Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00036
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 714
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00036

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00036 Chr01 123381654-146487023 Chr01 15246434-38351657 mixed High 200 anchors
Chr01 123381654-146487023 Chr01 15246434-38351657 JCVI_TKOH_00036 · 714 gene pairs TkA01G544950 | LXL04_001341 | 57.6% | multi_source_to_OH1004 | Complex TkA01G545000 | LXL04_001342 | 78.2% | multi_source_to_OH1004 | Complex TkA01G545270 | LXL04_001341 | 77.4% | multi_source_to_OH1004 | Complex TkA01G545430 | LXL04_001342 | 82.4% | multi_source_to_OH1004 | Complex TkA01G545440 | LXL04_001341 | 78.2% | multi_source_to_OH1004 | Complex TkA01G545950 | LXL04_001341 | 75.6% | multi_source_to_OH1004 | Complex TkA01G545980 | LXL04_001341 | 66.1% | multi_source_to_OH1004 | Complex TkA01G546020 | LXL04_001339 | 98.9% | sequence_supported_annotation_or_model_conflict | Review TkA01G546070 | LXL04_001338 | 99.8% | RBH_high_identity_coverage_synteny | Strict TkA01G546110 | LXL04_001337 | 90.8% | RBH_sequence_supported | Probable TkA01G546230 | LXL04_001334 | 99.7% | multi_source_to_OH1004 | Complex TkA01G547210 | LXL04_001330 | 95.9% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00036 Chr01:123381654-146487023 Chr01:15246434-38351657 mixed 714 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 714 · Showing 401–600 · Page 3/4

TkA01G544950 → LXL04_001341
57.6%
TkA01G545000 → LXL04_001342
78.2%
TkA01G545270 → LXL04_001341
77.4%
TkA01G545430 → LXL04_001342
82.4%
TkA01G545440 → LXL04_001341
78.2%
TkA01G545950 → LXL04_001341
75.6%
TkA01G545980 → LXL04_001341
66.1%
TkA01G546020 → LXL04_001339
98.9%
TkA01G546070 → LXL04_001338
99.8%
TkA01G546110 → LXL04_001337
90.8%
TkA01G546230 → LXL04_001334
99.7%
TkA01G547210 → LXL04_001330
95.9%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G544950LXL04_001341JCVI_TKOH_0003657.697.291 / 55.838Complex
TkA01G545000LXL04_001342JCVI_TKOH_0003678.299.313 / 42.5Complex
TkA01G545270LXL04_001341JCVI_TKOH_0003677.496.53 / 93.413Complex
TkA01G545430LXL04_001342JCVI_TKOH_0003682.492.96 / 79.412Complex
TkA01G545440LXL04_001341JCVI_TKOH_0003678.299.4 / 100.0Complex
TkA01G545950LXL04_001341JCVI_TKOH_0003675.699.679 / 93.413Complex
TkA01G545980LXL04_001341JCVI_TKOH_0003666.186.189 / 96.407Complex
TkA01G546020LXL04_001339JCVI_TKOH_0003698.9100.0 / 100.0Review
TkA01G546070LXL04_001338JCVI_TKOH_0003699.8100.0 / 82.406Strict
TkA01G546110LXL04_001337JCVI_TKOH_0003690.897.191 / 91.935Probable
TkA01G546230LXL04_001334JCVI_TKOH_0003699.797.892 / 76.112Complex
TkA01G547210LXL04_001330JCVI_TKOH_0003695.9100.0 / 97.436Strict
TkA01G547220LXL04_001329JCVI_TKOH_00036100.0100.0 / 41.736Review
TkA01G547240LXL04_001328JCVI_TKOH_00036100.0100.0 / 39.222Review
TkA01G547620LXL04_001325JCVI_TKOH_00036100.0100.0 / 82.587Complex
TkA01G547670LXL04_001324JCVI_TKOH_00036100.078.519 / 100.0Probable
TkA01G547680LXL04_001323JCVI_TKOH_0003698.9100.0 / 100.0Strict
