Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00160
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 19
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00160The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00160 |
Chr03:1299491-1581588 | Chr06:119233762-119506884 | mixed | 19 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 19 · Showing 1–19 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA03G005460 | LXL04_030586 | JCVI_TKOH_00160 | 98.7 | 54.225 / 41.398 | Complex |
TkA03G005640 | LXL04_030588 | JCVI_TKOH_00160 | 99.6 | 100.0 / 100.0 | Complex |
TkA03G005650 | LXL04_030589 | JCVI_TKOH_00160 | 98.4 | 100.0 / 100.0 | Complex |
TkA03G005670 | LXL04_030590 | JCVI_TKOH_00160 | 100.0 | 99.259 / 52.344 | Review |
TkA03G005690 | LXL04_030591 | JCVI_TKOH_00160 | 100.0 | 100.0 / 100.0 | Complex |
TkA03G006010 | LXL04_030592 | JCVI_TKOH_00160 | 97.7 | 98.526 / 58.558 | Review |
TkA03G006020 | LXL04_030593 | JCVI_TKOH_00160 | 98.6 | 100.0 / 100.0 | Review |
TkA03G006030 | LXL04_030594 | JCVI_TKOH_00160 | 99.6 | 100.0 / 100.0 | Complex |
TkA03G006040 | LXL04_030595 | JCVI_TKOH_00160 | 99.4 | 91.713 / 100.0 | Complex |
TkA03G006050 | LXL04_030596 | JCVI_TKOH_00160 | 100.0 | 63.253 / 14.463 | Complex |
TkA03G006060 | LXL04_030596 | JCVI_TKOH_00160 | 94.1 | 100.0 / 68.044 | Complex |
TkA03G006120 | LXL04_030597 | JCVI_TKOH_00160 | 64.2 | 84.876 / 82.08 | Complex |
TkA03G006140 | LXL04_030598 | JCVI_TKOH_00160 | 87.5 | 90.998 / 76.879 | Complex |
TkA03G006200 | LXL04_030601 | JCVI_TKOH_00160 | 99.7 | 100.0 / 100.0 | Complex |
TkA03G006220 | LXL04_030602 | JCVI_TKOH_00160 | 100.0 | 100.0 / 100.0 | Complex |
TkA03G006450 | LXL04_030605 | JCVI_TKOH_00160 | 100.0 | 100.0 / 100.0 | Review |
TkA03G006460 | LXL04_030606 | JCVI_TKOH_00160 | 92.4 | 100.0 / 97.797 | Complex |
TkA03G006480 | LXL04_030607 | JCVI_TKOH_00160 | 96.6 | 100.0 / 100.0 | Review |
TkA03G006490 | LXL04_030608 | JCVI_TKOH_00160 | 88.3 | 64.646 / 73.563 | Complex |