LXL04_024006 | RubberDandelionOmics

Gene overview

LXL04_024006

Reference: OH-1004 Chr: Chr05 Coordinates: 77587827-77590606 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1884 bp · LXL04_024006|LXL04_024006|OH1004|cDNA

ATGATTAACGGAATGGAATCGGTTGAACCCGATGCTATCGATGCGTTAGTTGTTTTTTTCGAAAATCTGTCTAATAATTCttcgattccggttccggtTTCCGGTTGGAATCACAGTTCTGATCCTTGTGAAGCTAAATGGACTGGAATCGTTTGCCATGATGAAAATCTATCTGTTAAGTCAATCACATTCGATAGTTTCAATCTCTCTGGAACTTTCAATCCCAGTTTTATCTGCAATATTGCGTCTCTTGCGACTTC...

CDS

Download CDS FASTA

1884 bp · LXL04_024006|LXL04_024006|OH1004|CDS

ATGATTAACGGAATGGAATCGGTTGAACCCGATGCTATCGATGCGTTAGTTGTTTTTTTCGAAAATCTGTCTAATAATTCTTCGATTCCGGTTCCGGTTTCCGGTTGGAATCACAGTTCTGATCCTTGTGAAGCTAAATGGACTGGAATCGTTTGCCATGATGAAAATCTATCTGTTAAGTCAATCACATTCGATAGTTTCAATCTCTCTGGAACTTTCAATCCCAGTTTTATCTGCAATATTGCGTCTCTTGCGACTTC...

Protein

Download Protein FASTA

627 aa · LXL04_024006|LXL04_024006|OH1004|PROTEIN

MINGMESVEPDAIDALVVFFENLSNNSSIPVPVSGWNHSSDPCEAKWTGIVCHDENLSVKSITFDSFNLSGTFNPSFICNIASLATSIVVISIKNNNLHADNLELIANCNQLTHLYVSGNRFVGNLPEAFSRLNNLKRLEISDNGFSGDLPNLPRISGLIEFLAQNNRLSGSIPEFDFSNLANFNVSNNNFSGKVPPGGDRFTPASYTGNVGLCGEPLPNKCGVPGDEHPLAAQTSDDSKKKGSNWTEILMYSGYALIGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024006`
TK1151 ID	TkA06G188640
OH-1004 ID	LXL04_024006
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 37.799 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024006

Location Chr05:77587827-77590606 (-)

Description Similar to At2g26730: Probable inactive receptor kinase At2g26730

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26730`	Probable inactive receptor kinase At2g26730.	No verified direct reference in this release
`At1g68400`	Probable leucine-rich repeat receptor-like protein kinase At1g68400.	No verified direct reference in this release
`At1g48480`	Probable inactive receptor kinase At1g48480.	No verified direct reference in this release
`At5g58300`	Probable inactive receptor kinase At5g58300.	No verified direct reference in this release
`At1g60630`	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024006 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042742 defense response to bacterium Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009898 cytoplasmic side of plasma membrane Cellular Component

GO:0016328 lateral plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G48480

ath:AT1G60630

ath:AT1G68400

ath:AT2G26730

ath:AT5G58300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.867

Rank 1 · LXL04_024006 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_024006 · OH-1004

Cytoplasm0.075

Rank 3 · LXL04_024006 · OH-1004

Nucleus0.057

Rank 4 · LXL04_024006 · OH-1004

Lysosome / Vacuole0.022

Rank 5 · LXL04_024006 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_213-52 aa

PF00069.32Pkinase350-602 aa

PF07714.24PK_Tyr_Ser-Thr350-603 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024006	`PF08263.18`	LRRNT_2	13	52	5.4e-06	27.3
LXL04_024006	`PF00069.32`	Pkinase	350	602	9.1e-23	81.7
LXL04_024006	`PF07714.24`	PK_Tyr_Ser-Thr	350	603	3.5e-22	79.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48788`	Arabidopsis thaliana	Probable inactive receptor kinase At2g26730	35.000%	Swiss-Prot	moderate database homology
`Q9M9C5`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like protein kinase At1g68400	34.466%	Swiss-Prot	moderate database homology
`Q9LP77`	Arabidopsis thaliana	Probable inactive receptor kinase At1g48480	31.280%	Swiss-Prot	moderate database homology
`Q9LVM0`	Arabidopsis thaliana	Probable inactive receptor kinase At5g58300	32.007%	Swiss-Prot	moderate database homology
`Q84MA9`	Arabidopsis thaliana	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630	34.499%	Swiss-Prot	moderate database homology

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