TkA01G547690LXL04_001322JCVI_TKOH_0003699.8100.0 / 99.679Strict
TkA01G547700LXL04_001321JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G547800LXL04_001318JCVI_TKOH_0003697.277.941 / 61.988Review
TkA01G547960LXL04_001293JCVI_TKOH_0003666.792.197 / 98.556Review
TkA01G547980LXL04_001313JCVI_TKOH_0003698.797.232 / 73.773Probable
TkA01G547990LXL04_001312JCVI_TKOH_0003677.588.148 / 11.988Complex
TkA01G548000LXL04_001310JCVI_TKOH_0003681.696.933 / 25.402Complex
TkA01G548010LXL04_001310JCVI_TKOH_0003696.394.611 / 25.723Review
TkA01G548060LXL04_001310JCVI_TKOH_0003673.580.0 / 18.167Complex
TkA01G548510LXL04_001310JCVI_TKOH_0003666.496.667 / 18.65Complex
TkA01G548520LXL04_001310JCVI_TKOH_0003681.092.228 / 28.457Complex
TkA01G548570LXL04_001306JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G548590LXL04_001305JCVI_TKOH_0003689.793.393 / 62.828Review
TkA01G548630LXL04_001303JCVI_TKOH_0003697.894.154 / 100.0Strict
TkA01G548670LXL04_001302JCVI_TKOH_0003699.597.872 / 88.889Strict
TkA01G548710LXL04_001301JCVI_TKOH_0003697.6100.0 / 100.0Strict
TkA01G548750LXL04_001300JCVI_TKOH_0003695.2100.0 / 100.0Complex
TkA01G549020LXL04_001298JCVI_TKOH_0003691.599.487 / 93.229Probable
TkA01G549040LXL04_001291JCVI_TKOH_0003684.999.033 / 99.001Complex
TkA01G549060LXL04_001314JCVI_TKOH_0003679.044.134 / 13.433Complex
TkA01G549110LXL04_001297JCVI_TKOH_0003662.7100.0 / 8.433Complex
TkA01G549330LXL04_001288JCVI_TKOH_0003696.099.599 / 86.784Complex
TkA01G549380LXL04_001268JCVI_TKOH_0003693.949.927 / 86.616Complex
TkA01G549450LXL04_001295JCVI_TKOH_0003699.292.857 / 81.761Strict
TkA01G549510LXL04_001293JCVI_TKOH_00036100.0100.0 / 27.238Review
TkA01G549530LXL04_001288JCVI_TKOH_0003695.697.473 / 62.924Complex
TkA01G549570LXL04_001291JCVI_TKOH_0003693.6100.0 / 99.667Complex
TkA01G549830LXL04_001293JCVI_TKOH_0003694.489.498 / 18.864Complex
TkA01G549900LXL04_001288JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G549910LXL04_001287JCVI_TKOH_0003699.7100.0 / 99.18Review
TkA01G549930LXL04_001286JCVI_TKOH_0003699.9100.0 / 100.0Complex
TkA01G549940LXL04_001285JCVI_TKOH_0003699.3100.0 / 100.0Complex
TkA01G549950LXL04_001284JCVI_TKOH_0003683.8100.0 / 91.91Complex
TkA01G550000LXL04_001281JCVI_TKOH_0003699.599.739 / 79.603Complex
TkA01G550120LXL04_001280JCVI_TKOH_0003690.4100.0 / 100.0Complex
TkA01G550230LXL04_001269JCVI_TKOH_0003691.3100.0 / 100.0Complex
TkA01G550240LXL04_001267JCVI_TKOH_0003699.0100.0 / 75.542Complex
TkA01G550290LXL04_001266JCVI_TKOH_0003687.0100.0 / 100.0Review
TkA01G550320LXL04_001264JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G550370LXL04_001263JCVI_TKOH_00036100.097.84 / 99.062Complex
TkA01G550390LXL04_001258JCVI_TKOH_0003663.398.985 / 40.888Complex
TkA01G550470LXL04_001260JCVI_TKOH_0003696.131.098 / 13.6Review
TkA01G550930LXL04_001258JCVI_TKOH_0003697.399.412 / 51.761Review
TkA01G551110LXL04_001258JCVI_TKOH_0003697.099.412 / 51.761Review
TkA01G551180LXL04_001257JCVI_TKOH_0003699.171.028 / 77.027Probable
TkA01G551200LXL04_001255JCVI_TKOH_00036100.098.404 / 88.517Strict
