Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00351

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 58

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00351

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00351 Chr08 67097514-69421145 Chr07 43163881-44811762 mixed High 58 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00351`	Chr08:67097514-69421145	Chr07:43163881-44811762	mixed	58	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 58 · Showing 1–58 · Page 1/1

Download All Anchors TSV

TkA08G257330 → LXL04_033447

99.5%

TkA08G257340 → LXL04_033448

98.7%

TkA08G257350 → LXL04_033449

99.2%

TkA08G257540 → LXL04_033451

100.0%

TkA08G257550 → LXL04_033452

91.2%

TkA08G257630 → LXL04_033453

96.9%

TkA08G257850 → LXL04_033455

99.3%

TkA08G257990 → LXL04_033456

100.0%

TkA08G258000 → LXL04_033457

96.5%

TkA08G258010 → LXL04_033458

99.3%

TkA08G258250 → LXL04_033459

99.6%

TkA08G258290 → LXL04_033459

99.6%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA08G257330`	`LXL04_033447`	`JCVI_TKOH_00351`	99.5	100.0 / 55.856	Review
`TkA08G257340`	`LXL04_033448`	`JCVI_TKOH_00351`	98.7	98.881 / 92.133	Strict
`TkA08G257350`	`LXL04_033449`	`JCVI_TKOH_00351`	99.2	98.686 / 99.835	Strict
`TkA08G257540`	`LXL04_033451`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Strict
`TkA08G257550`	`LXL04_033452`	`JCVI_TKOH_00351`	91.2	100.0 / 100.0	Probable
`TkA08G257630`	`LXL04_033453`	`JCVI_TKOH_00351`	96.9	100.0 / 85.516	Strict
`TkA08G257850`	`LXL04_033455`	`JCVI_TKOH_00351`	99.3	93.933 / 100.0	Strict
`TkA08G257990`	`LXL04_033456`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Strict
`TkA08G258000`	`LXL04_033457`	`JCVI_TKOH_00351`	96.5	100.0 / 100.0	Strict
`TkA08G258010`	`LXL04_033458`	`JCVI_TKOH_00351`	99.3	96.429 / 67.164	Review
`TkA08G258250`	`LXL04_033459`	`JCVI_TKOH_00351`	99.6	97.629 / 63.713	Review
`TkA08G258290`	`LXL04_033459`	`JCVI_TKOH_00351`	99.6	90.438 / 31.927	Review
`TkA08G258300`	`LXL04_033460`	`JCVI_TKOH_00351`	98.4	83.729 / 100.0	Complex
`TkA08G258630`	`LXL04_033462`	`JCVI_TKOH_00351`	99.0	100.0 / 100.0	Strict
`TkA08G258770`	`LXL04_033463`	`JCVI_TKOH_00351`	97.6	100.0 / 100.0	Strict
`TkA08G259650`	`LXL04_033442`	`JCVI_TKOH_00351`	97.9	100.0 / 100.0	Complex
`TkA08G259660`	`LXL04_033442`	`JCVI_TKOH_00351`	37.9	67.433 / 71.915	Complex
`TkA08G259760`	`LXL04_033441`	`JCVI_TKOH_00351`	89.5	100.0 / 100.0	Complex
`TkA08G260240`	`LXL04_033436`	`JCVI_TKOH_00351`	96.4	100.0 / 100.0	Complex
`TkA08G260280`	`LXL04_033433`	`JCVI_TKOH_00351`	100.0	100.0 / 44.963	Review
`TkA08G260680`	`LXL04_033432`	`JCVI_TKOH_00351`	94.6	100.0 / 100.0	Complex
`TkA08G260690`	`LXL04_033431`	`JCVI_TKOH_00351`	94.9	100.0 / 100.0	Complex
