Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00144

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 64

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00144

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00144 Chr03 94466883-96853545 Chr02 94694419-96866436 mixed High 64 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00144`	Chr03:94466883-96853545	Chr02:94694419-96866436	mixed	64	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 64 · Showing 1–64 · Page 1/1

Download All Anchors TSV

TkA03G382660 → LXL04_008332

99.5%

TkA03G382710 → LXL04_008327

97.5%

TkA03G382800 → LXL04_008326

95.9%

TkA03G382830 → LXL04_008325

99.7%

TkA03G382870 → LXL04_008324

100.0%

TkA03G383070 → LXL04_008322

97.8%

TkA03G383110 → LXL04_008321

98.5%

TkA03G383120 → LXL04_008320

97.9%

TkA03G383130 → LXL04_008319

99.6%

TkA03G383620 → LXL04_008332

99.7%

TkA03G383770 → LXL04_008330

92.9%

TkA03G384130 → LXL04_008318

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G382660`	`LXL04_008332`	`JCVI_TKOH_00144`	99.5	100.0 / 100.0	Complex
`TkA03G382710`	`LXL04_008327`	`JCVI_TKOH_00144`	97.5	100.0 / 100.0	Complex
`TkA03G382800`	`LXL04_008326`	`JCVI_TKOH_00144`	95.9	100.0 / 100.0	Complex
`TkA03G382830`	`LXL04_008325`	`JCVI_TKOH_00144`	99.7	100.0 / 100.0	Complex
`TkA03G382870`	`LXL04_008324`	`JCVI_TKOH_00144`	100.0	100.0 / 96.552	Complex
`TkA03G383070`	`LXL04_008322`	`JCVI_TKOH_00144`	97.8	100.0 / 100.0	Complex
`TkA03G383110`	`LXL04_008321`	`JCVI_TKOH_00144`	98.5	96.296 / 67.01	Complex
`TkA03G383120`	`LXL04_008320`	`JCVI_TKOH_00144`	97.9	100.0 / 100.0	Review
`TkA03G383130`	`LXL04_008319`	`JCVI_TKOH_00144`	99.6	96.8 / 45.489	Review
`TkA03G383620`	`LXL04_008332`	`JCVI_TKOH_00144`	99.7	100.0 / 100.0	Complex
`TkA03G383770`	`LXL04_008330`	`JCVI_TKOH_00144`	92.9	91.593 / 87.137	Complex
`TkA03G384130`	`LXL04_008318`	`JCVI_TKOH_00144`	100.0	62.838 / 36.905	Review
`TkA03G384240`	`LXL04_008317`	`JCVI_TKOH_00144`	91.5	97.475 / 87.917	Complex
`TkA03G384260`	`LXL04_008316`	`JCVI_TKOH_00144`	99.6	99.625 / 100.0	Complex
`TkA03G384370`	`LXL04_008314`	`JCVI_TKOH_00144`	100.0	88.43 / 98.165	Review
`TkA03G384980`	`LXL04_008327`	`JCVI_TKOH_00144`	99.5	94.507 / 98.154	Complex
`TkA03G385270`	`LXL04_008326`	`JCVI_TKOH_00144`	95.7	100.0 / 100.0	Complex
`TkA03G385300`	`LXL04_008325`	`JCVI_TKOH_00144`	99.4	100.0 / 100.0	Complex
`TkA03G385340`	`LXL04_008324`	`JCVI_TKOH_00144`	100.0	100.0 / 100.0	Review
`TkA03G385520`	`LXL04_008322`	`JCVI_TKOH_00144`	96.2	100.0 / 100.0	Complex
`TkA03G385670`	`LXL04_008321`	`JCVI_TKOH_00144`	96.9	96.296 / 67.01	Complex
`TkA03G385690`	`LXL04_008320`	`JCVI_TKOH_00144`	98.6	100.0 / 100.0	Review
`TkA03G385700`	`LXL04_008319`	`JCVI_TKOH_00144`	99.4	99.254 / 100.0	Complex
`TkA03G385860`	`LXL04_008317`	`JCVI_TKOH_00144`	91.0	97.475 / 87.917	Complex
`TkA03G385960`	`LXL04_008316`	`JCVI_TKOH_00144`	99.8	100.0 / 97.17	Complex