TkA01G551440LXL04_001249JCVI_TKOH_00036100.090.828 / 64.092Review
TkA01G551450LXL04_001248JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G551520LXL04_001245JCVI_TKOH_0003697.5100.0 / 100.0Strict
TkA01G551530LXL04_001244JCVI_TKOH_0003699.0100.0 / 100.0Strict
TkA01G551650LXL04_001243JCVI_TKOH_0003688.9100.0 / 100.0Review
TkA01G551730LXL04_001242JCVI_TKOH_0003699.1100.0 / 100.0Review
TkA01G551740LXL04_001241JCVI_TKOH_0003681.398.742 / 43.034Review
TkA01G551750LXL04_001240JCVI_TKOH_0003689.3100.0 / 100.0Complex
TkA01G551780LXL04_001239JCVI_TKOH_0003697.681.081 / 84.0Strict
TkA01G552560LXL04_001236JCVI_TKOH_0003699.699.288 / 81.698Strict
TkA01G552580LXL04_001235JCVI_TKOH_0003699.8100.0 / 68.058Complex
TkA01G552590LXL04_001234JCVI_TKOH_0003698.3100.0 / 100.0Complex
TkA01G552670LXL04_001233JCVI_TKOH_0003696.737.423 / 11.731Complex
TkA01G552680LXL04_001233JCVI_TKOH_0003691.681.034 / 27.5Complex
TkA01G552970LXL04_001233JCVI_TKOH_0003699.8100.0 / 100.0Complex
TkA01G553140LXL04_001232JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G553790LXL04_001226JCVI_TKOH_0003698.8100.0 / 100.0Strict
TkA01G553830LXL04_001224JCVI_TKOH_0003699.0100.0 / 82.961Strict
TkA01G553870LXL04_001223JCVI_TKOH_0003698.991.262 / 59.494Review
TkA01G554010LXL04_001221JCVI_TKOH_0003699.5100.0 / 100.0Review
TkA01G554160LXL04_001221JCVI_TKOH_0003697.4100.0 / 69.292Complex
TkA01G554230LXL04_001218JCVI_TKOH_0003699.7100.0 / 100.0Review
TkA01G554330LXL04_001217JCVI_TKOH_0003699.1100.0 / 100.0Strict
TkA01G554510LXL04_001215JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G554580LXL04_001213JCVI_TKOH_0003696.6100.0 / 100.0Review
TkA01G554590LXL04_001212JCVI_TKOH_0003699.597.98 / 43.016Review
TkA01G554660LXL04_001210JCVI_TKOH_0003698.2100.0 / 100.0Complex
TkA01G554670LXL04_001209JCVI_TKOH_0003699.499.722 / 99.171Complex
TkA01G554710LXL04_001210JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G554720LXL04_001209JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G554780LXL04_001206JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G554850LXL04_001206JCVI_TKOH_0003661.199.367 / 42.12Complex
TkA01G555140LXL04_001203JCVI_TKOH_0003699.4100.0 / 100.0Complex
TkA01G555210LXL04_001195JCVI_TKOH_0003671.5100.0 / 100.0Complex
TkA01G555220LXL04_001213JCVI_TKOH_0003695.398.582 / 94.881Review
TkA01G555300LXL04_001206JCVI_TKOH_0003678.0100.0 / 66.576Complex
TkA01G555730LXL04_001197JCVI_TKOH_0003698.6100.0 / 100.0Review
TkA01G555920LXL04_001197JCVI_TKOH_0003698.6100.0 / 100.0Review
TkA01G555990LXL04_001196JCVI_TKOH_0003679.2100.0 / 88.06Review
TkA01G556000LXL04_001195JCVI_TKOH_0003699.596.38 / 57.105Review
TkA01G556010LXL04_001194JCVI_TKOH_0003699.4100.0 / 100.0Strict
TkA01G556040LXL04_001193JCVI_TKOH_0003684.0100.0 / 100.0Complex
TkA01G556050LXL04_001192JCVI_TKOH_0003694.0100.0 / 100.0Probable
TkA01G556100LXL04_001191JCVI_TKOH_0003674.4100.0 / 100.0Review
TkA01G556150LXL04_001190JCVI_TKOH_0003699.099.419 / 98.569Strict
TkA01G556180LXL04_001188JCVI_TKOH_0003695.3100.0 / 100.0Strict
