Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00087

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 295

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00087

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00087 Chr02 72840797-91671752 Chr03 64866140-84532342 mixed High 95 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00087`	Chr02:72840797-91671752	Chr03:64866140-84532342	mixed	295	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 295 · Showing 201–295 · Page 2/2

Previous Download All Anchors TSV

TkA02G347220 → LXL04_015315

100.0%

TkA02G347240 → LXL04_015314

97.3%

TkA02G347320 → LXL04_015313

99.1%

TkA02G347350 → LXL04_015312

100.0%

TkA02G347360 → LXL04_015311

97.2%

TkA02G347440 → LXL04_015310

98.7%

TkA02G347450 → LXL04_015309

98.6%

TkA02G347710 → LXL04_015303

89.2%

TkA02G348010 → LXL04_015302

97.8%

TkA02G348220 → LXL04_015300

82.7%

TkA02G348290 → LXL04_015297

98.2%

TkA02G348300 → LXL04_015295

82.1%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G347220`	`LXL04_015315`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Complex
`TkA02G347240`	`LXL04_015314`	`JCVI_TKOH_00087`	97.3	100.0 / 100.0	Strict
`TkA02G347320`	`LXL04_015313`	`JCVI_TKOH_00087`	99.1	100.0 / 100.0	Complex
`TkA02G347350`	`LXL04_015312`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Strict
`TkA02G347360`	`LXL04_015311`	`JCVI_TKOH_00087`	97.2	100.0 / 91.742	Strict
`TkA02G347440`	`LXL04_015310`	`JCVI_TKOH_00087`	98.7	100.0 / 67.634	Review
`TkA02G347450`	`LXL04_015309`	`JCVI_TKOH_00087`	98.6	100.0 / 100.0	Strict
`TkA02G347710`	`LXL04_015303`	`JCVI_TKOH_00087`	89.2	100.0 / 98.23	Review
`TkA02G348010`	`LXL04_015302`	`JCVI_TKOH_00087`	97.8	100.0 / 100.0	Review
`TkA02G348220`	`LXL04_015300`	`JCVI_TKOH_00087`	82.7	100.0 / 100.0	Complex
`TkA02G348290`	`LXL04_015297`	`JCVI_TKOH_00087`	98.2	100.0 / 100.0	Strict
`TkA02G348300`	`LXL04_015295`	`JCVI_TKOH_00087`	82.1	14.0 / 6.983	Complex
`TkA02G348310`	`LXL04_015296`	`JCVI_TKOH_00087`	96.4	100.0 / 19.448	Review
`TkA02G348320`	`LXL04_015293`	`JCVI_TKOH_00087`	97.4	100.0 / 100.0	Strict
`TkA02G348360`	`LXL04_015292`	`JCVI_TKOH_00087`	87.4	94.425 / 100.0	Review
`TkA02G348370`	`LXL04_015291`	`JCVI_TKOH_00087`	99.0	100.0 / 100.0	Complex
`TkA02G348470`	`LXL04_015291`	`JCVI_TKOH_00087`	97.9	97.436 / 86.364	Complex
`TkA02G348490`	`LXL04_015288`	`JCVI_TKOH_00087`	97.7	100.0 / 100.0	Strict
`TkA02G348660`	`LXL04_015285`	`JCVI_TKOH_00087`	98.7	48.528 / 100.0	Review
`TkA02G348840`	`LXL04_015282`	`JCVI_TKOH_00087`	81.0	99.592 / 99.6	Review
`TkA02G348900`	`LXL04_015281`	`JCVI_TKOH_00087`	93.5	100.0 / 55.491	Review
`TkA02G349380`	`LXL04_015270`	`JCVI_TKOH_00087`	95.9	100.0 / 100.0	Strict
`TkA02G349440`	`LXL04_015267`	`JCVI_TKOH_00087`	99.1	100.0 / 100.0	Strict
