Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00273

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 82

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00273

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00273 Chr06 40446935-45525359 Chr05 82127828-87294665 mixed High 82 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00273`	Chr06:40446935-45525359	Chr05:82127828-87294665	mixed	82	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 82 · Showing 1–82 · Page 1/1

Download All Anchors TSV

TkA06G155190 → LXL04_024318

100.0%

TkA06G155220 → LXL04_024317

98.9%

TkA06G155750 → LXL04_024299

100.0%

TkA06G155850 → LXL04_024297

99.8%

TkA06G155940 → LXL04_024294

98.7%

TkA06G155950 → LXL04_024293

96.5%

TkA06G156010 → LXL04_024294

88.6%

TkA06G156110 → LXL04_024290

71.1%

TkA06G156260 → LXL04_024290

98.8%

TkA06G156500 → LXL04_024288

92.8%

TkA06G156580 → LXL04_024288

80.3%

TkA06G156720 → LXL04_024288

97.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G155190`	`LXL04_024318`	`JCVI_TKOH_00273`	100.0	95.946 / 68.269	Complex
`TkA06G155220`	`LXL04_024317`	`JCVI_TKOH_00273`	98.9	86.275 / 53.012	Review
`TkA06G155750`	`LXL04_024299`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G155850`	`LXL04_024297`	`JCVI_TKOH_00273`	99.8	100.0 / 100.0	Strict
`TkA06G155940`	`LXL04_024294`	`JCVI_TKOH_00273`	98.7	90.669 / 68.14	Complex
`TkA06G155950`	`LXL04_024293`	`JCVI_TKOH_00273`	96.5	94.475 / 81.043	Strict
`TkA06G156010`	`LXL04_024294`	`JCVI_TKOH_00273`	88.6	90.467 / 67.988	Complex
`TkA06G156110`	`LXL04_024290`	`JCVI_TKOH_00273`	71.1	96.032 / 23.379	Complex
`TkA06G156260`	`LXL04_024290`	`JCVI_TKOH_00273`	98.8	100.0 / 97.053	Complex
`TkA06G156500`	`LXL04_024288`	`JCVI_TKOH_00273`	92.8	72.674 / 8.897	Complex
`TkA06G156580`	`LXL04_024288`	`JCVI_TKOH_00273`	80.3	84.076 / 9.324	Complex
`TkA06G156720`	`LXL04_024288`	`JCVI_TKOH_00273`	97.0	94.836 / 14.306	Review
`TkA06G156730`	`LXL04_024287`	`JCVI_TKOH_00273`	87.5	100.0 / 100.0	Review
`TkA06G157260`	`LXL04_024283`	`JCVI_TKOH_00273`	93.7	100.0 / 89.783	Probable
`TkA06G157290`	`LXL04_024282`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G157310`	`LXL04_024281`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G157420`	`LXL04_024275`	`JCVI_TKOH_00273`	99.6	82.686 / 82.394	Strict
`TkA06G157480`	`LXL04_024273`	`JCVI_TKOH_00273`	88.0	99.722 / 98.28	Review
`TkA06G157500`	`LXL04_024272`	`JCVI_TKOH_00273`	97.5	99.721 / 12.049	Review
`TkA06G157570`	`LXL04_024270`	`JCVI_TKOH_00273`	91.7	88.889 / 30.508	Complex
`TkA06G157580`	`LXL04_024269`	`JCVI_TKOH_00273`	100.0	100.0 / 63.158	Review
`TkA06G157600`	`LXL04_024268`	`JCVI_TKOH_00273`	100.0	86.364 / 60.127	Complex
`TkA06G157670`	`LXL04_024266`	`JCVI_TKOH_00273`	93.0	99.76 / 70.57	Probable
`TkA06G157770`	`LXL04_024265`	`JCVI_TKOH_00273`	98.7	100.0 / 81.026	Strict
`TkA06G158180`	`LXL04_024261`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G158250`	`LXL04_024260`	`JCVI_TKOH_00273`	98.7	100.0 / 100.0	Strict
`TkA06G158430`	`LXL04_024259`	`JCVI_TKOH_00273`	99.2	100.0 / 70.833	Complex
`TkA06G159590`	`LXL04_024256`	`JCVI_TKOH_00273`	99.2	100.0 / 100.0	Strict
`TkA06G159790`	`LXL04_024252`	`JCVI_TKOH_00273`	90.4	100.0 / 100.0	Probable
`TkA06G159860`	`LXL04_024249`	`JCVI_TKOH_00273`	94.2	87.05 / 100.0	Probable
`TkA06G159870`	`LXL04_024248`	`JCVI_TKOH_00273`	55.8	100.0 / 38.992	Complex
`TkA06G160250`	`LXL04_024242`	`JCVI_TKOH_00273`	99.5	100.0 / 100.0	Complex
`TkA06G160640`	`LXL04_024238`	`JCVI_TKOH_00273`	96.0	100.0 / 57.566	Review
`TkA06G160840`	`LXL04_024237`	`JCVI_TKOH_00273`	98.6	100.0 / 100.0	Complex
