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Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00080
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 83
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00080

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00080 Chr02 31667877-37636247 Chr03 122502124-127364088 mixed High 83 anchors
Chr02 31667877-37636247 Chr03 122502124-127364088 JCVI_TKOH_00080 · 83 gene pairs TkA02G121900 | LXL04_016581 | 99.7% | RBH_high_identity_coverage_synteny | Strict TkA02G122100 | LXL04_016579 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA02G122480 | LXL04_016575 | 84.4% | non_reciprocal_best_hit | Complex TkA02G122490 | LXL04_016578 | 90.1% | RBH_sequence_supported | Probable TkA02G122550 | LXL04_016573 | 96.5% | sequence_supported_annotation_or_model_conflict | Review TkA02G122770 | LXL04_016571 | 71.8% | non_reciprocal_best_hit | Complex TkA02G122980 | LXL04_016570 | 85.5% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA02G123330 | LXL04_016567 | 98.8% | sequence_supported_annotation_or_model_conflict | Review TkA02G123420 | LXL04_016566 | 100.0% | multi_candidate_from_TK1151 | Complex TkA02G123440 | LXL04_016567 | 72.4% | multi_source_to_OH1004 | Complex TkA02G123600 | LXL04_016563 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA02G123770 | LXL04_016561 | 97.7% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00080 Chr02:31667877-37636247 Chr03:122502124-127364088 mixed 83 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 83 · Showing 1–83 · Page 1/1

Download All Anchors TSV
TkA02G121900 → LXL04_016581
99.7%
TkA02G122100 → LXL04_016579
100.0%
TkA02G122480 → LXL04_016575
84.4%
TkA02G122490 → LXL04_016578
90.1%
TkA02G122550 → LXL04_016573
96.5%
TkA02G122770 → LXL04_016571
71.8%
TkA02G122980 → LXL04_016570
85.5%
TkA02G123330 → LXL04_016567
98.8%
TkA02G123420 → LXL04_016566
100.0%
TkA02G123440 → LXL04_016567
72.4%
TkA02G123600 → LXL04_016563
99.5%
TkA02G123770 → LXL04_016561
97.7%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA02G121900LXL04_016581JCVI_TKOH_0008099.799.346 / 95.597Strict
TkA02G122100LXL04_016579JCVI_TKOH_00080100.0100.0 / 100.0Strict
TkA02G122480LXL04_016575JCVI_TKOH_0008084.425.0 / 14.953Complex
TkA02G122490LXL04_016578JCVI_TKOH_0008090.1100.0 / 100.0Probable
TkA02G122550LXL04_016573JCVI_TKOH_0008096.549.425 / 92.473Review
TkA02G122770LXL04_016571JCVI_TKOH_0008071.857.547 / 30.909Complex
TkA02G122980LXL04_016570JCVI_TKOH_0008085.596.026 / 94.521Review
TkA02G123330LXL04_016567JCVI_TKOH_0008098.8100.0 / 100.0Review
TkA02G123420LXL04_016566JCVI_TKOH_00080100.071.681 / 94.186Complex
TkA02G123440LXL04_016567JCVI_TKOH_0008072.483.389 / 100.0Complex
TkA02G123600LXL04_016563JCVI_TKOH_0008099.5100.0 / 100.0Strict
TkA02G123770LXL04_016561JCVI_TKOH_0008097.798.904 / 92.84Strict
TkA02G123900LXL04_016558JCVI_TKOH_0008089.7100.0 / 91.176Complex
TkA02G123920LXL04_016557JCVI_TKOH_0008096.1100.0 / 100.0Strict
TkA02G123940LXL04_016554JCVI_TKOH_0008099.3100.0 / 100.0Complex
TkA02G124290LXL04_016552JCVI_TKOH_0008099.7100.0 / 100.0Strict
TkA02G124440LXL04_016551JCVI_TKOH_0008094.3100.0 / 100.0Probable
TkA02G125170LXL04_016549JCVI_TKOH_0008076.1100.0 / 100.0Review
TkA02G125320LXL04_016547JCVI_TKOH_0008099.2100.0 / 100.0Strict
TkA02G126240LXL04_016546JCVI_TKOH_00080100.0100.0 / 100.0Strict
TkA02G126860LXL04_016540JCVI_TKOH_0008098.3100.0 / 49.187Review
TkA02G126910LXL04_016540JCVI_TKOH_0008097.5100.0 / 49.187Review
TkA02G126920LXL04_016538JCVI_TKOH_00080100.0100.0 / 100.0Review
TkA02G127040LXL04_016537JCVI_TKOH_0008099.7100.0 / 100.0Strict
TkA02G127200LXL04_016533JCVI_TKOH_0008098.4100.0 / 100.0Review
TkA02G127520LXL04_016531JCVI_TKOH_0008088.9100.0 / 100.0Complex