`TkA02G349450`	`LXL04_015266`	`JCVI_TKOH_00087`	92.8	100.0 / 100.0	Probable
`TkA02G349460`	`LXL04_015265`	`JCVI_TKOH_00087`	99.8	100.0 / 77.95	Complex
`TkA02G349790`	`LXL04_015264`	`JCVI_TKOH_00087`	99.3	57.358 / 15.094	Complex
`TkA02G349980`	`LXL04_015261`	`JCVI_TKOH_00087`	97.8	99.559 / 26.526	Review
`TkA02G350050`	`LXL04_015260`	`JCVI_TKOH_00087`	78.4	95.033 / 77.688	Complex
`TkA02G350500`	`LXL04_015265`	`JCVI_TKOH_00087`	100.0	94.636 / 76.708	Complex
`TkA02G350810`	`LXL04_015264`	`JCVI_TKOH_00087`	81.3	96.022 / 46.673	Review
`TkA02G350960`	`LXL04_015263`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Review
`TkA02G350990`	`LXL04_015261`	`JCVI_TKOH_00087`	99.3	100.0 / 96.479	Strict
`TkA02G351080`	`LXL04_015260`	`JCVI_TKOH_00087`	100.0	100.0 / 63.172	Complex
`TkA02G351220`	`LXL04_015256`	`JCVI_TKOH_00087`	89.8	99.661 / 49.0	Complex
`TkA02G351280`	`LXL04_015256`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Strict
`TkA02G351720`	`LXL04_015253`	`JCVI_TKOH_00087`	97.5	100.0 / 100.0	Strict
`TkA02G351760`	`LXL04_015247`	`JCVI_TKOH_00087`	94.6	100.0 / 100.0	Complex
`TkA02G352760`	`LXL04_015246`	`JCVI_TKOH_00087`	86.1	100.0 / 100.0	Review
`TkA02G352900`	`LXL04_015244`	`JCVI_TKOH_00087`	94.5	100.0 / 100.0	Probable
`TkA02G353120`	`LXL04_015241`	`JCVI_TKOH_00087`	88.3	95.918 / 30.104	Review
`TkA02G353200`	`LXL04_015236`	`JCVI_TKOH_00087`	97.5	99.339 / 64.141	Review
`TkA02G353750`	`LXL04_015233`	`JCVI_TKOH_00087`	89.2	100.0 / 100.0	Complex
`TkA02G353860`	`LXL04_015232`	`JCVI_TKOH_00087`	95.1	83.108 / 77.116	Complex
`TkA02G353920`	`LXL04_015233`	`JCVI_TKOH_00087`	84.6	100.0 / 100.0	Complex
`TkA02G354330`	`LXL04_015233`	`JCVI_TKOH_00087`	90.6	100.0 / 100.0	Complex
`TkA02G354350`	`LXL04_015232`	`JCVI_TKOH_00087`	97.0	78.182 / 94.357	Complex
`TkA02G354490`	`LXL04_015229`	`JCVI_TKOH_00087`	97.9	100.0 / 100.0	Strict
`TkA02G354500`	`LXL04_015228`	`JCVI_TKOH_00087`	99.1	100.0 / 100.0	Strict
`TkA02G354510`	`LXL04_015227`	`JCVI_TKOH_00087`	97.3	100.0 / 100.0	Complex
`TkA02G354570`	`LXL04_015225`	`JCVI_TKOH_00087`	99.3	100.0 / 100.0	Complex
`TkA02G354600`	`LXL04_015223`	`JCVI_TKOH_00087`	99.4	100.0 / 100.0	Strict
`TkA02G355120`	`LXL04_015218`	`JCVI_TKOH_00087`	98.0	99.273 / 52.995	Review
`TkA02G355340`	`LXL04_015217`	`JCVI_TKOH_00087`	97.4	100.0 / 100.0	Complex
`TkA02G355650`	`LXL04_015214`	`JCVI_TKOH_00087`	99.7	92.442 / 100.0	Strict
`TkA02G355660`	`LXL04_015213`	`JCVI_TKOH_00087`	99.5	100.0 / 100.0	Strict
`TkA02G355880`	`LXL04_015212`	`JCVI_TKOH_00087`	99.8	100.0 / 100.0	Strict
`TkA02G356040`	`LXL04_015210`	`JCVI_TKOH_00087`	80.7	90.71 / 100.0	Review
`TkA02G356270`	`LXL04_015206`	`JCVI_TKOH_00087`	99.5	100.0 / 100.0	Complex
`TkA02G356460`	`LXL04_015205`	`JCVI_TKOH_00087`	100.0	90.618 / 38.224	Review
