同源/共线性证据

跨参考基因组查看同源关系与共线性区块证据。

证据边界:TK1151 和 OH-1004 是同一物种的不同材料,本页展示两个参考基因组之间的同源与共线性 ID 对照,不是同一品种/同一基因组版本升级。区块来自 DIAMOND RBH 与坐标顺序锚点,后续仍可用 MCScanX/JCVI 继续复核。也支持直接输入 JCVI_TKOH_ 开头的区块 ID。

全局区块概览

共线性区块
427
ID 对照记录
84884
高置信区块
302
中置信区块
125
参考材料组装基因数gap 数端粒扫描
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

查询解析

输入 ID
JCVI_TKOH_00126
解析类型
区块 ID
ID 对照 + 共线性联合证据
解析到的基因
无
未能直接匹配到橡胶草基因目录
关联结果
0 / 1 / 51
对照 / 区块 / 锚点
最佳区块: JCVI_TKOH_00126

当前输入已解析为共线性区块 ID,下面优先展示区块范围和锚点基因。

线性共线性图

当前查询的最佳共线性区块以线性 ribbon 形式展示。

JCVI_TKOH_00126 Chr03 17389308-20200820 Chr02 24697424-26918569 mixed High 51 anchors
Chr03 17389308-20200820 Chr02 24697424-26918569 JCVI_TKOH_00126 · 51 gene pairs TkA03G067430 | LXL04_006764 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA03G067460 | LXL04_006765 | 99.9% | RBH_high_identity_coverage_synteny | Strict TkA03G067930 | LXL04_006767 | 99.2% | RBH_high_identity_coverage_synteny | Strict TkA03G067950 | LXL04_006772 | 93.1% | multi_source_to_OH1004 | Complex TkA03G068690 | LXL04_006794 | 99.4% | sequence_supported_annotation_or_model_conflict | Review TkA03G068720 | LXL04_006793 | 99.2% | non_reciprocal_best_hit | Complex TkA03G068750 | LXL04_006791 | 99.8% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA03G069040 | LXL04_006789 | 98.9% | multi_source_to_OH1004 | Complex TkA03G069050 | LXL04_006788 | 97.7% | multi_source_to_OH1004 | Complex TkA03G069110 | LXL04_006785 | 99.2% | multi_source_to_OH1004 | Complex TkA03G069150 | LXL04_006784 | 100.0% | multi_source_to_OH1004 | Complex TkA03G069240 | LXL04_006782 | 98.7% | multi_source_to_OH1004 | Complex
High Medium Other 仅绘制前 12 条锚点
锚点表按页展示,TSV 下载包含当前查询的全部锚点;上方 ribbon 仅展示当前区块的部分线性共线性骨架。

当前查询证据

当前查询没有可展示的 ID 对照记录。

共线性证据

区块查询位置目标位置方向当前映射锚点数置信等级备注
JCVI_TKOH_00126 Chr03:17389308-20200820 Chr02:24697424-26918569 mixed 51 高置信 Formal JCVI synteny block from rebuilt ID map pipeline.

