Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00189

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 665

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00189

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00189 Chr04 34940-17190201 Chr08 37803145-54014168 mixed High 65 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00189`	Chr04:34940-17190201	Chr08:37803145-54014168	mixed	665	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 665 · Showing 601–665 · Page 4/4

Previous Download All Anchors TSV

TkA04G058460 → LXL04_036281

84.4%

TkA04G058490 → LXL04_036279

96.2%

TkA04G058500 → LXL04_036278

81.5%

TkA04G058510 → LXL04_036278

100.0%

TkA04G058580 → LXL04_036275

100.0%

TkA04G058600 → LXL04_036273

97.2%

TkA04G058750 → LXL04_036272

100.0%

TkA04G058810 → LXL04_036271

100.0%

TkA04G058910 → LXL04_036270

100.0%

TkA04G058920 → LXL04_036269

100.0%

TkA04G058970 → LXL04_036268

100.0%

TkA04G058990 → LXL04_036267

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G058460`	`LXL04_036281`	`JCVI_TKOH_00189`	84.4	100.0 / 100.0	Review
`TkA04G058490`	`LXL04_036279`	`JCVI_TKOH_00189`	96.2	96.324 / 37.861	Review
`TkA04G058500`	`LXL04_036278`	`JCVI_TKOH_00189`	81.5	90.476 / 43.869	Review
`TkA04G058510`	`LXL04_036278`	`JCVI_TKOH_00189`	100.0	97.283 / 24.387	Review
`TkA04G058580`	`LXL04_036275`	`JCVI_TKOH_00189`	100.0	93.249 / 60.218	Complex
`TkA04G058600`	`LXL04_036273`	`JCVI_TKOH_00189`	97.2	98.722 / 99.528	Strict
`TkA04G058750`	`LXL04_036272`	`JCVI_TKOH_00189`	100.0	100.0 / 53.363	Review
`TkA04G058810`	`LXL04_036271`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Strict
`TkA04G058910`	`LXL04_036270`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Complex
`TkA04G058920`	`LXL04_036269`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Review
`TkA04G058970`	`LXL04_036268`	`JCVI_TKOH_00189`	100.0	100.0 / 95.376	Complex
`TkA04G058990`	`LXL04_036267`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Complex
`TkA04G059060`	`LXL04_036266`	`JCVI_TKOH_00189`	99.5	100.0 / 100.0	Strict
`TkA04G059090`	`LXL04_036265`	`JCVI_TKOH_00189`	99.2	100.0 / 100.0	Strict
`TkA04G059230`	`LXL04_036264`	`JCVI_TKOH_00189`	99.3	99.218 / 85.385	Complex
`TkA04G059290`	`LXL04_036263`	`JCVI_TKOH_00189`	98.1	100.0 / 99.301	Review
`TkA04G059440`	`LXL04_036264`	`JCVI_TKOH_00189`	91.4	100.0 / 92.981	Complex
`TkA04G059870`	`LXL04_036261`	`JCVI_TKOH_00189`	82.7	49.324 / 47.468	Review
`TkA04G059910`	`LXL04_036259`	`JCVI_TKOH_00189`	72.2	25.786 / 3.173	Complex
`TkA04G059930`	`LXL04_036255`	`JCVI_TKOH_00189`	95.9	100.0 / 17.656	Review
`TkA04G060020`	`LXL04_036255`	`JCVI_TKOH_00189`	93.6	90.38 / 25.832	Complex
`TkA04G060030`	`LXL04_036255`	`JCVI_TKOH_00189`	95.2	84.146 / 14.978	Complex
`TkA04G060040`	`LXL04_036255`	`JCVI_TKOH_00189`	88.6	46.528 / 5.065	Complex
`TkA04G060060`	`LXL04_036255`	`JCVI_TKOH_00189`	54.5	100.0 / 28.148	Complex
`TkA04G060070`	`LXL04_036258`	`JCVI_TKOH_00189`	98.8	100.0 / 84.488	Strict
`TkA04G060100`	`LXL04_036257`	`JCVI_TKOH_00189`	99.0	100.0 / 100.0	Strict