`TkA02G356550`	`LXL04_015203`	`JCVI_TKOH_00087`	99.5	98.02 / 72.527	Probable
`TkA02G356820`	`LXL04_015200`	`JCVI_TKOH_00087`	95.2	100.0 / 99.717	Probable
`TkA02G356850`	`LXL04_015199`	`JCVI_TKOH_00087`	100.0	78.906 / 78.906	Review
`TkA02G356920`	`LXL04_015198`	`JCVI_TKOH_00087`	96.4	100.0 / 100.0	Strict
`TkA02G357100`	`LXL04_015196`	`JCVI_TKOH_00087`	99.7	99.746 / 100.0	Strict
`TkA02G357550`	`LXL04_015193`	`JCVI_TKOH_00087`	83.3	100.0 / 54.176	Complex
`TkA02G357840`	`LXL04_015191`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Strict
`TkA02G357850`	`LXL04_015190`	`JCVI_TKOH_00087`	99.1	100.0 / 100.0	Strict
`TkA02G357880`	`LXL04_015189`	`JCVI_TKOH_00087`	98.4	100.0 / 100.0	Strict
`TkA02G357890`	`LXL04_015188`	`JCVI_TKOH_00087`	98.0	100.0 / 100.0	Strict
`TkA02G357980`	`LXL04_015186`	`JCVI_TKOH_00087`	98.5	100.0 / 100.0	Strict
`TkA02G358210`	`LXL04_015185`	`JCVI_TKOH_00087`	97.4	100.0 / 100.0	Strict
`TkA02G358220`	`LXL04_015184`	`JCVI_TKOH_00087`	99.4	100.0 / 100.0	Complex
`TkA02G358350`	`LXL04_015183`	`JCVI_TKOH_00087`	81.6	100.0 / 100.0	Review
`TkA02G358360`	`LXL04_015182`	`JCVI_TKOH_00087`	98.7	100.0 / 100.0	Strict
`TkA02G358370`	`LXL04_015181`	`JCVI_TKOH_00087`	99.8	100.0 / 100.0	Strict
`TkA02G358380`	`LXL04_015179`	`JCVI_TKOH_00087`	99.1	50.0 / 89.062	Review
`TkA02G358400`	`LXL04_015178`	`JCVI_TKOH_00087`	97.9	100.0 / 100.0	Strict
`TkA02G358820`	`LXL04_015176`	`JCVI_TKOH_00087`	100.0	100.0 / 100.0	Complex
`TkA02G358830`	`LXL04_015177`	`JCVI_TKOH_00087`	99.4	100.0 / 77.885	Probable
`TkA02G358900`	`LXL04_015175`	`JCVI_TKOH_00087`	96.4	94.068 / 72.078	Complex
`TkA02G358910`	`LXL04_015174`	`JCVI_TKOH_00087`	98.5	100.0 / 49.627	Review
`TkA02G359010`	`LXL04_015169`	`JCVI_TKOH_00087`	99.8	100.0 / 100.0	Complex
`TkA02G359310`	`LXL04_015163`	`JCVI_TKOH_00087`	79.0	100.0 / 94.845	Complex
`TkA02G359340`	`LXL04_015166`	`JCVI_TKOH_00087`	98.7	100.0 / 100.0	Complex
`TkA02G359450`	`LXL04_015163`	`JCVI_TKOH_00087`	99.0	100.0 / 100.0	Complex
`TkA02G359510`	`LXL04_015160`	`JCVI_TKOH_00087`	99.1	100.0 / 100.0	Strict
`TkA02G359530`	`LXL04_015159`	`JCVI_TKOH_00087`	99.8	98.131 / 69.421	Review
`TkA02G359700`	`LXL04_015156`	`JCVI_TKOH_00087`	95.2	81.395 / 68.627	Review
`TkA02G359780`	`LXL04_015155`	`JCVI_TKOH_00087`	95.3	100.0 / 51.205	Review
`TkA02G360020`	`LXL04_015154`	`JCVI_TKOH_00087`	99.5	100.0 / 100.0	Strict
`TkA02G360050`	`LXL04_015150`	`JCVI_TKOH_00087`	98.7	100.0 / 100.0	Strict
`TkA02G360060`	`LXL04_015149`	`JCVI_TKOH_00087`	97.0	100.0 / 100.0	Strict
`TkA02G360120`	`LXL04_015148`	`JCVI_TKOH_00087`	92.4	100.0 / 99.936	Review
`TkA02G360510`	`LXL04_015146`	`JCVI_TKOH_00087`	100.0	68.675 / 100.0	Review
`TkA02G360630`	`LXL04_015144`	`JCVI_TKOH_00087`	96.3	74.319 / 65.292	Complex