区块锚点基因

锚点总数: 51 · 当前范围 1–51 · 页码 1/1

TkA03G067430 → LXL04_006764
99.5%
TkA03G067460 → LXL04_006765
99.9%
TkA03G067930 → LXL04_006767
99.2%
TkA03G067950 → LXL04_006772
93.1%
TkA03G068690 → LXL04_006794
99.4%
TkA03G068720 → LXL04_006793
99.2%
TkA03G068750 → LXL04_006791
99.8%
TkA03G069040 → LXL04_006789
98.9%
TkA03G069050 → LXL04_006788
97.7%
TkA03G069110 → LXL04_006785
99.2%
TkA03G069150 → LXL04_006784
100.0%
TkA03G069240 → LXL04_006782
98.7%
TK1151 基因OH-1004 基因区块一致性覆盖度置信等级
TkA03G067430LXL04_006764JCVI_TKOH_0012699.5100.0 / 100.0Strict
TkA03G067460LXL04_006765JCVI_TKOH_0012699.999.617 / 86.394Strict
TkA03G067930LXL04_006767JCVI_TKOH_0012699.2100.0 / 100.0Strict
TkA03G067950LXL04_006772JCVI_TKOH_0012693.198.168 / 98.355Complex
TkA03G068690LXL04_006794JCVI_TKOH_0012699.497.576 / 57.295待复核
TkA03G068720LXL04_006793JCVI_TKOH_0012699.277.019 / 29.454Complex
TkA03G068750LXL04_006791JCVI_TKOH_0012699.8100.0 / 100.0待复核
TkA03G069040LXL04_006789JCVI_TKOH_0012698.9100.0 / 100.0Complex
TkA03G069050LXL04_006788JCVI_TKOH_0012697.7100.0 / 100.0Complex
TkA03G069110LXL04_006785JCVI_TKOH_0012699.2100.0 / 100.0Complex
TkA03G069150LXL04_006784JCVI_TKOH_00126100.0100.0 / 100.0Complex
TkA03G069240LXL04_006782JCVI_TKOH_0012698.7100.0 / 100.0Complex
TkA03G069250LXL04_006780JCVI_TKOH_0012699.8100.0 / 100.0Complex
TkA03G069460LXL04_006770JCVI_TKOH_0012695.5100.0 / 95.405Complex
TkA03G069770LXL04_006774JCVI_TKOH_0012688.6100.0 / 100.0待复核
TkA03G069950LXL04_006772JCVI_TKOH_0012697.8100.0 / 100.0Complex
TkA03G070010LXL04_006770JCVI_TKOH_0012695.4100.0 / 100.0Complex
TkA03G070620LXL04_006777JCVI_TKOH_0012693.689.615 / 76.375Complex
TkA03G070740LXL04_006780JCVI_TKOH_0012699.6100.0 / 100.0Complex
TkA03G070910LXL04_006782JCVI_TKOH_0012698.7100.0 / 100.0Complex
TkA03G071150LXL04_006784JCVI_TKOH_00126100.0100.0 / 100.0Complex
TkA03G071210LXL04_006785JCVI_TKOH_0012699.2100.0 / 100.0Complex
TkA03G071330LXL04_006788JCVI_TKOH_0012697.7100.0 / 100.0Complex
TkA03G071350LXL04_006789JCVI_TKOH_0012699.2100.0 / 100.0Complex
TkA03G071550LXL04_006791JCVI_TKOH_0012699.8100.0 / 100.0Complex
TkA03G071560LXL04_006793JCVI_TKOH_0012699.893.968 / 96.2Strict
TkA03G071600LXL04_006794JCVI_TKOH_00126100.0100.0 / 100.0Complex
TkA03G072260LXL04_006797JCVI_TKOH_00126100.0100.0 / 100.0Complex
TkA03G073330LXL04_006800JCVI_TKOH_00126100.0100.0 / 100.0Strict
TkA03G073650LXL04_006801JCVI_TKOH_0012695.6100.0 / 100.0Strict
TkA03G074250LXL04_006804JCVI_TKOH_00126100.0100.0 / 100.0Complex
TkA03G074280LXL04_006805JCVI_TKOH_0012697.097.442 / 95.218Complex
TkA03G074370LXL04_006806JCVI_TKOH_00126100.038.835 / 7.59Complex
TkA03G074380LXL04_006806JCVI_TKOH_0012699.898.118 / 79.127Complex
TkA03G074390LXL04_006807JCVI_TKOH_0012699.8100.0 / 100.0待复核
TkA03G074440LXL04_006791JCVI_TKOH_0012695.8100.0 / 100.0Complex
TkA03G074570LXL04_006809JCVI_TKOH_0012689.8100.0 / 100.0Complex
TkA03G075010LXL04_006811JCVI_TKOH_0012699.0100.0 / 100.0Complex
TkA03G075060LXL04_006813JCVI_TKOH_00126100.0100.0 / 100.0待复核
TkA03G075850LXL04_006821JCVI_TKOH_0012698.796.398 / 72.222Probable
TkA03G076600LXL04_006820JCVI_TKOH_0012695.2100.0 / 100.0Strict
TkA03G076640LXL04_006819JCVI_TKOH_0012698.984.466 / 63.504待复核
TkA03G078530LXL04_006813JCVI_TKOH_00126100.0100.0 / 100.0待复核
TkA03G078540LXL04_006812JCVI_TKOH_00126100.055.634 / 58.519Complex
TkA03G078560LXL04_006811JCVI_TKOH_0012699.0100.0 / 100.0Complex
TkA03G078930LXL04_006809JCVI_TKOH_0012689.8100.0 / 100.0Complex
TkA03G079010LXL04_006791JCVI_TKOH_0012694.394.925 / 55.986Complex
TkA03G079040LXL04_006807JCVI_TKOH_0012699.6100.0 / 100.0Complex
TkA03G079050LXL04_006806JCVI_TKOH_0012686.294.444 / 60.342Complex
TkA03G079170LXL04_006805JCVI_TKOH_0012697.197.442 / 95.218Complex
TkA03G079280LXL04_006804JCVI_TKOH_0012697.4100.0 / 100.0Complex