Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00284

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 82

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00284

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00284 Chr06 94949102-102587011 Chr05 19095025-28363586 mixed High 82 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00284`	Chr06:94949102-102587011	Chr05:19095025-28363586	mixed	82	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 82 · Showing 1–82 · Page 1/1

Download All Anchors TSV

TkA06G383810 → LXL04_023239

81.9%

TkA06G384120 → LXL04_023236

97.1%

TkA06G385020 → LXL04_023232

93.2%

TkA06G385670 → LXL04_023230

100.0%

TkA06G386730 → LXL04_023227

98.6%

TkA06G387660 → LXL04_023226

98.8%

TkA06G388210 → LXL04_023225

99.0%

TkA06G388490 → LXL04_023182

82.0%

TkA06G388850 → LXL04_023225

96.4%

TkA06G389070 → LXL04_023189

98.4%

TkA06G389200 → LXL04_023218

93.4%

TkA06G389210 → LXL04_023186

95.5%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G383810`	`LXL04_023239`	`JCVI_TKOH_00284`	81.9	100.0 / 100.0	Complex
`TkA06G384120`	`LXL04_023236`	`JCVI_TKOH_00284`	97.1	29.167 / 33.333	Review
`TkA06G385020`	`LXL04_023232`	`JCVI_TKOH_00284`	93.2	100.0 / 100.0	Complex
`TkA06G385670`	`LXL04_023230`	`JCVI_TKOH_00284`	100.0	67.647 / 98.571	Review
`TkA06G386730`	`LXL04_023227`	`JCVI_TKOH_00284`	98.6	100.0 / 100.0	Strict
`TkA06G387660`	`LXL04_023226`	`JCVI_TKOH_00284`	98.8	100.0 / 100.0	Strict
`TkA06G388210`	`LXL04_023225`	`JCVI_TKOH_00284`	99.0	100.0 / 83.936	Complex
`TkA06G388490`	`LXL04_023182`	`JCVI_TKOH_00284`	82.0	73.822 / 50.312	Complex
`TkA06G388850`	`LXL04_023225`	`JCVI_TKOH_00284`	96.4	58.451 / 67.47	Complex
`TkA06G389070`	`LXL04_023189`	`JCVI_TKOH_00284`	98.4	100.0 / 92.537	Strict
`TkA06G389200`	`LXL04_023218`	`JCVI_TKOH_00284`	93.4	99.61 / 99.687	Review
`TkA06G389210`	`LXL04_023186`	`JCVI_TKOH_00284`	95.5	98.113 / 99.363	Review
`TkA06G389660`	`LXL04_023214`	`JCVI_TKOH_00284`	95.7	94.0 / 91.558	Strict
`TkA06G390010`	`LXL04_023174`	`JCVI_TKOH_00284`	88.4	99.687 / 99.609	Complex
`TkA06G390040`	`LXL04_023171`	`JCVI_TKOH_00284`	96.0	99.715 / 100.0	Strict
`TkA06G390560`	`LXL04_023169`	`JCVI_TKOH_00284`	90.5	98.998 / 53.804	Review
`TkA06G390860`	`LXL04_023168`	`JCVI_TKOH_00284`	100.0	91.729 / 100.0	Strict
`TkA06G391020`	`LXL04_023165`	`JCVI_TKOH_00284`	98.9	97.479 / 95.789	Strict
`TkA06G391040`	`LXL04_023164`	`JCVI_TKOH_00284`	100.0	100.0 / 100.0	Strict