`TkA06G160980`	`LXL04_024235`	`JCVI_TKOH_00273`	98.8	83.729 / 57.176	Complex
`TkA06G161180`	`LXL04_024234`	`JCVI_TKOH_00273`	98.5	100.0 / 55.765	Review
`TkA06G162190`	`LXL04_024232`	`JCVI_TKOH_00273`	99.1	100.0 / 100.0	Strict
`TkA06G162390`	`LXL04_024231`	`JCVI_TKOH_00273`	82.8	56.311 / 82.734	Review
`TkA06G162510`	`LXL04_024229`	`JCVI_TKOH_00273`	97.4	100.0 / 100.0	Strict
`TkA06G162610`	`LXL04_024227`	`JCVI_TKOH_00273`	99.2	99.721 / 100.0	Strict
`TkA06G163020`	`LXL04_024224`	`JCVI_TKOH_00273`	97.2	75.0 / 27.786	Complex
`TkA06G164190`	`LXL04_024219`	`JCVI_TKOH_00273`	95.3	100.0 / 100.0	Strict
`TkA06G164260`	`LXL04_024218`	`JCVI_TKOH_00273`	92.6	100.0 / 93.085	Complex
`TkA06G164320`	`LXL04_024217`	`JCVI_TKOH_00273`	99.3	96.083 / 98.588	Strict
`TkA06G164380`	`LXL04_024215`	`JCVI_TKOH_00273`	89.2	100.0 / 100.0	Review
`TkA06G164390`	`LXL04_024214`	`JCVI_TKOH_00273`	98.3	97.294 / 84.192	Complex
`TkA06G164430`	`LXL04_024213`	`JCVI_TKOH_00273`	98.7	76.744 / 61.6	Review
`TkA06G164520`	`LXL04_024210`	`JCVI_TKOH_00273`	99.5	100.0 / 100.0	Strict
`TkA06G164680`	`LXL04_024206`	`JCVI_TKOH_00273`	99.8	100.0 / 100.0	Complex
`TkA06G164760`	`LXL04_024204`	`JCVI_TKOH_00273`	87.3	100.0 / 79.577	Review
`TkA06G164940`	`LXL04_024202`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G165010`	`LXL04_024201`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G165020`	`LXL04_024200`	`JCVI_TKOH_00273`	99.8	93.769 / 72.079	Probable
`TkA06G165160`	`LXL04_024199`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Complex
`TkA06G165250`	`LXL04_024198`	`JCVI_TKOH_00273`	100.0	100.0 / 64.356	Complex
`TkA06G165450`	`LXL04_024197`	`JCVI_TKOH_00273`	99.8	100.0 / 94.421	Strict
`TkA06G168190`	`LXL04_024185`	`JCVI_TKOH_00273`	98.3	99.512 / 91.892	Complex
`TkA06G168400`	`LXL04_024184`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Complex
`TkA06G168550`	`LXL04_024183`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G168560`	`LXL04_024182`	`JCVI_TKOH_00273`	93.9	100.0 / 100.0	Complex
`TkA06G168690`	`LXL04_024180`	`JCVI_TKOH_00273`	94.8	97.436 / 58.41	Review
`TkA06G169210`	`LXL04_024178`	`JCVI_TKOH_00273`	94.1	100.0 / 100.0	Probable
`TkA06G169790`	`LXL04_024177`	`JCVI_TKOH_00273`	100.0	98.984 / 92.235	Strict
`TkA06G170620`	`LXL04_024170`	`JCVI_TKOH_00273`	100.0	100.0 / 100.0	Strict
`TkA06G170640`	`LXL04_024169`	`JCVI_TKOH_00273`	95.8	100.0 / 78.485	Probable
`TkA06G170650`	`LXL04_024169`	`JCVI_TKOH_00273`	99.0	93.204 / 14.545	Review
`TkA06G170660`	`LXL04_024168`	`JCVI_TKOH_00273`	79.7	82.192 / 50.685	Complex
`TkA06G170850`	`LXL04_024165`	`JCVI_TKOH_00273`	96.4	100.0 / 93.836	Complex
`TkA06G170990`	`LXL04_024166`	`JCVI_TKOH_00273`	90.4	99.455 / 66.85	Complex
`TkA06G171040`	`LXL04_024160`	`JCVI_TKOH_00273`	97.6	94.781 / 98.696	Strict
`TkA06G171300`	`LXL04_024157`	`JCVI_TKOH_00273`	99.4	100.0 / 100.0	Strict
`TkA06G171430`	`LXL04_024154`	`JCVI_TKOH_00273`	98.9	100.0 / 100.0	Review
`TkA06G171880`	`LXL04_024152`	`JCVI_TKOH_00273`	99.3	100.0 / 89.32	Review
`TkA06G172170`	`LXL04_024151`	`JCVI_TKOH_00273`	90.6	56.667 / 52.564	Review
`TkA06G172590`	`LXL04_024148`	`JCVI_TKOH_00273`	98.9	100.0 / 100.0	Strict
`TkA06G172610`	`LXL04_024146`	`JCVI_TKOH_00273`	96.6	67.939 / 50.568	Review
`TkA06G172830`	`LXL04_024144`	`JCVI_TKOH_00273`	98.8	99.789 / 99.579	Strict
`TkA06G172880`	`LXL04_024142`	`JCVI_TKOH_00273`	96.2	100.0 / 100.0	Strict
`TkA06G173210`	`LXL04_024138`	`JCVI_TKOH_00273`	87.7	100.0 / 100.0	Complex
`TkA06G173270`	`LXL04_024138`	`JCVI_TKOH_00273`	69.6	99.054 / 77.941	Complex
`TkA06G173280`	`LXL04_024138`	`JCVI_TKOH_00273`	59.5	95.627 / 81.373	Complex
`TkA06G173400`	`LXL04_024137`	`JCVI_TKOH_00273`	88.4	93.665 / 69.97	Review