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Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00232
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 77
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00232

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00232 Chr05 25100757-29903972 Chr04 41172744-46686225 mixed High 77 anchors
Chr05 25100757-29903972 Chr04 41172744-46686225 JCVI_TKOH_00232 · 77 gene pairs TkA05G093030 | LXL04_019856 | 92.1% | multi_source_to_OH1004 | Complex TkA05G093080 | LXL04_019850 | 99.6% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G093770 | LXL04_019846 | 99.0% | RBH_high_identity_coverage_synteny | Strict TkA05G093900 | LXL04_019844 | 98.6% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G094100 | LXL04_019842 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G094110 | LXL04_019840 | 97.7% | multi_source_to_OH1004 | Complex TkA05G094510 | LXL04_019836 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA05G094930 | LXL04_019831 | 98.3% | non_reciprocal_best_hit | Complex TkA05G095010 | LXL04_019829 | 90.7% | non_reciprocal_best_hit | Complex TkA05G095190 | LXL04_019827 | 98.7% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G095200 | LXL04_019828 | 98.5% | multi_candidate_from_TK1151 | Complex TkA05G095540 | LXL04_019856 | 98.7% | sequence_supported_annotation_or_model_conflict | Review
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00232 Chr05:25100757-29903972 Chr04:41172744-46686225 mixed 77 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 77 · Showing 1–77 · Page 1/1

Download All Anchors TSV
TkA05G093030 → LXL04_019856
92.1%
TkA05G093080 → LXL04_019850
99.6%
TkA05G093770 → LXL04_019846
99.0%
TkA05G093900 → LXL04_019844
98.6%
TkA05G094100 → LXL04_019842
100.0%
TkA05G094110 → LXL04_019840
97.7%
TkA05G094510 → LXL04_019836
99.1%
TkA05G094930 → LXL04_019831
98.3%
TkA05G095010 → LXL04_019829
90.7%
TkA05G095190 → LXL04_019827
98.7%
TkA05G095200 → LXL04_019828
98.5%
TkA05G095540 → LXL04_019856
98.7%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA05G093030LXL04_019856JCVI_TKOH_0023292.1100.0 / 61.419Complex
TkA05G093080LXL04_019850JCVI_TKOH_0023299.6100.0 / 100.0Review
TkA05G093770LXL04_019846JCVI_TKOH_0023299.0100.0 / 100.0Strict
TkA05G093900LXL04_019844JCVI_TKOH_0023298.645.395 / 46.0Review
TkA05G094100LXL04_019842JCVI_TKOH_00232100.096.97 / 61.244Review
TkA05G094110LXL04_019840JCVI_TKOH_0023297.797.539 / 100.0Complex
TkA05G094510LXL04_019836JCVI_TKOH_0023299.1100.0 / 95.652Strict
TkA05G094930LXL04_019831JCVI_TKOH_0023298.398.377 / 70.465Complex
TkA05G095010LXL04_019829JCVI_TKOH_0023290.737.017 / 11.442Complex
TkA05G095190LXL04_019827JCVI_TKOH_0023298.788.399 / 98.446Review
TkA05G095200LXL04_019828JCVI_TKOH_0023298.560.748 / 98.485Complex
TkA05G095540LXL04_019856JCVI_TKOH_0023298.788.889 / 33.703Review
TkA05G095620LXL04_019857JCVI_TKOH_0023292.9100.0 / 100.0Probable
TkA05G095810LXL04_019859JCVI_TKOH_0023297.598.636 / 82.56Complex
TkA05G096030LXL04_019861JCVI_TKOH_00232100.0100.0 / 43.922Review
TkA05G096810LXL04_019864JCVI_TKOH_0023280.797.761 / 51.935Review
TkA05G096820LXL04_019865JCVI_TKOH_0023289.588.412 / 83.212Complex
TkA05G097040LXL04_019866JCVI_TKOH_00232100.0100.0 / 100.0Strict
TkA05G098070LXL04_019874JCVI_TKOH_0023299.396.364 / 95.067Complex
TkA05G098080LXL04_019875JCVI_TKOH_00232100.0100.0 / 100.0Complex
TkA05G098130LXL04_019876JCVI_TKOH_0023299.0100.0 / 100.0Complex
TkA05G098900LXL04_019872JCVI_TKOH_0023294.489.091 / 96.465Complex