`TkA04G060140`	`LXL04_036256`	`JCVI_TKOH_00189`	99.9	100.0 / 100.0	Strict
`TkA04G060150`	`LXL04_036255`	`JCVI_TKOH_00189`	99.9	100.0 / 100.0	Strict
`TkA04G060350`	`LXL04_036254`	`JCVI_TKOH_00189`	98.5	49.635 / 13.793	Complex
`TkA04G060590`	`LXL04_036251`	`JCVI_TKOH_00189`	98.6	100.0 / 100.0	Strict
`TkA04G060630`	`LXL04_036249`	`JCVI_TKOH_00189`	88.7	96.341 / 21.92	Complex
`TkA04G060700`	`LXL04_036248`	`JCVI_TKOH_00189`	99.5	100.0 / 95.025	Strict
`TkA04G060720`	`LXL04_036247`	`JCVI_TKOH_00189`	95.5	100.0 / 100.0	Strict
`TkA04G060760`	`LXL04_036246`	`JCVI_TKOH_00189`	97.4	100.0 / 85.459	Strict
`TkA04G060810`	`LXL04_036245`	`JCVI_TKOH_00189`	94.3	100.0 / 55.336	Review
`TkA04G060900`	`LXL04_036245`	`JCVI_TKOH_00189`	94.2	86.559 / 33.794	Complex
`TkA04G061060`	`LXL04_036244`	`JCVI_TKOH_00189`	95.8	100.0 / 100.0	Strict
`TkA04G061390`	`LXL04_036243`	`JCVI_TKOH_00189`	96.1	100.0 / 100.0	Complex
`TkA04G061440`	`LXL04_036241`	`JCVI_TKOH_00189`	99.4	92.139 / 100.0	Complex
`TkA04G061700`	`LXL04_036239`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Review
`TkA04G061720`	`LXL04_036238`	`JCVI_TKOH_00189`	97.6	100.0 / 95.807	Strict
`TkA04G062140`	`LXL04_036235`	`JCVI_TKOH_00189`	99.8	93.663 / 100.0	Strict
`TkA04G062300`	`LXL04_036233`	`JCVI_TKOH_00189`	99.8	100.0 / 98.469	Strict
`TkA04G062310`	`LXL04_036232`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Complex
`TkA04G062330`	`LXL04_036230`	`JCVI_TKOH_00189`	99.8	100.0 / 100.0	Strict
`TkA04G062410`	`LXL04_036227`	`JCVI_TKOH_00189`	98.6	100.0 / 100.0	Strict
`TkA04G062430`	`LXL04_036226`	`JCVI_TKOH_00189`	99.2	100.0 / 100.0	Strict
`TkA04G062450`	`LXL04_036224`	`JCVI_TKOH_00189`	99.5	100.0 / 100.0	Strict
`TkA04G062460`	`LXL04_036223`	`JCVI_TKOH_00189`	99.6	100.0 / 100.0	Strict
`TkA04G062520`	`LXL04_036222`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Review
`TkA04G062590`	`LXL04_036221`	`JCVI_TKOH_00189`	95.9	94.6 / 90.603	Strict
`TkA04G062610`	`LXL04_036220`	`JCVI_TKOH_00189`	99.7	100.0 / 100.0	Complex
`TkA04G062820`	`LXL04_036219`	`JCVI_TKOH_00189`	99.8	100.0 / 100.0	Complex
`TkA04G062850`	`LXL04_036218`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Complex
`TkA04G063150`	`LXL04_036214`	`JCVI_TKOH_00189`	98.4	100.0 / 100.0	Strict
`TkA04G063180`	`LXL04_036213`	`JCVI_TKOH_00189`	95.0	77.966 / 88.219	Probable
`TkA04G063190`	`LXL04_036211`	`JCVI_TKOH_00189`	100.0	76.073 / 100.0	Probable
`TkA04G063200`	`LXL04_036210`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Strict
`TkA04G063210`	`LXL04_036208`	`JCVI_TKOH_00189`	100.0	100.0 / 100.0	Review
`TkA04G063670`	`LXL04_036206`	`JCVI_TKOH_00189`	95.4	100.0 / 83.582	Strict
`TkA04G064350`	`LXL04_036202`	`JCVI_TKOH_00189`	95.6	100.0 / 100.0	Strict
`TkA04G064370`	`LXL04_036200`	`JCVI_TKOH_00189`	99.3	100.0 / 98.482	Strict
`TkA04G064380`	`LXL04_036199`	`JCVI_TKOH_00189`	99.6	100.0 / 100.0	Strict
`TkA04G064390`	`LXL04_036198`	`JCVI_TKOH_00189`	98.3	100.0 / 100.0	Strict
`TkA04G064520`	`LXL04_036197`	`JCVI_TKOH_00189`	99.6	100.0 / 100.0	Complex