LXL04_019846 | RubberDandelionOmics

Gene overview

LXL04_019846

Reference: OH-1004 Chr: Chr04 Coordinates: 41646188-41648614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2427 bp · LXL04_019846|LXL04_019846|OH1004|cDNA

ATGTCATTTACAAACAGTTCGTTGTTGATGGGGTTTCTGCTCTTACTCTCTTTGGCTCTCATCATTTCTCTGTCATCTGCAACCGACACCATCACTGCGAACCAATCAATTTCCGGCGATCAAACAATCAGCTCGAAAGATGAAAATTTTGAACTGGGGTTCTTCAAAGCAGGTAATTCTTCAAACTATTACATAGGTATGTGGTACAAAAAAGTTTCCACAGACCCTCCAACCATCGCTTGGGTAGCAAACAGAGAAAC...

CDS

Download CDS FASTA

2427 bp · LXL04_019846|LXL04_019846|OH1004|CDS

ATGTCATTTACAAACAGTTCGTTGTTGATGGGGTTTCTGCTCTTACTCTCTTTGGCTCTCATCATTTCTCTGTCATCTGCAACCGACACCATCACTGCGAACCAATCAATTTCCGGCGATCAAACAATCAGCTCGAAAGATGAAAATTTTGAACTGGGGTTCTTCAAAGCAGGTAATTCTTCAAACTATTACATAGGTATGTGGTACAAAAAAGTTTCCACAGACCCTCCAACCATCGCTTGGGTAGCAAACAGAGAAAC...

Protein

Download Protein FASTA

808 aa · LXL04_019846|LXL04_019846|OH1004|PROTEIN

MSFTNSSLLMGFLLLLSLALIISLSSATDTITANQSISGDQTISSKDENFELGFFKAGNSSNYYIGMWYKKVSTDPPTIAWVANRETPVSDRFKSELKIIDGNLVLLNESKSPIWSTGINSSNSNSVIAVLLDDGNLVLRNGSNSIDPIWQSFDFPAHTWLPGAKIAYNNITGRKQLLTSWKSIEDPAEGLFTLELDPIEKQYIIKWNRTTQYWTSGPWNGQIFSQVPEMRLNYIYNFSYVSNVNESYFTYSLYNPSIIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019846`
TK1151 ID	TkA05G093770
OH-1004 ID	LXL04_019846
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019846

Location Chr04:41646188-41648614 (+)

Description Similar to At2g19130: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19130`	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130.	No verified direct reference in this release
`At4g00340`	Serine/threonine-protein kinase.	No verified direct reference in this release
`At4g11900`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At4g27290`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019846 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0045087 innate immune response Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G19130

ath:AT4G00340

ath:AT4G11900

ath:AT4G21380

ath:AT4G27290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.858

Rank 1 · LXL04_019846 · OH-1004

Endoplasmic reticulum0.080

Rank 2 · LXL04_019846 · OH-1004

Cytoplasm0.066

Rank 3 · LXL04_019846 · OH-1004

Nucleus0.033

Rank 4 · LXL04_019846 · OH-1004

Lysosome / Vacuole0.030

Rank 5 · LXL04_019846 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin78-182 aa

PF00954.26S_locus_glycop214-322 aa

PF08276.18PAN_2348-408 aa

PF07714.24PK_Tyr_Ser-Thr491-756 aa

PF00069.32Pkinase492-754 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019846	`PF01453.31`	B_lectin	78	182	6.8e-33	114.0
LXL04_019846	`PF00954.26`	S_locus_glycop	214	322	4.5e-34	118.0
LXL04_019846	`PF08276.18`	PAN_2	348	408	3.3e-11	43.8
LXL04_019846	`PF07714.24`	PK_Tyr_Ser-Thr	491	756	1.2e-43	150.0
LXL04_019846	`PF00069.32`	Pkinase	492	754	2.7e-48	165.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64477`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	59.527%	Swiss-Prot	strong database homology
`Q39203`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	44.059%	Swiss-Prot	moderate database homology
`Q9T058`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900	38.389%	Swiss-Prot	moderate database homology
`O81905`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-8	36.548%	Swiss-Prot	moderate database homology
`O81832`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	36.745%	Swiss-Prot	moderate database homology

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