LXL04_024010 | RubberDandelionOmics

Gene overview

LXL04_024010

Reference: OH-1004 Chr: Chr05 Coordinates: 77642750-77652055 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1167 bp · LXL04_024010|LXL04_024010|OH1004|cDNA

ATGACATCGGAAAGAAGGGAGATGTGGTCATGGACCGAAGAGGTGCTGCCCATTTGTGCTATGTTGATGCTAACATGCTTGGATATCGGATTGCTGACAATAGTGAAAGTCGCCATGAATGATGGTATGAACAGTTTCGTCTATATTGTTTACCATAATGTCCTTGGAACGTTGATTCTTCTTCCATTTTTCTTCATCCATATCTTCAGAATGGTTGGGCGGCCCCCACTCACATTCCACATTCTTTTTAGATTCTTCAT...

CDS

Download CDS FASTA

1167 bp · LXL04_024010|LXL04_024010|OH1004|CDS

ATGACATCGGAAAGAAGGGAGATGTGGTCATGGACCGAAGAGGTGCTGCCCATTTGTGCTATGTTGATGCTAACATGCTTGGATATCGGATTGCTGACAATAGTGAAAGTCGCCATGAATGATGGTATGAACAGTTTCGTCTATATTGTTTACCATAATGTCCTTGGAACGTTGATTCTTCTTCCATTTTTCTTCATCCATATCTTCAGAATGGTTGGGCGGCCCCCACTCACATTCCACATTCTTTTTAGATTCTTCAT...

Protein

Download Protein FASTA

388 aa · LXL04_024010|LXL04_024010|OH1004|PROTEIN

MTSERREMWSWTEEVLPICAMLMLTCLDIGLLTIVKVAMNDGMNSFVYIVYHNVLGTLILLPFFFIHIFRMVGRPPLTFHILFRFFILGLLGVCLFPILLYIGVGYSSPTLASAIGNLTPVNTFLIAVAFRMEKIDIRSSNNRAKLFGTIIAISGAMVFTFYKGPEMLQTISFDSHNGLRLSQGSDWIFGGLILVINGVVGSIWNVLQVLITRFIFCTSDSHMSRVPRSSHYCLFLLPLWDNSVHIIMFVPGKKIQVVGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024010`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024010

Location Chr05:77642750-77652055 (+)

Description Similar to At3g28050: WAT1-related protein At3g28050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40240`	WAT1-related protein At5g40240.	No verified direct reference in this release
`At5g40230`	WAT1-related protein At5g40230.	No verified direct reference in this release
`At5g40210`	WAT1-related protein At5g40210.	No verified direct reference in this release
`At3g28100`	WAT1-related protein At3g28100.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024010 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G28050

ath:AT3G28100

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.332

Rank 1 · LXL04_024010 · OH-1004

Cell membrane0.286

Rank 2 · LXL04_024010 · OH-1004

Endoplasmic reticulum0.246

Rank 3 · LXL04_024010 · OH-1004

Golgi apparatus0.100

Rank 4 · LXL04_024010 · OH-1004

Cytoplasm0.080

Rank 5 · LXL04_024010 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892.27EamA20-159 aa

PF00892.27EamA296-355 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024010	`PF00892.27`	EamA	20	159	1.6e-14	55.1
LXL04_024010	`PF00892.27`	EamA	296	355	1.6e-14	55.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94JU2`	Arabidopsis thaliana	WAT1-related protein At3g28050	37.173%	Swiss-Prot	moderate database homology
`Q9FL08`	Arabidopsis thaliana	WAT1-related protein At5g40240	36.250%	Swiss-Prot	moderate database homology
`F4KHA8`	Arabidopsis thaliana	WAT1-related protein At5g40230	36.410%	Swiss-Prot	moderate database homology
`Q945L4`	Arabidopsis thaliana	WAT1-related protein At5g40210	35.770%	Swiss-Prot	moderate database homology
`Q9LRS5`	Arabidopsis thaliana	WAT1-related protein At3g28100	35.677%	Swiss-Prot	moderate database homology

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