LXL04_019873 | RubberDandelionOmics

Gene overview

LXL04_019873

Reference: OH-1004 Chr: Chr04 Coordinates: 42744436-42748091 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1422 bp · LXL04_019873|LXL04_019873|OH1004|cDNA

ATGCTTCCATTGTTCAGGTATCGATTAGATTCAACACTTCGGTTCTTCTTCACTCATACTCGGATCTGTTTTCACGACCAGAAAATGCTCAAATCGACGTTTTCCTGCTGTAAAGTCTACATATCCGAGACACGAAACAAATCCGCTCTTAATTCAATCGAACAAGCTGCAAAGTTATTCCCAGAGGCGGCCATTGTCAACAAATTTCAGGACGAGACTTACAACAGAGTAGGATACACGCTTGTCTCAAAATCCTCCCC...

CDS

Download CDS FASTA

1422 bp · LXL04_019873|LXL04_019873|OH1004|CDS

ATGCTTCCATTGTTCAGGTATCGATTAGATTCAACACTTCGGTTCTTCTTCACTCATACTCGGATCTGTTTTCACGACCAGAAAATGCTCAAATCGACGTTTTCCTGCTGTAAAGTCTACATATCCGAGACACGAAACAAATCCGCTCTTAATTCAATCGAACAAGCTGCAAAGTTATTCCCAGAGGCGGCCATTGTCAACAAATTTCAGGACGAGACTTACAACAGAGTAGGATACACGCTTGTCTCAAAATCCTCCCC...

Protein

Download Protein FASTA

473 aa · LXL04_019873|LXL04_019873|OH1004|PROTEIN

MLPLFRYRLDSTLRFFFTHTRICFHDQKMLKSTFSCCKVYISETRNKSALNSIEQAAKLFPEAAIVNKFQDETYNRVGYTLVSKSSPNSSPDSPPLKHAVFSMVKAAFEAIDFGLHSGTHPRLGVVDHICFHPLASSSLEDLAGTAKSLASDIGSILKVPTYTYGAAHNTQRSLDSIRRALGYFNPTTTTHHWSGAPQSTTLALEPDHGPAQVVQSKGVVTIGATKWVDNYNVPVFSDNMAKVRRIAKRVSGRGGGLAGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019873`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019873

Location Chr04:42744436-42748091 (+)

Description Similar to M5005_Spy1772: Glutamate formimidoyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20830`	Involved in the regulation of root growth.	AtFTCD-L, a trans-Golgi network localized protein, modulates root growth of Arabidopsis in high-concentration agar culture medium.2022 · DOI: 10.1007/s00425-022-03911-5

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019873 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006548 L-histidine catabolic process Biological Process

GO:0007010 cytoskeleton organization Biological Process

GO:0019556 L-histidine catabolic process to glutamate and formamide Biological Process

GO:0019557 L-histidine catabolic process to glutamate and formate Biological Process

GO:0035999 tetrahydrofolate interconversion Biological Process

GO:0046903 secretion Biological Process

GO:0048364 root development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT2G20830

rno:89833

spy:SPy_2083

spz:M5005_Spy1772

ssc:397517

tac:Ta1476

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.386

Rank 1 · LXL04_019873 · OH-1004

Nucleus0.272

Rank 2 · LXL04_019873 · OH-1004

Mitochondrion0.237

Rank 3 · LXL04_019873 · OH-1004

Plastid0.129

Rank 4 · LXL04_019873 · OH-1004

Peroxisome0.082

Rank 5 · LXL04_019873 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07837.18FTCD_N36-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019873	`PF07837.18`	FTCD_N	36	225	5.7e-51	173.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKT4`	Arabidopsis thaliana	Formiminotransferase cyclodeaminase-like protein	59.091%	Swiss-Prot	moderate database homology

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