Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00275

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 55

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00275

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00275 Chr06 47550419-50668096 Chr05 75973327-79379006 mixed High 55 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00275`	Chr06:47550419-50668096	Chr05:75973327-79379006	mixed	55	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 55 · Showing 1–55 · Page 1/1

Download All Anchors TSV

TkA06G181930 → LXL04_024062

99.7%

TkA06G182370 → LXL04_024061

69.2%

TkA06G182460 → LXL04_024060

99.7%

TkA06G182860 → LXL04_024057

100.0%

TkA06G183120 → LXL04_024056

99.4%

TkA06G183420 → LXL04_024055

99.2%

TkA06G183920 → LXL04_024052

98.9%

TkA06G184360 → LXL04_024051

99.1%

TkA06G184410 → LXL04_024049

97.1%

TkA06G184530 → LXL04_024047

94.2%

TkA06G184910 → LXL04_024047

96.2%

TkA06G185050 → LXL04_024045

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G181930`	`LXL04_024062`	`JCVI_TKOH_00275`	99.7	81.742 / 39.06	Review
`TkA06G182370`	`LXL04_024061`	`JCVI_TKOH_00275`	69.2	100.0 / 100.0	Complex
`TkA06G182460`	`LXL04_024060`	`JCVI_TKOH_00275`	99.7	90.212 / 67.126	Complex
`TkA06G182860`	`LXL04_024057`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Complex
`TkA06G183120`	`LXL04_024056`	`JCVI_TKOH_00275`	99.4	100.0 / 100.0	Strict
`TkA06G183420`	`LXL04_024055`	`JCVI_TKOH_00275`	99.2	100.0 / 100.0	Strict
`TkA06G183920`	`LXL04_024052`	`JCVI_TKOH_00275`	98.9	100.0 / 100.0	Strict
`TkA06G184360`	`LXL04_024051`	`JCVI_TKOH_00275`	99.1	100.0 / 80.529	Complex
`TkA06G184410`	`LXL04_024049`	`JCVI_TKOH_00275`	97.1	100.0 / 100.0	Complex
`TkA06G184530`	`LXL04_024047`	`JCVI_TKOH_00275`	94.2	48.148 / 58.427	Complex
`TkA06G184910`	`LXL04_024047`	`JCVI_TKOH_00275`	96.2	48.148 / 58.427	Review
`TkA06G185050`	`LXL04_024045`	`JCVI_TKOH_00275`	100.0	88.339 / 67.204	Complex
`TkA06G185160`	`LXL04_024044`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Strict
`TkA06G185190`	`LXL04_024043`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Review
`TkA06G185380`	`LXL04_024042`	`JCVI_TKOH_00275`	98.5	94.42 / 89.355	Strict
`TkA06G185390`	`LXL04_024041`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Complex
`TkA06G185510`	`LXL04_024041`	`JCVI_TKOH_00275`	88.3	84.615 / 99.248	Complex
`TkA06G185530`	`LXL04_024040`	`JCVI_TKOH_00275`	98.1	100.0 / 85.359	Strict
`TkA06G185540`	`LXL04_024039`	`JCVI_TKOH_00275`	99.8	100.0 / 84.391	Strict
`TkA06G185800`	`LXL04_024037`	`JCVI_TKOH_00275`	99.8	99.101 / 92.295	Strict
`TkA06G185900`	`LXL04_024033`	`JCVI_TKOH_00275`	99.5	100.0 / 100.0	Strict