`TkA08G260720`	`LXL04_033429`	`JCVI_TKOH_00351`	96.4	100.0 / 100.0	Review
`TkA08G260760`	`LXL04_033425`	`JCVI_TKOH_00351`	95.5	100.0 / 84.821	Complex
`TkA08G261500`	`LXL04_033423`	`JCVI_TKOH_00351`	97.8	99.449 / 75.208	Complex
`TkA08G261640`	`LXL04_033422`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G261670`	`LXL04_033421`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G261840`	`LXL04_033419`	`JCVI_TKOH_00351`	99.0	99.659 / 31.432	Review
`TkA08G261850`	`LXL04_033419`	`JCVI_TKOH_00351`	97.7	78.182 / 9.257	Complex
`TkA08G261860`	`LXL04_033419`	`JCVI_TKOH_00351`	96.6	94.194 / 15.716	Review
`TkA08G261910`	`LXL04_033419`	`JCVI_TKOH_00351`	74.4	92.857 / 22.605	Complex
`TkA08G261980`	`LXL04_033416`	`JCVI_TKOH_00351`	84.3	100.0 / 100.0	Complex
`TkA08G262280`	`LXL04_033415`	`JCVI_TKOH_00351`	92.0	100.0 / 73.988	Complex
`TkA08G262300`	`LXL04_033414`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G262510`	`LXL04_033412`	`JCVI_TKOH_00351`	100.0	83.264 / 69.097	Complex
`TkA08G262540`	`LXL04_033408`	`JCVI_TKOH_00351`	50.4	95.887 / 76.639	Complex
`TkA08G262860`	`LXL04_033408`	`JCVI_TKOH_00351`	99.6	100.0 / 53.689	Review
`TkA08G263050`	`LXL04_033414`	`JCVI_TKOH_00351`	99.8	100.0 / 100.0	Complex
`TkA08G263080`	`LXL04_033415`	`JCVI_TKOH_00351`	94.5	100.0 / 100.0	Complex
`TkA08G263210`	`LXL04_033416`	`JCVI_TKOH_00351`	87.9	100.0 / 100.0	Complex
`TkA08G263240`	`LXL04_033419`	`JCVI_TKOH_00351`	79.1	84.466 / 19.053	Complex
`TkA08G263300`	`LXL04_033419`	`JCVI_TKOH_00351`	100.0	94.194 / 15.716	Review
`TkA08G263310`	`LXL04_033419`	`JCVI_TKOH_00351`	97.7	78.182 / 9.257	Complex
`TkA08G263320`	`LXL04_033419`	`JCVI_TKOH_00351`	97.9	99.107 / 35.845	Review
`TkA08G263830`	`LXL04_033421`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G263840`	`LXL04_033422`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G263870`	`LXL04_033423`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Complex
`TkA08G264600`	`LXL04_033424`	`JCVI_TKOH_00351`	85.3	100.0 / 100.0	Review
`TkA08G264630`	`LXL04_033425`	`JCVI_TKOH_00351`	100.0	100.0 / 99.702	Complex
`TkA08G265250`	`LXL04_033429`	`JCVI_TKOH_00351`	68.3	100.0 / 100.0	Complex
`TkA08G265420`	`LXL04_033427`	`JCVI_TKOH_00351`	99.6	96.54 / 51.955	Review
`TkA08G265460`	`LXL04_033429`	`JCVI_TKOH_00351`	100.0	100.0 / 100.0	Review
`TkA08G265470`	`LXL04_033431`	`JCVI_TKOH_00351`	99.7	100.0 / 100.0	Complex
`TkA08G265480`	`LXL04_033432`	`JCVI_TKOH_00351`	99.4	98.742 / 89.714	Complex
`TkA08G265640`	`LXL04_033433`	`JCVI_TKOH_00351`	99.1	99.714 / 85.749	Strict
`TkA08G266080`	`LXL04_033436`	`JCVI_TKOH_00351`	97.2	100.0 / 100.0	Complex
`TkA08G266090`	`LXL04_033437`	`JCVI_TKOH_00351`	95.2	100.0 / 100.0	Strict
`TkA08G266390`	`LXL04_033441`	`JCVI_TKOH_00351`	99.2	100.0 / 100.0	Complex