TkA01G556330LXL04_001187JCVI_TKOH_0003699.198.696 / 33.042Review
TkA01G556380LXL04_001183JCVI_TKOH_0003667.6100.0 / 98.077Complex
TkA01G556390LXL04_001183JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G556640LXL04_001178JCVI_TKOH_0003696.4100.0 / 100.0Complex
TkA01G556650LXL04_001177JCVI_TKOH_0003670.172.199 / 78.75Review
TkA01G556670LXL04_001176JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G556710LXL04_001175JCVI_TKOH_0003699.7100.0 / 96.154Complex
TkA01G556740LXL04_001173JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G556750LXL04_001172JCVI_TKOH_0003652.6100.0 / 100.0Review
TkA01G556760LXL04_001171JCVI_TKOH_0003698.8100.0 / 100.0Strict
TkA01G556810LXL04_001169JCVI_TKOH_0003698.6100.0 / 100.0Strict
TkA01G556840LXL04_001168JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G556900LXL04_001167JCVI_TKOH_0003678.3100.0 / 95.833Review
TkA01G556980LXL04_001166JCVI_TKOH_0003688.697.059 / 67.01Review
TkA01G556990LXL04_001165JCVI_TKOH_0003699.1100.0 / 100.0Complex
TkA01G557000LXL04_001164JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G557010LXL04_001163JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G557250LXL04_001161JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G557370LXL04_001161JCVI_TKOH_0003680.791.503 / 43.887Complex
TkA01G557470LXL04_001159JCVI_TKOH_0003699.489.323 / 40.471Review
TkA01G557480LXL04_001158JCVI_TKOH_0003692.466.393 / 37.639Complex
TkA01G557490LXL04_001156JCVI_TKOH_0003688.293.311 / 68.668Review
TkA01G557670LXL04_001154JCVI_TKOH_0003699.2100.0 / 100.0Review
TkA01G557680LXL04_001150JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G557690LXL04_001149JCVI_TKOH_0003699.292.989 / 80.769Review
TkA01G557810LXL04_001147JCVI_TKOH_0003693.894.158 / 63.646Review
TkA01G558040LXL04_001145JCVI_TKOH_0003699.7100.0 / 100.0Strict
TkA01G558050LXL04_001144JCVI_TKOH_0003699.4100.0 / 100.0Complex
TkA01G558070LXL04_001142JCVI_TKOH_0003699.799.934 / 96.541Strict
TkA01G558100LXL04_001140JCVI_TKOH_00036100.0100.0 / 95.968Strict
TkA01G558130LXL04_001138JCVI_TKOH_0003699.4100.0 / 100.0Strict
TkA01G558190LXL04_001136JCVI_TKOH_0003698.194.256 / 78.993Probable
TkA01G558210LXL04_001134JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G558430LXL04_001132JCVI_TKOH_0003695.0100.0 / 36.439Review
TkA01G558460LXL04_001131JCVI_TKOH_0003694.3100.0 / 100.0Probable
TkA01G558600LXL04_001130JCVI_TKOH_0003698.9100.0 / 58.23Review
TkA01G558670LXL04_001129JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G558820LXL04_001128JCVI_TKOH_0003690.034.965 / 12.723Complex
TkA01G559170LXL04_001126JCVI_TKOH_0003699.7100.0 / 100.0Complex
TkA01G559180LXL04_001124JCVI_TKOH_0003699.057.714 / 99.02Review
TkA01G559190LXL04_001123JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G559550LXL04_001123JCVI_TKOH_0003692.2100.0 / 100.0Complex
TkA01G559580LXL04_001118JCVI_TKOH_00036100.0100.0 / 100.0Complex
TkA01G559620LXL04_001117JCVI_TKOH_0003687.284.564 / 20.885Complex