`TkA06G391350`	`LXL04_023156`	`JCVI_TKOH_00284`	100.0	98.653 / 81.389	Complex
`TkA06G391950`	`LXL04_023154`	`JCVI_TKOH_00284`	98.7	100.0 / 100.0	Review
`TkA06G392090`	`LXL04_023153`	`JCVI_TKOH_00284`	97.3	97.556 / 74.282	Probable
`TkA06G392210`	`LXL04_023152`	`JCVI_TKOH_00284`	96.0	100.0 / 96.684	Strict
`TkA06G392220`	`LXL04_023151`	`JCVI_TKOH_00284`	99.4	92.222 / 100.0	Strict
`TkA06G392740`	`LXL04_023148`	`JCVI_TKOH_00284`	99.7	100.0 / 100.0	Complex
`TkA06G392750`	`LXL04_023147`	`JCVI_TKOH_00284`	100.0	100.0 / 100.0	Strict
`TkA06G392770`	`LXL04_023145`	`JCVI_TKOH_00284`	92.6	95.785 / 89.195	Review
`TkA06G393100`	`LXL04_023144`	`JCVI_TKOH_00284`	87.4	99.375 / 85.637	Review
`TkA06G393360`	`LXL04_023142`	`JCVI_TKOH_00284`	100.0	100.0 / 72.103	Probable
`TkA06G393660`	`LXL04_023141`	`JCVI_TKOH_00284`	99.2	100.0 / 100.0	Strict
`TkA06G394690`	`LXL04_023138`	`JCVI_TKOH_00284`	100.0	100.0 / 100.0	Strict
`TkA06G394880`	`LXL04_023136`	`JCVI_TKOH_00284`	98.6	100.0 / 100.0	Review
`TkA06G395130`	`LXL04_023135`	`JCVI_TKOH_00284`	98.4	100.0 / 100.0	Complex
`TkA06G395140`	`LXL04_023133`	`JCVI_TKOH_00284`	90.8	100.0 / 100.0	Complex
`TkA06G395300`	`LXL04_023135`	`JCVI_TKOH_00284`	97.0	92.009 / 53.457	Review
`TkA06G395310`	`LXL04_023133`	`JCVI_TKOH_00284`	77.0	78.09 / 28.516	Complex
`TkA06G395550`	`LXL04_023131`	`JCVI_TKOH_00284`	97.4	69.863 / 27.971	Complex
`TkA06G395670`	`LXL04_023130`	`JCVI_TKOH_00284`	95.5	99.624 / 99.624	Strict
`TkA06G395830`	`LXL04_023129`	`JCVI_TKOH_00284`	98.4	75.494 / 77.959	Probable
`TkA06G395840`	`LXL04_023128`	`JCVI_TKOH_00284`	99.7	99.453 / 90.412	Complex
`TkA06G395960`	`LXL04_023126`	`JCVI_TKOH_00284`	96.2	100.0 / 100.0	Strict
`TkA06G396800`	`LXL04_023124`	`JCVI_TKOH_00284`	97.5	99.252 / 99.5	Strict
`TkA06G396810`	`LXL04_023123`	`JCVI_TKOH_00284`	98.2	100.0 / 100.0	Strict
`TkA06G398860`	`LXL04_023120`	`JCVI_TKOH_00284`	99.6	100.0 / 100.0	Strict
`TkA06G398870`	`LXL04_023119`	`JCVI_TKOH_00284`	91.9	100.0 / 100.0	Probable
`TkA06G398890`	`LXL04_023116`	`JCVI_TKOH_00284`	97.6	100.0 / 51.077	Review
`TkA06G400570`	`LXL04_023078`	`JCVI_TKOH_00284`	62.2	97.995 / 34.612	Complex
`TkA06G401610`	`LXL04_023111`	`JCVI_TKOH_00284`	100.0	15.132 / 11.616	Complex
`TkA06G401790`	`LXL04_023110`	`JCVI_TKOH_00284`	90.0	94.336 / 88.244	Probable
`TkA06G401800`	`LXL04_023107`	`JCVI_TKOH_00284`	84.2	99.02 / 89.583	Review