`TkA03G385970`	`LXL04_008315`	`JCVI_TKOH_00144`	95.2	100.0 / 97.491	Review
`TkA03G386030`	`LXL04_008314`	`JCVI_TKOH_00144`	100.0	88.43 / 98.165	Review
`TkA03G386300`	`LXL04_008313`	`JCVI_TKOH_00144`	100.0	100.0 / 85.358	Complex
`TkA03G386330`	`LXL04_008313`	`JCVI_TKOH_00144`	76.8	100.0 / 67.601	Complex
`TkA03G386350`	`LXL04_008310`	`JCVI_TKOH_00144`	100.0	100.0 / 80.139	Complex
`TkA03G386370`	`LXL04_008309`	`JCVI_TKOH_00144`	100.0	100.0 / 100.0	Complex
`TkA03G386380`	`LXL04_008308`	`JCVI_TKOH_00144`	98.1	100.0 / 100.0	Complex
`TkA03G386550`	`LXL04_008306`	`JCVI_TKOH_00144`	100.0	96.617 / 69.771	Complex
`TkA03G386760`	`LXL04_008309`	`JCVI_TKOH_00144`	100.0	100.0 / 100.0	Complex
`TkA03G386770`	`LXL04_008308`	`JCVI_TKOH_00144`	99.4	100.0 / 100.0	Complex
`TkA03G386900`	`LXL04_008306`	`JCVI_TKOH_00144`	99.7	100.0 / 100.0	Complex
`TkA03G387360`	`LXL04_008302`	`JCVI_TKOH_00144`	91.0	100.0 / 100.0	Probable
`TkA03G387420`	`LXL04_008301`	`JCVI_TKOH_00144`	97.8	100.0 / 100.0	Strict
`TkA03G387630`	`LXL04_008300`	`JCVI_TKOH_00144`	98.2	100.0 / 100.0	Review
`TkA03G387730`	`LXL04_008299`	`JCVI_TKOH_00144`	100.0	93.455 / 52.772	Review
`TkA03G387760`	`LXL04_008298`	`JCVI_TKOH_00144`	99.5	100.0 / 93.476	Complex
`TkA03G387860`	`LXL04_008294`	`JCVI_TKOH_00144`	98.2	100.0 / 100.0	Review
`TkA03G388080`	`LXL04_008279`	`JCVI_TKOH_00144`	94.3	100.0 / 100.0	Probable
`TkA03G388290`	`LXL04_008278`	`JCVI_TKOH_00144`	99.8	100.0 / 100.0	Strict
`TkA03G388700`	`LXL04_008276`	`JCVI_TKOH_00144`	99.7	100.0 / 100.0	Strict
`TkA03G388710`	`LXL04_008275`	`JCVI_TKOH_00144`	100.0	100.0 / 100.0	Complex
`TkA03G388850`	`LXL04_008274`	`JCVI_TKOH_00144`	99.7	80.332 / 64.695	Review
`TkA03G388980`	`LXL04_008272`	`JCVI_TKOH_00144`	99.7	100.0 / 100.0	Strict
`TkA03G389050`	`LXL04_008270`	`JCVI_TKOH_00144`	98.5	100.0 / 100.0	Review
`TkA03G389540`	`LXL04_008266`	`JCVI_TKOH_00144`	97.9	99.31 / 40.223	Review
`TkA03G389620`	`LXL04_008262`	`JCVI_TKOH_00144`	99.8	100.0 / 100.0	Strict
`TkA03G389940`	`LXL04_008258`	`JCVI_TKOH_00144`	99.7	99.383 / 72.851	Complex
`TkA03G389950`	`LXL04_008257`	`JCVI_TKOH_00144`	100.0	93.593 / 88.528	Complex
`TkA03G389990`	`LXL04_008256`	`JCVI_TKOH_00144`	100.0	100.0 / 99.804	Strict
`TkA03G390020`	`LXL04_008255`	`JCVI_TKOH_00144`	97.7	99.013 / 78.182	Probable
`TkA03G390040`	`LXL04_008254`	`JCVI_TKOH_00144`	98.8	91.005 / 99.422	Complex
`TkA03G390060`	`LXL04_008252`	`JCVI_TKOH_00144`	90.8	100.0 / 100.0	Complex
`TkA03G390100`	`LXL04_008249`	`JCVI_TKOH_00144`	99.8	100.0 / 100.0	Complex
`TkA03G390420`	`LXL04_008248`	`JCVI_TKOH_00144`	94.3	100.0 / 75.231	Probable
`TkA03G390520`	`LXL04_008247`	`JCVI_TKOH_00144`	98.0	99.946 / 69.434	Review
`TkA03G390580`	`LXL04_008246`	`JCVI_TKOH_00144`	98.2	79.943 / 20.805	Review
`TkA03G390590`	`LXL04_008245`	`JCVI_TKOH_00144`	100.0	100.0 / 98.148	Complex
`TkA03G390600`	`LXL04_008244`	`JCVI_TKOH_00144`	75.9	73.184 / 100.0	Review
`TkA03G390690`	`LXL04_008243`	`JCVI_TKOH_00144`	98.6	100.0 / 100.0	Strict