TkA02G128780LXL04_016525JCVI_TKOH_00080100.097.51 / 73.899Probable
TkA02G128840LXL04_016524JCVI_TKOH_0008097.1100.0 / 100.0Strict
TkA02G130740LXL04_016520JCVI_TKOH_00080100.0100.0 / 100.0Strict
TkA02G130820LXL04_016519JCVI_TKOH_0008098.799.252 / 49.937Review
TkA02G130850LXL04_016515JCVI_TKOH_0008099.7100.0 / 100.0Complex
TkA02G131070LXL04_016514JCVI_TKOH_0008091.4100.0 / 74.146Complex
TkA02G131280LXL04_016512JCVI_TKOH_00080100.081.818 / 59.639Complex
TkA02G131550LXL04_016509JCVI_TKOH_00080100.0100.0 / 100.0Strict
TkA02G131760LXL04_016506JCVI_TKOH_0008062.5100.0 / 100.0Review
TkA02G131930LXL04_016503JCVI_TKOH_0008062.6100.0 / 84.804Complex
TkA02G131940LXL04_016502JCVI_TKOH_0008099.079.839 / 79.839Review
TkA02G132050LXL04_016503JCVI_TKOH_0008077.6100.0 / 50.838Complex
TkA02G133770LXL04_016495JCVI_TKOH_00080100.091.905 / 18.381Review
TkA02G133820LXL04_016495JCVI_TKOH_0008097.699.398 / 15.714Review
TkA02G133900LXL04_016499JCVI_TKOH_0008081.670.732 / 52.727Complex
TkA02G134240LXL04_016494JCVI_TKOH_0008099.5100.0 / 100.0Strict
TkA02G134620LXL04_016491JCVI_TKOH_00080100.09.254 / 3.854Complex
TkA02G134630LXL04_016491JCVI_TKOH_0008091.597.297 / 49.893Review
TkA02G134640LXL04_016490JCVI_TKOH_0008099.8100.0 / 100.0Strict
TkA02G134750LXL04_016488JCVI_TKOH_0008091.6100.0 / 100.0Probable
TkA02G134770LXL04_016487JCVI_TKOH_0008075.6100.0 / 100.0Review
TkA02G135330LXL04_016485JCVI_TKOH_0008098.695.833 / 100.0Strict
TkA02G135340LXL04_016475JCVI_TKOH_0008079.297.361 / 62.667Complex
TkA02G135350LXL04_016484JCVI_TKOH_0008099.2100.0 / 100.0Strict
TkA02G135360LXL04_016483JCVI_TKOH_0008096.5100.0 / 100.0Strict
TkA02G135400LXL04_016475JCVI_TKOH_0008070.176.471 / 22.286Complex
TkA02G135740LXL04_016475JCVI_TKOH_0008076.368.611 / 74.857Complex
TkA02G135880LXL04_016480JCVI_TKOH_0008099.593.095 / 44.015Review
TkA02G135900LXL04_016479JCVI_TKOH_00080100.0100.0 / 100.0Complex
TkA02G136030LXL04_016476JCVI_TKOH_0008096.2100.0 / 84.477Complex
TkA02G136110LXL04_016475JCVI_TKOH_0008099.6100.0 / 100.0Complex
TkA02G137190LXL04_016470JCVI_TKOH_0008099.3100.0 / 29.15Review
TkA02G137200LXL04_016470JCVI_TKOH_0008087.999.167 / 43.725Complex
TkA02G137420LXL04_016469JCVI_TKOH_0008099.4100.0 / 100.0Strict
TkA02G137630LXL04_016466JCVI_TKOH_0008098.392.063 / 69.88Review
TkA02G137730LXL04_016463JCVI_TKOH_0008099.1100.0 / 100.0Strict
TkA02G139070LXL04_016458JCVI_TKOH_0008096.898.328 / 80.734Strict
TkA02G139390LXL04_016454JCVI_TKOH_00080100.0100.0 / 66.234Complex
TkA02G139430LXL04_016454JCVI_TKOH_00080100.0100.0 / 66.234Complex
TkA02G139440LXL04_016453JCVI_TKOH_0008098.3100.0 / 100.0Complex
TkA02G139490LXL04_016451JCVI_TKOH_0008096.9100.0 / 100.0Review
TkA02G139670LXL04_016451JCVI_TKOH_0008064.686.55 / 99.371Complex
TkA02G140530LXL04_016443JCVI_TKOH_0008097.7100.0 / 100.0Strict
TkA02G140780LXL04_016442JCVI_TKOH_0008098.4100.0 / 67.294Review
TkA02G140820LXL04_016441JCVI_TKOH_0008084.4100.0 / 83.077Review
TkA02G140830LXL04_016440JCVI_TKOH_0008094.6100.0 / 100.0Probable
TkA02G142290LXL04_016436JCVI_TKOH_0008082.8100.0 / 100.0Review
TkA02G142310LXL04_016434JCVI_TKOH_0008098.290.895 / 100.0Strict
TkA02G142400LXL04_016433JCVI_TKOH_0008092.197.357 / 97.154Complex
TkA02G142810LXL04_016432JCVI_TKOH_0008098.595.694 / 84.388Review
TkA02G142880LXL04_016429JCVI_TKOH_0008083.699.304 / 51.135Complex
TkA02G143810LXL04_016429JCVI_TKOH_0008079.497.363 / 62.007Complex
TkA02G143920LXL04_016429JCVI_TKOH_0008087.0100.0 / 35.962Complex
TkA02G144010LXL04_016429JCVI_TKOH_00080100.0100.0 / 100.0Complex
TkA02G144030LXL04_016428JCVI_TKOH_00080100.0100.0 / 100.0Review
TkA02G145860LXL04_016421JCVI_TKOH_0008097.2100.0 / 100.0Strict
TkA02G146070LXL04_016420JCVI_TKOH_0008098.087.719 / 66.964Complex