 / 67.958	Review
`TkA02G114460`	`LXL04_016653`	`JCVI_TKOH_00078`	97.7	100.0 / 91.534	Strict
`TkA02G114640`	`LXL04_016651`	`JCVI_TKOH_00078`	99.3	98.577 / 58.316	Review
`TkA02G114650`	`LXL04_016650`	`JCVI_TKOH_00078`	99.6	100.0 / 100.0	Complex
`TkA02G114920`	`LXL04_016647`	`JCVI_TKOH_00078`	99.7	100.0 / 100.0	Strict
`TkA02G114960`	`LXL04_016646`	`JCVI_TKOH_00078`	96.2	87.687 / 33.239	Review
`TkA02G115760`	`LXL04_016632`	`JCVI_TKOH_00078`	100.0	33.645 / 33.962	Complex
`TkA02G115790`	`LXL04_016630`	`JCVI_TKOH_00078`	99.2	100.0 / 100.0	Strict
`TkA02G116570`	`LXL04_016624`	`JCVI_TKOH_00078`	69.1	100.0 / 100.0	Complex
`TkA02G116720`	`LXL04_016623`	`JCVI_TKOH_00078`	91.0	97.357 / 37.119	Complex
`TkA02G116900`	`LXL04_016624`	`JCVI_TKOH_00078`	98.2	100.0 / 100.0	Complex
`TkA02G116910`	`LXL04_016623`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Strict
`TkA02G116930`	`LXL04_016622`	`JCVI_TKOH_00078`	99.6	100.0 / 100.0	Strict
`TkA02G116950`	`LXL04_016621`	`JCVI_TKOH_00078`	99.3	96.809 / 45.199	Review
`TkA02G116960`	`LXL04_016621`	`JCVI_TKOH_00078`	99.5	100.0 / 36.093	Review
`TkA02G117290`	`LXL04_016619`	`JCVI_TKOH_00078`	96.8	76.113 / 59.683	Review
`TkA02G118450`	`LXL04_016616`	`JCVI_TKOH_00078`	80.8	65.083 / 98.597	Complex
`TkA02G118910`	`LXL04_016614`	`JCVI_TKOH_00078`	100.0	100.0 / 100.0	Complex
`TkA02G118950`	`LXL04_016613`	`JCVI_TKOH_00078`	99.7	100.0 / 95.53	Strict