`TkA06G185940`	`LXL04_024032`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Strict
`TkA06G185990`	`LXL04_024031`	`JCVI_TKOH_00275`	100.0	63.025 / 8.352	Review
`TkA06G186090`	`LXL04_024028`	`JCVI_TKOH_00275`	97.8	75.714 / 86.279	Probable
`TkA06G186100`	`LXL04_024027`	`JCVI_TKOH_00275`	90.0	84.01 / 100.0	Probable
`TkA06G186110`	`LXL04_024026`	`JCVI_TKOH_00275`	98.1	100.0 / 100.0	Strict
`TkA06G186120`	`LXL04_024025`	`JCVI_TKOH_00275`	99.2	100.0 / 100.0	Strict
`TkA06G186190`	`LXL04_024024`	`JCVI_TKOH_00275`	98.0	100.0 / 100.0	Strict
`TkA06G186300`	`LXL04_024022`	`JCVI_TKOH_00275`	99.6	93.151 / 83.692	Complex
`TkA06G186640`	`LXL04_024020`	`JCVI_TKOH_00275`	93.7	100.0 / 100.0	Probable
`TkA06G187920`	`LXL04_024014`	`JCVI_TKOH_00275`	100.0	95.37 / 56.284	Review
`TkA06G188040`	`LXL04_024012`	`JCVI_TKOH_00275`	97.8	90.291 / 54.706	Review
`TkA06G188050`	`LXL04_024011`	`JCVI_TKOH_00275`	99.4	100.0 / 100.0	Complex
`TkA06G188120`	`LXL04_024010`	`JCVI_TKOH_00275`	50.4	96.234 / 66.495	Complex
`TkA06G188210`	`LXL04_024010`	`JCVI_TKOH_00275`	78.6	86.755 / 33.763	Complex
`TkA06G188240`	`LXL04_024010`	`JCVI_TKOH_00275`	81.4	100.0 / 100.0	Complex
`TkA06G188360`	`LXL04_024010`	`JCVI_TKOH_00275`	64.4	98.066 / 99.227	Complex
`TkA06G188630`	`LXL04_024007`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Strict
`TkA06G188640`	`LXL04_024006`	`JCVI_TKOH_00275`	98.7	100.0 / 37.799	Review
`TkA06G188750`	`LXL04_024005`	`JCVI_TKOH_00275`	99.4	100.0 / 100.0	Strict
`TkA06G189380`	`LXL04_024001`	`JCVI_TKOH_00275`	84.1	100.0 / 100.0	Review
`TkA06G190180`	`LXL04_023999`	`JCVI_TKOH_00275`	95.8	100.0 / 100.0	Strict
`TkA06G190330`	`LXL04_023995`	`JCVI_TKOH_00275`	98.1	100.0 / 100.0	Strict
`TkA06G190520`	`LXL04_023992`	`JCVI_TKOH_00275`	97.9	100.0 / 100.0	Complex
`TkA06G190540`	`LXL04_023991`	`JCVI_TKOH_00275`	99.5	98.013 / 78.169	Probable
`TkA06G190550`	`LXL04_023991`	`JCVI_TKOH_00275`	100.0	100.0 / 19.014	Review
`TkA06G190560`	`LXL04_023990`	`JCVI_TKOH_00275`	100.0	100.0 / 80.546	Strict
`TkA06G190700`	`LXL04_023987`	`JCVI_TKOH_00275`	99.8	100.0 / 66.517	Complex
`TkA06G190710`	`LXL04_023986`	`JCVI_TKOH_00275`	98.9	100.0 / 77.522	Complex
`TkA06G190730`	`LXL04_023985`	`JCVI_TKOH_00275`	95.0	100.0 / 100.0	Strict
`TkA06G190750`	`LXL04_023982`	`JCVI_TKOH_00275`	56.4	100.0 / 95.539	Complex
`TkA06G191100`	`LXL04_023982`	`JCVI_TKOH_00275`	79.1	100.0 / 56.877	Complex
`TkA06G191120`	`LXL04_023979`	`JCVI_TKOH_00275`	97.5	100.0 / 100.0	Review
`TkA06G191660`	`LXL04_023977`	`JCVI_TKOH_00275`	100.0	100.0 / 100.0	Strict
`TkA06G193330`	`LXL04_023974`	`JCVI_TKOH_00275`	98.6	100.0 / 100.0	Strict