LXL04_015315 | RubberDandelionOmics

Gene overview

LXL04_015315

Reference: OH-1004 Chr: Chr03 Coordinates: 68438052-68438472 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

357 bp · LXL04_015315|LXL04_015315|OH1004|cDNA

ATGAACAATGCTCGTGGTCAAGATCAAGAAACACCAGTGGTGGCGGGTTTTGAAGTCCCGAGATCACCGGATGCAAGTTACAACAACATTTACACAGCAAGCGAAGATGATGGGCGGGACCCACCGATAGTACCTCAACACCTACAACACACAGTGTTAAGCTACCCGACCAGTGGTGGCCCGGCTGCCCAGCTGCCCGAACCGCAACATGTGGTGTTGAATCATCTGTACATCGAGAACAGAGAGGCACCGCGGTCAGT...

CDS

Download CDS FASTA

357 bp · LXL04_015315|LXL04_015315|OH1004|CDS

ATGAACAATGCTCGTGGTCAAGATCAAGAAACACCAGTGGTGGCGGGTTTTGAAGTCCCGAGATCACCGGATGCAAGTTACAACAACATTTACACAGCAAGCGAAGATGATGGGCGGGACCCACCGATAGTACCTCAACACCTACAACACACAGTGTTAAGCTACCCGACCAGTGGTGGCCCGGCTGCCCAGCTGCCCGAACCGCAACATGTGGTGTTGAATCATCTGTACATCGAGAACAGAGAGGCACCGCGGTCAGT...

Protein

Download Protein FASTA

118 aa · LXL04_015315|LXL04_015315|OH1004|PROTEIN

MNNARGQDQETPVVAGFEVPRSPDASYNNIYTASEDDGRDPPIVPQHLQHTVLSYPTSGGPAAQLPEPQHVVLNHLYIENREAPRSVVALGFSHRFRAKYVNVVLYKPVQRRGSSSNG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015315`
TK1151 ID	TkA02G347220
OH-1004 ID	LXL04_015315
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015315

Location Chr03:68438052-68438472 (+)

Description Similar to KINB3: SNF1-related protein kinase regulatory subunit beta-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28060`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release
`At4g16360`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release
`At5g21170`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015315 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0031669 cellular response to nutrient levels Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0043562 cellular response to nitrogen levels Biological Process

GO:0045859 regulation of protein kinase activity Biological Process

GO:0120162 positive regulation of cold-induced thermogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G28060

ath:AT4G16360

ath:AT5G21170

hsa:5565

rno:64562

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.541

Rank 1 · LXL04_015315 · OH-1004

Cytoplasm0.426

Rank 2 · LXL04_015315 · OH-1004

Mitochondrion0.087

Rank 3 · LXL04_015315 · OH-1004

Cell membrane0.071

Rank 4 · LXL04_015315 · OH-1004

Endoplasmic reticulum0.049

Rank 5 · LXL04_015315 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04739.21AMPKBI39-108 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015315	`PF04739.21`	AMPKBI	39	108	5e-23	81.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUU8`	Arabidopsis thaliana	SNF1-related protein kinase regulatory subunit beta-3	62.069%	Swiss-Prot	strong database homology
`Q9SCY5`	Arabidopsis thaliana	SNF1-related protein kinase regulatory subunit beta-2	52.525%	Swiss-Prot	strong database homology
`Q84VQ1`	Arabidopsis thaliana	SNF1-related protein kinase regulatory subunit beta-1	46.939%	Swiss-Prot	moderate database homology

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