TkA01G559850LXL04_001112JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G559860LXL04_001111JCVI_TKOH_0003699.397.872 / 47.902Review
TkA01G559870LXL04_001110JCVI_TKOH_0003696.9100.0 / 100.0Strict
TkA01G559960LXL04_001109JCVI_TKOH_00036100.0100.0 / 67.952Complex
TkA01G560920LXL04_001099JCVI_TKOH_0003699.7100.0 / 99.725Complex
TkA01G561270LXL04_001095JCVI_TKOH_00036100.0100.0 / 87.5Strict
TkA01G561650LXL04_001092JCVI_TKOH_0003679.593.789 / 27.963Review
TkA01G561690LXL04_001092JCVI_TKOH_0003699.260.5 / 22.407Complex
TkA01G561700LXL04_001091JCVI_TKOH_0003698.9100.0 / 100.0Strict
TkA01G561850LXL04_001090JCVI_TKOH_00036100.082.4 / 53.368Complex
TkA01G562000LXL04_001089JCVI_TKOH_0003689.1100.0 / 78.025Review
TkA01G562040LXL04_001088JCVI_TKOH_0003695.996.026 / 94.463Complex
TkA01G562060LXL04_001087JCVI_TKOH_0003699.596.442 / 58.996Review
TkA01G562380LXL04_001083JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G562430LXL04_001079JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G562530LXL04_001078JCVI_TKOH_0003691.1100.0 / 100.0Probable
TkA01G563090LXL04_001075JCVI_TKOH_0003696.4100.0 / 67.351Complex
TkA01G563340LXL04_001072JCVI_TKOH_0003697.181.395 / 73.684Probable
TkA01G563350LXL04_001071JCVI_TKOH_0003694.7100.0 / 100.0Probable
TkA01G563400LXL04_001070JCVI_TKOH_0003696.876.543 / 11.889Complex
TkA01G563410LXL04_001069JCVI_TKOH_0003698.9100.0 / 100.0Strict
TkA01G563690LXL04_001067JCVI_TKOH_0003699.6100.0 / 96.055Strict
TkA01G564100LXL04_001066JCVI_TKOH_0003694.9100.0 / 100.0Probable
TkA01G564110LXL04_001065JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G564210LXL04_001063JCVI_TKOH_0003696.199.513 / 59.43Review
TkA01G564290LXL04_001058JCVI_TKOH_0003699.8100.0 / 100.0Strict
TkA01G564320LXL04_001056JCVI_TKOH_0003689.7100.0 / 79.181Review
TkA01G564390LXL04_001055JCVI_TKOH_0003695.6100.0 / 100.0Strict
TkA01G564400LXL04_001054JCVI_TKOH_00036100.098.651 / 100.0Strict
TkA01G564450LXL04_001053JCVI_TKOH_0003699.1100.0 / 100.0Complex
TkA01G564460LXL04_001052JCVI_TKOH_0003699.9100.0 / 100.0Strict
TkA01G564480LXL04_001051JCVI_TKOH_0003696.598.684 / 81.627Strict
TkA01G564770LXL04_001048JCVI_TKOH_0003699.3100.0 / 100.0Strict
TkA01G564810LXL04_001045JCVI_TKOH_0003687.3100.0 / 64.727Review
TkA01G564890LXL04_001044JCVI_TKOH_0003698.799.089 / 92.979Strict
TkA01G564930LXL04_001043JCVI_TKOH_00036100.0100.0 / 100.0Review
TkA01G564950LXL04_001042JCVI_TKOH_0003699.3100.0 / 55.218Review
TkA01G565010LXL04_001041JCVI_TKOH_0003681.6100.0 / 100.0Review
TkA01G565160LXL04_001064JCVI_TKOH_0003696.284.127 / 97.248Strict
TkA01G565250LXL04_001037JCVI_TKOH_0003695.7100.0 / 100.0Strict
TkA01G565550LXL04_001034JCVI_TKOH_0003698.589.726 / 47.636Review
TkA01G565560LXL04_001034JCVI_TKOH_0003692.471.978 / 47.636Complex
TkA01G565570LXL04_001033JCVI_TKOH_0003697.589.427 / 91.855Review
TkA01G565630LXL04_001031JCVI_TKOH_0003684.5100.0 / 100.0Review
TkA01G565860LXL04_001030JCVI_TKOH_0003699.6100.0 / 100.0Strict
TkA01G566030LXL04_001027JCVI_TKOH_00036100.0100.0 / 100.0Strict
TkA01G566060LXL04_001026JCVI_TKOH_0003698.9100.0 / 100.0Strict