TkA05G098910LXL04_019873JCVI_TKOH_0023298.991.611 / 57.717Review
TkA05G098940LXL04_019874JCVI_TKOH_0023299.896.364 / 95.067Complex
TkA05G098950LXL04_019875JCVI_TKOH_00232100.0100.0 / 100.0Complex
TkA05G099000LXL04_019876JCVI_TKOH_0023299.0100.0 / 100.0Complex
TkA05G099610LXL04_019877JCVI_TKOH_0023298.0100.0 / 100.0Strict
TkA05G100410LXL04_019880JCVI_TKOH_0023297.594.258 / 53.388Review
TkA05G100450LXL04_019881JCVI_TKOH_0023299.792.628 / 86.527Strict
TkA05G100580LXL04_019883JCVI_TKOH_0023283.286.066 / 24.131Complex
TkA05G100590LXL04_019883JCVI_TKOH_0023298.2100.0 / 21.525Review
TkA05G100670LXL04_019885JCVI_TKOH_0023299.299.794 / 88.991Strict
TkA05G101320LXL04_019889JCVI_TKOH_0023299.5100.0 / 100.0Strict
TkA05G101650LXL04_019893JCVI_TKOH_0023241.097.818 / 38.94Complex
TkA05G101950LXL04_019893JCVI_TKOH_0023294.884.672 / 7.069Complex
TkA05G101960LXL04_019893JCVI_TKOH_0023263.991.864 / 28.032Complex
TkA05G102270LXL04_019895JCVI_TKOH_0023299.6100.0 / 100.0Strict
TkA05G102530LXL04_019896JCVI_TKOH_0023296.3100.0 / 100.0Complex
TkA05G102580LXL04_019897JCVI_TKOH_0023298.7100.0 / 100.0Strict
TkA05G103120LXL04_019898JCVI_TKOH_0023297.868.462 / 37.238Complex
TkA05G103430LXL04_019900JCVI_TKOH_0023298.693.562 / 80.443Complex
TkA05G103900LXL04_019904JCVI_TKOH_0023297.296.52 / 89.313Strict
TkA05G104390LXL04_019905JCVI_TKOH_0023298.380.405 / 41.264Complex
TkA05G104400LXL04_019905JCVI_TKOH_0023298.797.068 / 19.213Review
TkA05G104680LXL04_019908JCVI_TKOH_0023298.691.414 / 37.281Review
TkA05G104820LXL04_019909JCVI_TKOH_0023297.0100.0 / 100.0Strict
TkA05G105070LXL04_019913JCVI_TKOH_0023296.0100.0 / 100.0Strict
TkA05G105090LXL04_019914JCVI_TKOH_0023299.1100.0 / 100.0Strict
TkA05G105100LXL04_019915JCVI_TKOH_0023298.9100.0 / 100.0Strict
TkA05G105620LXL04_019918JCVI_TKOH_0023297.1100.0 / 100.0Strict
TkA05G105700LXL04_019919JCVI_TKOH_0023291.879.032 / 96.528Complex
TkA05G105800LXL04_019921JCVI_TKOH_0023298.142.188 / 90.0Review
TkA05G105930LXL04_019922JCVI_TKOH_0023299.697.689 / 98.101Complex
TkA05G106280LXL04_019927JCVI_TKOH_0023298.3100.0 / 100.0Strict
TkA05G107150LXL04_019934JCVI_TKOH_0023293.287.978 / 81.0Complex
TkA05G107280LXL04_019936JCVI_TKOH_0023295.493.732 / 95.041Strict
TkA05G107380LXL04_019937JCVI_TKOH_0023290.3100.0 / 92.891Probable
TkA05G107430LXL04_019938JCVI_TKOH_0023299.5100.0 / 100.0Complex
TkA05G108010LXL04_019953JCVI_TKOH_0023296.1100.0 / 100.0Strict
TkA05G108140LXL04_019952JCVI_TKOH_0023292.989.72 / 100.0Probable
TkA05G108250LXL04_019951JCVI_TKOH_0023299.5100.0 / 100.0Strict
TkA05G108310LXL04_019950JCVI_TKOH_0023292.8100.0 / 100.0Complex
TkA05G108330LXL04_019938JCVI_TKOH_0023276.799.747 / 93.16Complex
TkA05G108740LXL04_019949JCVI_TKOH_0023299.093.204 / 31.27Review
TkA05G109070LXL04_019968JCVI_TKOH_00232100.0100.0 / 79.348Complex
TkA05G109190LXL04_019971JCVI_TKOH_0023297.6100.0 / 92.697Strict
TkA05G109260LXL04_019972JCVI_TKOH_0023295.0100.0 / 100.0Review
TkA05G109470LXL04_019975JCVI_TKOH_0023296.391.827 / 67.025Review
TkA05G109610LXL04_019976JCVI_TKOH_00232100.0100.0 / 98.625Review
TkA05G110050LXL04_019980JCVI_TKOH_0023280.4100.0 / 100.0Review
TkA05G110260LXL04_019984JCVI_TKOH_00232100.0100.0 / 100.0Complex
TkA05G110530LXL04_019987JCVI_TKOH_0023297.263.922 / 97.898Review
TkA05G110610LXL04_019988JCVI_TKOH_0023297.688.553 / 100.0Strict
TkA05G110620LXL04_019989JCVI_TKOH_0023292.9100.0 / 90.47Probable
TkA05G110700LXL04_019992JCVI_TKOH_0023298.298.58 / 92.047Strict
TkA05G110710LXL04_019993JCVI_TKOH_0023297.6100.0 / 90.781Strict
TkA05G111110LXL04_019996JCVI_TKOH_0023293.544.583 / 4.419Complex