`TkA06G401810`	`LXL04_023105`	`JCVI_TKOH_00284`	99.8	100.0 / 100.0	Complex
`TkA06G401880`	`LXL04_023104`	`JCVI_TKOH_00284`	99.2	99.354 / 63.731	Review
`TkA06G402800`	`LXL04_023098`	`JCVI_TKOH_00284`	90.6	100.0 / 100.0	Probable
`TkA06G402940`	`LXL04_023097`	`JCVI_TKOH_00284`	100.0	100.0 / 100.0	Strict
`TkA06G403270`	`LXL04_023095`	`JCVI_TKOH_00284`	98.0	100.0 / 100.0	Strict
`TkA06G403590`	`LXL04_023091`	`JCVI_TKOH_00284`	99.7	100.0 / 100.0	Complex
`TkA06G403840`	`LXL04_023090`	`JCVI_TKOH_00284`	97.2	88.344 / 100.0	Review
`TkA06G404000`	`LXL04_023088`	`JCVI_TKOH_00284`	82.2	100.0 / 77.939	Complex
`TkA06G404360`	`LXL04_023084`	`JCVI_TKOH_00284`	100.0	75.172 / 57.672	Complex
`TkA06G404420`	`LXL04_023082`	`JCVI_TKOH_00284`	100.0	97.976 / 18.127	Review
`TkA06G404440`	`LXL04_023081`	`JCVI_TKOH_00284`	99.7	87.367 / 53.328	Review
`TkA06G404620`	`LXL04_023080`	`JCVI_TKOH_00284`	93.3	100.0 / 100.0	Probable
`TkA06G404690`	`LXL04_023078`	`JCVI_TKOH_00284`	63.0	98.545 / 62.803	Complex
`TkA06G405100`	`LXL04_023077`	`JCVI_TKOH_00284`	99.1	100.0 / 100.0	Strict
`TkA06G405540`	`LXL04_023075`	`JCVI_TKOH_00284`	96.9	100.0 / 46.265	Review
`TkA06G405640`	`LXL04_023075`	`JCVI_TKOH_00284`	98.7	100.0 / 53.735	Review
`TkA06G406190`	`LXL04_023072`	`JCVI_TKOH_00284`	97.5	99.648 / 81.556	Strict
`TkA06G406350`	`LXL04_023075`	`JCVI_TKOH_00284`	86.1	99.532 / 99.518	Complex
`TkA06G406850`	`LXL04_023061`	`JCVI_TKOH_00284`	89.3	92.188 / 60.41	Complex
`TkA06G407300`	`LXL04_023059`	`JCVI_TKOH_00284`	100.0	100.0 / 86.557	Strict
`TkA06G407870`	`LXL04_023056`	`JCVI_TKOH_00284`	99.3	91.195 / 100.0	Complex
`TkA06G409120`	`LXL04_023055`	`JCVI_TKOH_00284`	98.0	100.0 / 100.0	Strict
`TkA06G409510`	`LXL04_023046`	`JCVI_TKOH_00284`	98.5	100.0 / 96.243	Complex
`TkA06G410640`	`LXL04_023043`	`JCVI_TKOH_00284`	99.6	94.513 / 100.0	Review
`TkA06G411340`	`LXL04_023042`	`JCVI_TKOH_00284`	99.0	100.0 / 94.569	Complex
`TkA06G411740`	`LXL04_023037`	`JCVI_TKOH_00284`	78.0	96.714 / 81.877	Review
`TkA06G411930`	`LXL04_023036`	`JCVI_TKOH_00284`	100.0	99.744 / 80.206	Strict
`TkA06G413320`	`LXL04_023029`	`JCVI_TKOH_00284`	97.7	85.437 / 98.876	Complex
`TkA06G413920`	`LXL04_023023`	`JCVI_TKOH_00284`	98.2	97.482 / 99.267	Strict
`TkA06G413950`	`LXL04_023022`	`JCVI_TKOH_00284`	82.4	100.0 / 100.0	Complex
`TkA06G414290`	`LXL04_023021`	`JCVI_TKOH_00284`	79.7	100.0 / 100.0	Complex
`TkA06G414560`	`LXL04_023020`	`JCVI_TKOH_00284`	98.1	97.942 / 100.0	Strict